Wall clock time and date at job start Mon Mar 30 2020 06:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46952 * 2 1 4 4 N 1.46890 * 109.47062 * 240.00033 * 2 1 3 5 5 C 1.46900 * 111.00355 * 274.99995 * 4 2 1 6 6 C 1.52994 * 109.47859 * 176.58821 * 5 4 2 7 7 H 1.08997 * 109.46565 * 173.05413 * 6 5 4 8 8 C 1.53040 * 109.46030 * 293.03560 * 6 5 4 9 9 C 1.53120 * 109.27937 * 179.20232 * 8 6 5 10 10 C 1.53118 * 109.15374 * 302.33025 * 9 8 6 11 11 C 1.53039 * 109.27796 * 57.65686 * 10 9 8 12 12 N 1.46845 * 109.52375 * 300.82117 * 11 10 9 13 13 C 1.46905 * 110.99863 * 185.83925 * 12 11 10 14 14 H 1.09003 * 109.46942 * 189.41887 * 13 12 11 15 15 C 1.52994 * 109.46844 * 69.42209 * 13 12 11 16 16 C 1.53000 * 109.46941 * 309.42032 * 13 12 11 17 17 C 1.50702 * 109.47008 * 291.95112 * 16 13 12 18 18 H 1.07995 * 120.00136 * 354.22628 * 17 16 13 19 19 C 1.37878 * 119.99691 * 174.22133 * 17 16 13 20 20 N 1.31517 * 120.00306 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00151 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47260 * 60.00135 * 21 19 17 23 23 H 1.48502 * 109.47373 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47297 * 300.00537 * 21 19 17 25 25 H 1.08999 * 109.46714 * 59.99514 * 1 2 3 26 26 H 1.08991 * 109.47373 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46883 * 300.00556 * 1 2 3 28 28 H 1.08997 * 109.47202 * 119.99682 * 2 1 3 29 29 H 1.08997 * 109.46907 * 299.99863 * 3 2 1 30 30 H 1.08998 * 109.47400 * 60.00369 * 3 2 1 31 31 H 1.09008 * 109.46642 * 179.97438 * 3 2 1 32 32 H 1.00901 * 111.00536 * 38.95237 * 4 2 1 33 33 H 1.09008 * 109.46716 * 296.59070 * 5 4 2 34 34 H 1.09006 * 109.46761 * 56.58223 * 5 4 2 35 35 H 1.09004 * 109.50123 * 299.13269 * 8 6 5 36 36 H 1.09003 * 109.50389 * 59.25294 * 8 6 5 37 37 H 1.08995 * 109.52514 * 182.42671 * 9 8 6 38 38 H 1.09008 * 109.58174 * 62.26242 * 9 8 6 39 39 H 1.08999 * 109.50131 * 297.72021 * 10 9 8 40 40 H 1.08997 * 109.53882 * 177.61678 * 10 9 8 41 41 H 1.09001 * 109.46260 * 180.80723 * 11 10 9 42 42 H 1.09005 * 109.45438 * 60.83664 * 11 10 9 43 43 H 1.08998 * 109.47752 * 63.81839 * 15 13 12 44 44 H 1.09010 * 109.46670 * 183.81140 * 15 13 12 45 45 H 1.08999 * 109.47200 * 303.80946 * 15 13 12 46 46 H 1.09000 * 109.47384 * 51.95729 * 16 13 12 47 47 H 1.09000 * 109.46706 * 171.95640 * 16 13 12 48 48 H 0.97000 * 120.00211 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 2.0825 -2.1437 -0.9807 6 6 2.5141 -2.8364 -2.2747 7 1 2.6801 -3.8962 -2.0815 8 6 1.4168 -2.6761 -3.3294 9 6 1.8614 -3.3535 -4.6286 10 6 3.1833 -2.7344 -5.0911 11 6 4.2295 -2.8928 -3.9854 12 7 3.7576 -2.2277 -2.7643 13 6 4.7947 -2.2396 -1.7239 14 1 4.3684 -1.8943 -0.7820 15 6 5.9404 -1.3129 -2.1354 16 6 5.3273 -3.6635 -1.5511 17 6 4.2498 -4.5342 -0.9578 18 1 3.3151 -4.0961 -0.6406 19 6 4.4575 -5.8903 -0.8199 20 7 5.5960 -6.4238 -1.2057 21 14 3.1219 -6.9698 -0.0851 22 1 1.8963 -6.8775 -0.9187 23 1 3.5896 -8.3787 -0.0461 24 1 2.8178 -6.5113 1.2943 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.4496 -0.4722 -2.0022 33 1 2.8045 -2.3616 -0.1936 34 1 1.0995 -2.5092 -0.6833 35 1 0.4981 -3.1416 -2.9723 36 1 1.2407 -1.6162 -3.5132 37 1 1.1014 -3.2046 -5.3956 38 1 1.9999 -4.4207 -4.4553 39 1 3.0349 -1.6755 -5.3026 40 1 3.5273 -3.2410 -5.9928 41 1 5.1679 -2.4403 -4.3059 42 1 4.3874 -3.9524 -3.7841 43 1 5.5757 -0.2874 -2.1926 44 1 6.7398 -1.3735 -1.3967 45 1 6.3222 -1.6177 -3.1098 46 1 5.6224 -4.0614 -2.5220 47 1 6.1908 -3.6501 -0.8862 48 1 5.7422 -7.3778 -1.1084 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695905591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:57 Heat of formation + Delta-G solvation = -22.267818 kcal Electronic energy + Delta-G solvation = -23104.916536 eV Core-core repulsion = 20193.487529 eV Total energy + Delta-G solvation = -2911.429007 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78375 -37.84827 -36.14298 -34.40431 -33.64467 -30.83818 -30.24225 -29.30675 -27.89232 -26.25086 -25.17946 -24.64167 -22.14812 -21.61806 -21.04678 -19.61827 -18.41732 -17.17653 -16.68133 -16.26590 -15.95437 -15.69045 -15.16193 -15.03046 -14.54712 -14.50207 -14.43420 -14.14391 -13.74630 -13.66359 -13.25996 -13.10743 -12.97431 -12.89497 -12.75879 -12.47159 -12.41154 -12.38911 -12.25087 -12.12678 -11.99837 -11.68616 -11.46941 -11.44259 -11.29079 -11.02356 -10.77447 -10.69171 -10.45978 -9.01545 -8.59733 -8.15443 -6.18816 1.35068 1.35979 1.42823 2.38985 3.13323 3.30870 3.53934 4.00474 4.06526 4.11773 4.17067 4.34828 4.40039 4.49425 4.53639 4.58577 4.67805 4.75364 4.78202 4.83782 4.85902 4.93758 4.95193 5.04495 5.06191 5.10637 5.14129 5.15025 5.19474 5.25347 5.27509 5.34247 5.35246 5.38261 5.45225 5.49463 5.54149 5.58581 5.71067 5.79629 5.90480 6.29695 6.32605 6.65493 6.69318 6.82298 6.93524 7.44254 8.96268 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.007637 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.674182 B = 3665.341654 C = 4077.612600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 C -0.128 4.128 4 N -0.662 5.662 5 C 0.078 3.922 6 C 0.062 3.938 7 H 0.057 0.943 8 C -0.104 4.104 9 C -0.116 4.116 10 C -0.103 4.103 11 C 0.050 3.950 12 N -0.482 5.482 13 C 0.092 3.908 14 H 0.070 0.930 15 C -0.126 4.126 16 C -0.003 4.003 17 C -0.518 4.518 18 H 0.082 0.918 19 C 0.002 3.998 20 N -0.934 5.934 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.290 1.290 24 H -0.269 1.269 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.343 0.657 33 H 0.053 0.947 34 H 0.025 0.975 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.005 0.995 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.000 1.000 47 H -0.024 1.024 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 12.758 -3.030 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.039 4.039 3 C -0.186 4.186 4 N -0.295 5.295 5 C -0.052 4.052 6 C -0.047 4.047 7 H 0.075 0.925 8 C -0.142 4.142 9 C -0.154 4.154 10 C -0.141 4.141 11 C -0.078 4.078 12 N -0.206 5.206 13 C -0.016 4.016 14 H 0.088 0.912 15 C -0.184 4.184 16 C -0.041 4.041 17 C -0.556 4.556 18 H 0.100 0.900 19 C -0.195 4.195 20 N -0.575 5.575 21 Si 0.767 3.233 22 H -0.191 1.191 23 H -0.216 1.216 24 H -0.194 1.194 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.023 0.977 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.018 0.982 47 H -0.006 1.006 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.977 13.194 -3.004 16.812 hybrid contribution -0.672 -2.501 0.795 2.709 sum -10.649 10.693 -2.209 15.252 Atomic orbital electron populations 1.22424 0.96553 1.01332 1.02896 1.21624 0.93137 0.95930 0.93171 1.21654 1.00887 0.94329 1.01691 1.60469 1.57401 1.06309 1.05303 1.21864 0.97850 0.88491 0.96978 1.22116 0.90594 0.98224 0.93753 0.92535 1.21594 0.96637 1.01284 0.94706 1.21518 0.97653 0.98559 0.97654 1.21494 0.94445 1.01638 0.96519 1.22066 0.98079 0.95848 0.91844 1.62327 1.02824 1.51862 1.03547 1.21554 0.91803 0.93436 0.94827 0.91161 1.21684 0.97021 0.99651 1.00033 1.19754 0.95117 0.94121 0.95108 1.21905 1.02164 0.92611 1.38906 0.89983 1.25821 0.97254 0.99971 0.96474 1.70108 1.25840 1.12038 1.49561 0.85851 0.80068 0.77858 0.79519 1.19063 1.21562 1.19355 0.91710 0.93834 0.91390 0.92506 0.92363 0.91678 0.93431 0.83745 0.92853 0.95666 0.92079 0.90396 0.90115 0.94594 0.90402 0.91623 0.91925 0.97655 0.91493 0.93783 0.93819 0.98161 1.00610 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 9.16 71.98 0.66 -2.71 16 2 C 0.07 1.69 3.20 44.92 0.14 1.84 16 3 C -0.13 -2.64 9.52 71.98 0.69 -1.96 16 4 N -0.66 -18.28 5.92 -491.57 -2.91 -21.19 16 5 C 0.08 2.58 3.75 86.30 0.32 2.91 16 6 C 0.06 2.24 1.52 44.94 0.07 2.31 16 7 H 0.06 2.58 4.74 -2.39 -0.01 2.57 16 8 C -0.10 -3.01 5.19 30.65 0.16 -2.85 16 9 C -0.12 -3.33 6.00 30.67 0.18 -3.15 16 10 C -0.10 -3.03 6.09 30.65 0.19 -2.85 16 11 C 0.05 1.89 4.46 86.33 0.39 2.27 16 12 N -0.48 -17.84 4.09 -846.02 -3.46 -21.30 16 13 C 0.09 3.85 2.35 44.91 0.11 3.96 16 14 H 0.07 3.04 5.60 -2.39 -0.01 3.03 16 15 C -0.13 -4.60 9.26 71.98 0.67 -3.94 16 16 C 0.00 -0.14 4.04 29.85 0.12 -0.02 16 17 C -0.52 -28.14 6.86 25.60 0.18 -27.97 16 18 H 0.08 4.19 3.70 -2.91 -0.01 4.18 16 19 C 0.00 0.11 5.46 84.65 0.46 0.57 16 20 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 21 Si 0.94 44.21 29.54 68.60 2.03 46.23 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 26 H 0.04 0.92 7.40 -2.39 -0.02 0.90 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.52 7.84 -2.39 -0.02 1.51 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.34 8.65 6.71 -89.69 -0.60 8.05 16 33 H 0.05 2.10 5.28 -2.38 -0.01 2.09 16 34 H 0.03 0.80 7.36 -2.38 -0.02 0.78 16 35 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.08 1.99 6.64 -2.39 -0.02 1.97 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.06 2.31 6.31 -2.39 -0.02 2.30 16 42 H 0.01 0.24 6.40 -2.38 -0.02 0.23 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.04 1.57 6.41 -2.39 -0.02 1.55 16 46 H 0.00 0.01 5.96 -2.39 -0.01 -0.01 16 47 H -0.02 -1.42 8.13 -2.39 -0.02 -1.44 16 48 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -61.20 345.51 0.58 -60.62 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.32 Total: 24.17 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 4.33 Total: -31.58 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -6.09 Total: -99.43 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -61.20 0.58 -60.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695905591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.348 kcal (2) G-P(sol) polarization free energy of solvation -61.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds