Wall clock time and date at job start Mon Mar 30 2020 08:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.39785 * 110.99635 * 2 1 4 4 C 1.54431 * 111.75941 * 189.13394 * 3 2 1 5 5 C 1.50749 * 109.03658 * 282.60881 * 4 3 2 6 6 C 1.54166 * 112.61823 * 93.01034 * 5 4 3 7 7 C 1.53820 * 111.96819 * 318.48865 * 6 5 4 8 8 H 1.09006 * 109.05290 * 79.59264 * 7 6 5 9 9 C 1.53000 * 108.99336 * 198.52634 * 7 6 5 10 10 N 1.46900 * 109.47108 * 187.07615 * 9 7 6 11 11 C 1.46899 * 111.00048 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47413 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47365 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.46935 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46956 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00346 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00215 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99581 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00121 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47067 * 90.00064 * 19 17 15 21 21 H 1.48500 * 109.47381 * 209.99949 * 19 17 15 22 22 H 1.48496 * 109.47179 * 330.00329 * 19 17 15 23 23 C 1.47629 * 111.00125 * 128.89748 * 2 1 3 24 24 H 1.08999 * 109.47498 * 56.04568 * 1 2 3 25 25 H 1.08997 * 109.46959 * 176.04863 * 1 2 3 26 26 H 1.09003 * 109.47386 * 296.04457 * 1 2 3 27 27 H 1.08998 * 109.01992 * 309.72373 * 3 2 1 28 28 H 1.09001 * 109.02181 * 68.55125 * 3 2 1 29 29 H 1.09002 * 109.54655 * 42.47626 * 4 3 2 30 30 H 1.09000 * 109.54418 * 162.73772 * 4 3 2 31 31 H 1.09006 * 108.85396 * 332.19929 * 5 4 3 32 32 H 1.09005 * 108.77198 * 213.76511 * 5 4 3 33 33 H 1.09000 * 108.98766 * 197.84328 * 6 5 4 34 34 H 1.09005 * 108.91381 * 79.08463 * 6 5 4 35 35 H 1.08997 * 109.47295 * 307.08287 * 9 7 6 36 36 H 1.09002 * 109.46898 * 67.07744 * 9 7 6 37 37 H 1.00905 * 110.99931 * 56.05334 * 10 9 7 38 38 H 1.09008 * 109.47358 * 300.00576 * 11 10 9 39 39 H 1.09003 * 109.47287 * 60.00062 * 11 10 9 40 40 H 1.09008 * 109.46593 * 299.99865 * 12 11 10 41 41 H 1.08994 * 109.47181 * 59.99623 * 12 11 10 42 42 H 1.08999 * 109.46430 * 299.99584 * 13 12 11 43 43 H 1.08993 * 109.47049 * 59.99273 * 13 12 11 44 44 H 1.08998 * 109.47750 * 299.99700 * 14 13 12 45 45 H 1.09005 * 109.47463 * 60.00269 * 14 13 12 46 46 H 0.96998 * 119.99567 * 179.97438 * 18 17 15 47 47 H 1.08995 * 109.75116 * 269.96131 * 23 2 1 48 48 H 1.09001 * 109.74538 * 30.64134 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9699 1.3050 0.0000 4 6 3.4971 1.3321 -0.2277 5 6 4.1922 0.9511 1.0546 6 6 4.4983 -0.5576 1.1374 7 6 3.3286 -1.4114 0.6187 8 1 3.3543 -1.4256 -0.4710 9 6 3.4861 -2.8411 1.1403 10 7 2.4735 -3.7039 0.5173 11 6 2.5941 -5.0874 0.9960 12 6 1.5259 -5.9540 0.3260 13 6 1.6512 -7.3949 0.8251 14 6 0.5825 -8.2612 0.1556 15 6 0.7063 -9.6805 0.6467 16 1 1.4704 -9.9388 1.3649 17 6 -0.1567 -10.6493 0.1800 18 7 -1.0875 -10.3347 -0.6942 19 14 -0.0037 -12.4084 0.7893 20 1 -0.8491 -12.5894 1.9967 21 1 -0.4539 -13.3417 -0.2745 22 1 1.4133 -12.6928 1.1301 23 6 1.9981 -0.8654 1.0726 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 -0.3634 0.4512 0.9233 27 1 1.4823 1.8726 -0.7926 28 1 1.7454 1.7717 0.9591 29 1 3.7617 0.6217 -1.0109 30 1 3.8037 2.3350 -0.5247 31 1 3.5566 1.2283 1.8956 32 1 5.1285 1.5049 1.1239 33 1 4.6975 -0.8226 2.1758 34 1 5.3852 -0.7714 0.5409 35 1 4.4810 -3.2108 0.8923 36 1 3.3547 -2.8496 2.2223 37 1 2.5331 -3.6627 -0.4892 38 1 3.5829 -5.4731 0.7473 39 1 2.4563 -5.1112 2.0770 40 1 0.5370 -5.5684 0.5745 41 1 1.6641 -5.9301 -0.7548 42 1 2.6400 -7.7805 0.5770 43 1 1.5127 -7.4183 1.9060 44 1 -0.4062 -7.8754 0.4040 45 1 0.7206 -8.2378 -0.9254 46 1 -1.6944 -11.0163 -1.0228 47 1 2.1307 -0.2828 1.9842 48 1 1.3060 -1.6869 1.2581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700808708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:40:49 Heat of formation + Delta-G solvation = -28.129139 kcal Electronic energy + Delta-G solvation = -20602.881086 eV Core-core repulsion = 17691.197914 eV Total energy + Delta-G solvation = -2911.683173 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.81240 -36.87273 -35.05513 -34.12045 -32.77178 -31.47307 -28.58080 -27.73968 -26.11260 -25.08821 -23.93842 -22.25748 -21.36799 -20.98952 -19.95853 -19.29481 -16.30050 -16.21046 -16.08963 -15.48426 -15.26240 -14.92328 -14.51433 -14.24782 -14.05249 -13.87179 -13.50519 -13.05103 -12.75322 -12.52172 -12.34725 -12.16290 -11.95410 -11.67416 -11.57008 -11.36151 -11.08451 -11.00912 -10.94261 -10.80022 -10.56324 -10.51177 -10.42103 -10.38161 -10.34137 -9.58509 -9.21377 -8.96295 -8.34806 -8.30226 -8.27027 -5.94967 -3.97010 3.34617 3.40536 3.44109 3.79957 4.18924 4.49943 4.56952 4.60807 4.66846 4.85288 4.98283 5.08413 5.20020 5.30052 5.33173 5.35246 5.40379 5.41769 5.50139 5.57043 5.58800 5.59494 5.69550 5.76395 5.80253 5.81357 5.83025 5.97134 5.98357 6.02074 6.12614 6.21435 6.30578 6.33916 6.56974 6.87931 6.98478 7.02099 7.11968 7.28999 7.31468 7.50916 7.74632 7.91049 8.06627 8.49453 9.10627 9.66625 11.16442 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.038127 B = 0.002556 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.215210 B =10950.016973 C =11494.508356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.558 5.558 3 C 0.075 3.925 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.082 4.082 8 H 0.082 0.918 9 C 0.062 3.938 10 N -0.689 5.689 11 C 0.060 3.940 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.074 3.926 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.020 0.980 27 H 0.066 0.934 28 H 0.014 0.986 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.341 0.659 38 H 0.024 0.976 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.015 0.985 45 H 0.014 0.986 46 H 0.260 0.740 47 H 0.033 0.967 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.310 25.209 2.467 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.282 5.282 3 C -0.055 4.055 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.102 4.102 8 H 0.101 0.899 9 C -0.068 4.068 10 N -0.320 5.320 11 C -0.069 4.069 12 C -0.153 4.153 13 C -0.147 4.147 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.052 4.052 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.032 0.968 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.159 0.841 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.033 0.967 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.836 25.118 2.427 26.738 hybrid contribution 0.594 -0.922 0.572 1.237 sum 9.430 24.196 2.999 26.141 Atomic orbital electron populations 1.22335 0.86641 1.02765 0.99820 1.58740 1.07526 1.13153 1.48803 1.20952 0.95587 0.89559 0.99361 1.21489 0.94388 1.01422 0.98362 1.21394 1.00252 0.95991 0.98026 1.21947 0.97908 0.94217 1.01076 1.21030 0.94042 0.93349 1.01733 0.89936 1.22019 0.93005 0.92342 0.99430 1.60481 1.50464 1.09053 1.11955 1.22058 0.97800 0.86959 1.00076 1.21626 0.98372 0.95741 0.99530 1.21586 1.00510 0.92871 0.99732 1.19090 0.93325 0.93506 0.95686 1.21300 1.15561 0.94003 1.24925 0.92803 1.25039 0.95421 0.98934 0.95182 1.69971 1.18944 1.33672 1.30999 0.86611 0.78292 0.84766 0.78430 1.20690 1.21247 1.19934 1.21870 0.96640 0.96127 0.90583 0.91870 0.90732 0.96114 0.91583 0.96766 0.90641 0.91755 0.92561 0.92406 0.92242 0.92260 0.95513 0.91388 0.84143 0.95747 0.91477 0.91732 0.92770 0.93736 0.93520 0.96626 0.96734 0.93066 0.94879 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.44 60.06 0.57 0.86 16 2 N -0.56 -5.46 4.19 -248.33 -1.04 -6.50 16 3 C 0.08 0.64 4.93 -6.74 -0.03 0.61 16 4 C -0.12 -0.91 5.65 -27.11 -0.15 -1.06 16 5 C -0.12 -0.89 5.31 -27.25 -0.14 -1.04 16 6 C -0.11 -0.91 5.29 -25.69 -0.14 -1.05 16 7 C -0.08 -0.77 1.90 -91.29 -0.17 -0.94 16 8 H 0.08 0.87 7.26 -51.93 -0.38 0.49 16 9 C 0.06 0.65 4.83 -3.82 -0.02 0.63 16 10 N -0.69 -8.54 5.70 -113.78 -0.65 -9.19 16 11 C 0.06 0.86 5.69 -3.83 -0.02 0.83 16 12 C -0.11 -1.99 5.47 -26.73 -0.15 -2.14 16 13 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 14 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 15 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 16 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.07 0.74 4.81 -4.52 -0.02 0.72 16 24 H 0.06 0.52 7.96 -51.93 -0.41 0.10 16 25 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.53 7.88 -51.93 -0.41 0.12 16 28 H 0.01 0.13 7.55 -51.93 -0.39 -0.26 16 29 H 0.07 0.65 7.11 -51.93 -0.37 0.28 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 6.58 -51.93 -0.34 0.11 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.47 7.97 -51.93 -0.41 0.05 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.03 0.28 8.13 -51.93 -0.42 -0.14 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.34 4.15 8.73 -39.29 -0.34 3.80 16 38 H 0.02 0.35 8.14 -51.92 -0.42 -0.08 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.03 0.33 6.66 -51.93 -0.35 -0.01 16 48 H 0.09 1.09 6.67 -51.93 -0.35 0.74 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -29.99 364.39 -11.07 -41.07 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -9.62 Total: -2.58 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -0.97 Total: -18.50 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.95 Total: -42.50 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.99 -11.07 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700808708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.938 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds