Wall clock time and date at job start Mon Mar 30 2020 06:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46952 * 2 1 4 4 N 1.46890 * 109.47062 * 240.00033 * 2 1 3 5 5 C 1.46900 * 111.00355 * 274.99995 * 4 2 1 6 6 C 1.52994 * 109.47859 * 176.58821 * 5 4 2 7 7 H 1.08997 * 109.46565 * 173.05413 * 6 5 4 8 8 C 1.53040 * 109.46030 * 293.03560 * 6 5 4 9 9 C 1.53120 * 109.27937 * 179.20232 * 8 6 5 10 10 C 1.53118 * 109.15374 * 302.33025 * 9 8 6 11 11 C 1.53039 * 109.27796 * 57.65686 * 10 9 8 12 12 N 1.46845 * 109.52375 * 300.82117 * 11 10 9 13 13 C 1.46905 * 110.99863 * 185.83925 * 12 11 10 14 14 H 1.09003 * 109.46942 * 189.41887 * 13 12 11 15 15 C 1.52994 * 109.46844 * 69.42209 * 13 12 11 16 16 C 1.53000 * 109.46941 * 309.42032 * 13 12 11 17 17 C 1.50702 * 109.47008 * 291.95112 * 16 13 12 18 18 H 1.07995 * 120.00136 * 354.22628 * 17 16 13 19 19 C 1.37878 * 119.99691 * 174.22133 * 17 16 13 20 20 N 1.31517 * 120.00306 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00151 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47260 * 60.00135 * 21 19 17 23 23 H 1.48502 * 109.47373 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47297 * 300.00537 * 21 19 17 25 25 H 1.08999 * 109.46714 * 59.99514 * 1 2 3 26 26 H 1.08991 * 109.47373 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46883 * 300.00556 * 1 2 3 28 28 H 1.08997 * 109.47202 * 119.99682 * 2 1 3 29 29 H 1.08997 * 109.46907 * 299.99863 * 3 2 1 30 30 H 1.08998 * 109.47400 * 60.00369 * 3 2 1 31 31 H 1.09008 * 109.46642 * 179.97438 * 3 2 1 32 32 H 1.00901 * 111.00536 * 38.95237 * 4 2 1 33 33 H 1.09008 * 109.46716 * 296.59070 * 5 4 2 34 34 H 1.09006 * 109.46761 * 56.58223 * 5 4 2 35 35 H 1.09004 * 109.50123 * 299.13269 * 8 6 5 36 36 H 1.09003 * 109.50389 * 59.25294 * 8 6 5 37 37 H 1.08995 * 109.52514 * 182.42671 * 9 8 6 38 38 H 1.09008 * 109.58174 * 62.26242 * 9 8 6 39 39 H 1.08999 * 109.50131 * 297.72021 * 10 9 8 40 40 H 1.08997 * 109.53882 * 177.61678 * 10 9 8 41 41 H 1.09001 * 109.46260 * 180.80723 * 11 10 9 42 42 H 1.09005 * 109.45438 * 60.83664 * 11 10 9 43 43 H 1.08998 * 109.47752 * 63.81839 * 15 13 12 44 44 H 1.09010 * 109.46670 * 183.81140 * 15 13 12 45 45 H 1.08999 * 109.47200 * 303.80946 * 15 13 12 46 46 H 1.09000 * 109.47384 * 51.95729 * 16 13 12 47 47 H 1.09000 * 109.46706 * 171.95640 * 16 13 12 48 48 H 0.97000 * 120.00211 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 2.0825 -2.1437 -0.9807 6 6 2.5141 -2.8364 -2.2747 7 1 2.6801 -3.8962 -2.0815 8 6 1.4168 -2.6761 -3.3294 9 6 1.8614 -3.3535 -4.6286 10 6 3.1833 -2.7344 -5.0911 11 6 4.2295 -2.8928 -3.9854 12 7 3.7576 -2.2277 -2.7643 13 6 4.7947 -2.2396 -1.7239 14 1 4.3684 -1.8943 -0.7820 15 6 5.9404 -1.3129 -2.1354 16 6 5.3273 -3.6635 -1.5511 17 6 4.2498 -4.5342 -0.9578 18 1 3.3151 -4.0961 -0.6406 19 6 4.4575 -5.8903 -0.8199 20 7 5.5960 -6.4238 -1.2057 21 14 3.1219 -6.9698 -0.0851 22 1 1.8963 -6.8775 -0.9187 23 1 3.5896 -8.3787 -0.0461 24 1 2.8178 -6.5113 1.2943 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.4496 -0.4722 -2.0022 33 1 2.8045 -2.3616 -0.1936 34 1 1.0995 -2.5092 -0.6833 35 1 0.4981 -3.1416 -2.9723 36 1 1.2407 -1.6162 -3.5132 37 1 1.1014 -3.2046 -5.3956 38 1 1.9999 -4.4207 -4.4553 39 1 3.0349 -1.6755 -5.3026 40 1 3.5273 -3.2410 -5.9928 41 1 5.1679 -2.4403 -4.3059 42 1 4.3874 -3.9524 -3.7841 43 1 5.5757 -0.2874 -2.1926 44 1 6.7398 -1.3735 -1.3967 45 1 6.3222 -1.6177 -3.1098 46 1 5.6224 -4.0614 -2.5220 47 1 6.1908 -3.6501 -0.8862 48 1 5.7422 -7.3778 -1.1084 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695905591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:58 Heat of formation + Delta-G solvation = -5.782106 kcal Electronic energy + Delta-G solvation = -23104.201662 eV Core-core repulsion = 20193.487529 eV Total energy + Delta-G solvation = -2910.714133 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.27610 -36.68010 -34.54556 -32.44213 -32.32669 -29.26787 -28.98961 -27.37605 -26.99807 -24.88251 -23.60821 -22.76983 -20.77603 -20.51341 -19.55251 -18.01820 -16.39182 -15.75307 -15.15772 -14.68789 -14.55691 -14.33582 -13.78833 -13.49334 -13.36117 -13.04902 -13.01714 -12.78060 -12.29407 -12.15659 -11.89298 -11.65407 -11.59778 -11.45172 -11.14183 -11.05722 -11.00093 -10.93366 -10.68908 -10.59358 -10.58804 -10.46667 -10.01370 -9.78754 -9.67811 -9.44382 -9.17601 -8.84721 -8.34649 -7.83292 -6.90325 -6.01732 -4.00482 3.27841 3.33721 3.35190 4.41943 4.56058 4.90933 5.06783 5.27101 5.32604 5.37573 5.41097 5.45217 5.51152 5.71423 5.79689 5.89618 5.90561 5.95874 6.01481 6.08135 6.10724 6.20944 6.24139 6.27914 6.33556 6.36723 6.44374 6.46396 6.47642 6.53219 6.64257 6.68505 6.75065 6.91596 6.97166 7.03170 7.09573 7.28547 7.53586 7.65198 7.75444 7.91846 7.97301 8.26667 8.35127 8.43211 9.03568 9.59427 11.09208 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.007637 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.674182 B = 3665.341654 C = 4077.612600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.074 3.926 3 C -0.134 4.134 4 N -0.661 5.661 5 C 0.066 3.934 6 C 0.063 3.937 7 H 0.101 0.899 8 C -0.112 4.112 9 C -0.116 4.116 10 C -0.111 4.111 11 C 0.048 3.952 12 N -0.499 5.499 13 C 0.083 3.917 14 H 0.076 0.924 15 C -0.134 4.134 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.070 0.930 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.335 0.665 33 H 0.084 0.916 34 H 0.018 0.982 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.042 0.958 46 H 0.026 0.974 47 H 0.009 0.991 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.063 10.736 -2.462 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.036 4.036 3 C -0.192 4.192 4 N -0.292 5.292 5 C -0.063 4.063 6 C -0.045 4.045 7 H 0.118 0.882 8 C -0.150 4.150 9 C -0.154 4.154 10 C -0.149 4.149 11 C -0.080 4.080 12 N -0.223 5.223 13 C -0.025 4.025 14 H 0.094 0.906 15 C -0.192 4.192 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.088 0.912 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.044 0.956 47 H 0.028 0.972 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.390 11.150 -2.438 13.597 hybrid contribution -1.501 -1.912 0.615 2.507 sum -8.891 9.238 -1.823 12.951 Atomic orbital electron populations 1.22524 0.98301 1.01515 1.01666 1.21570 0.91733 0.95613 0.94720 1.21718 1.01872 0.95186 1.00451 1.60540 1.56565 1.07960 1.04129 1.22151 0.98511 0.86842 0.98835 1.22211 0.89768 1.00743 0.91788 0.88171 1.21646 0.97625 0.99957 0.95736 1.21504 0.96972 1.00104 0.96831 1.21537 0.95456 1.00344 0.97557 1.22069 0.96480 0.98772 0.90690 1.62209 1.03294 1.52552 1.04247 1.21724 0.90661 0.96007 0.94111 0.90561 1.21771 0.97932 0.99346 1.00140 1.19830 0.96421 0.91131 0.97534 1.21502 1.01680 0.92375 1.40399 0.91238 1.25003 0.95201 0.98300 0.95668 1.69956 1.23636 1.11955 1.47458 0.86859 0.82508 0.79964 0.79956 1.20207 1.21353 1.20262 0.92823 0.92977 0.92724 0.90947 0.93148 0.93386 0.91962 0.84544 0.89813 0.96398 0.93146 0.92331 0.93220 0.92238 0.92184 0.92890 0.92009 0.93108 0.93386 0.93708 0.93854 0.95577 0.97234 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 9.16 37.16 0.34 -1.69 16 2 C 0.07 0.95 3.20 -67.71 -0.22 0.74 16 3 C -0.13 -1.56 9.52 37.16 0.35 -1.21 16 4 N -0.66 -9.76 5.92 -106.73 -0.63 -10.39 16 5 C 0.07 1.12 3.75 -3.83 -0.01 1.10 16 6 C 0.06 1.16 1.52 -67.72 -0.10 1.06 16 7 H 0.10 2.24 4.74 -51.93 -0.25 1.99 16 8 C -0.11 -1.75 5.19 -26.65 -0.14 -1.89 16 9 C -0.12 -1.80 6.00 -26.61 -0.16 -1.96 16 10 C -0.11 -1.74 6.09 -26.65 -0.16 -1.91 16 11 C 0.05 0.90 4.46 -3.83 -0.02 0.88 16 12 N -0.50 -9.31 4.09 -218.76 -0.90 -10.21 16 13 C 0.08 1.70 2.35 -67.71 -0.16 1.54 16 14 H 0.08 1.63 5.60 -51.93 -0.29 1.34 16 15 C -0.13 -2.46 9.26 37.15 0.34 -2.12 16 16 C -0.01 -0.27 4.04 -27.88 -0.11 -0.39 16 17 C -0.52 -13.64 6.86 -34.44 -0.24 -13.87 16 18 H 0.07 1.73 3.70 -52.49 -0.19 1.53 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 21 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 26 H 0.05 0.62 7.40 -51.93 -0.38 0.24 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.01 7.84 -51.93 -0.41 0.60 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.34 4.77 6.71 -39.29 -0.26 4.51 16 33 H 0.08 1.63 5.28 -51.92 -0.27 1.36 16 34 H 0.02 0.30 7.36 -51.93 -0.38 -0.09 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.86 6.64 -51.93 -0.34 0.52 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.14 6.31 -51.93 -0.33 0.81 16 42 H 0.05 1.13 6.40 -51.93 -0.33 0.80 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 45 H 0.04 0.78 6.41 -51.93 -0.33 0.45 16 46 H 0.03 0.70 5.96 -51.93 -0.31 0.39 16 47 H 0.01 0.26 8.13 -51.93 -0.42 -0.17 16 48 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -27.12 345.51 -9.70 -36.82 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.72 Total: 6.08 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -0.38 Total: -18.16 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.79 Total: -45.97 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.12 -9.70 -36.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695905591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.040 kcal (2) G-P(sol) polarization free energy of solvation -27.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds