Wall clock time and date at job start Mon Mar 30 2020 08:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.39785 * 110.99635 * 2 1 4 4 C 1.54431 * 111.75941 * 189.13394 * 3 2 1 5 5 C 1.50749 * 109.03658 * 282.60881 * 4 3 2 6 6 C 1.54166 * 112.61823 * 93.01034 * 5 4 3 7 7 C 1.53820 * 111.96819 * 318.48865 * 6 5 4 8 8 H 1.09006 * 109.05290 * 79.59264 * 7 6 5 9 9 C 1.53000 * 108.99336 * 198.52634 * 7 6 5 10 10 N 1.46900 * 109.47108 * 187.07615 * 9 7 6 11 11 C 1.46899 * 111.00048 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47413 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47365 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.46935 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46956 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00346 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00215 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99581 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00121 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47067 * 90.00064 * 19 17 15 21 21 H 1.48500 * 109.47381 * 209.99949 * 19 17 15 22 22 H 1.48496 * 109.47179 * 330.00329 * 19 17 15 23 23 C 1.47629 * 111.00125 * 128.89748 * 2 1 3 24 24 H 1.08999 * 109.47498 * 56.04568 * 1 2 3 25 25 H 1.08997 * 109.46959 * 176.04863 * 1 2 3 26 26 H 1.09003 * 109.47386 * 296.04457 * 1 2 3 27 27 H 1.08998 * 109.01992 * 309.72373 * 3 2 1 28 28 H 1.09001 * 109.02181 * 68.55125 * 3 2 1 29 29 H 1.09002 * 109.54655 * 42.47626 * 4 3 2 30 30 H 1.09000 * 109.54418 * 162.73772 * 4 3 2 31 31 H 1.09006 * 108.85396 * 332.19929 * 5 4 3 32 32 H 1.09005 * 108.77198 * 213.76511 * 5 4 3 33 33 H 1.09000 * 108.98766 * 197.84328 * 6 5 4 34 34 H 1.09005 * 108.91381 * 79.08463 * 6 5 4 35 35 H 1.08997 * 109.47295 * 307.08287 * 9 7 6 36 36 H 1.09002 * 109.46898 * 67.07744 * 9 7 6 37 37 H 1.00905 * 110.99931 * 56.05334 * 10 9 7 38 38 H 1.09008 * 109.47358 * 300.00576 * 11 10 9 39 39 H 1.09003 * 109.47287 * 60.00062 * 11 10 9 40 40 H 1.09008 * 109.46593 * 299.99865 * 12 11 10 41 41 H 1.08994 * 109.47181 * 59.99623 * 12 11 10 42 42 H 1.08999 * 109.46430 * 299.99584 * 13 12 11 43 43 H 1.08993 * 109.47049 * 59.99273 * 13 12 11 44 44 H 1.08998 * 109.47750 * 299.99700 * 14 13 12 45 45 H 1.09005 * 109.47463 * 60.00269 * 14 13 12 46 46 H 0.96998 * 119.99567 * 179.97438 * 18 17 15 47 47 H 1.08995 * 109.75116 * 269.96131 * 23 2 1 48 48 H 1.09001 * 109.74538 * 30.64134 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9699 1.3050 0.0000 4 6 3.4971 1.3321 -0.2277 5 6 4.1922 0.9511 1.0546 6 6 4.4983 -0.5576 1.1374 7 6 3.3286 -1.4114 0.6187 8 1 3.3543 -1.4256 -0.4710 9 6 3.4861 -2.8411 1.1403 10 7 2.4735 -3.7039 0.5173 11 6 2.5941 -5.0874 0.9960 12 6 1.5259 -5.9540 0.3260 13 6 1.6512 -7.3949 0.8251 14 6 0.5825 -8.2612 0.1556 15 6 0.7063 -9.6805 0.6467 16 1 1.4704 -9.9388 1.3649 17 6 -0.1567 -10.6493 0.1800 18 7 -1.0875 -10.3347 -0.6942 19 14 -0.0037 -12.4084 0.7893 20 1 -0.8491 -12.5894 1.9967 21 1 -0.4539 -13.3417 -0.2745 22 1 1.4133 -12.6928 1.1301 23 6 1.9981 -0.8654 1.0726 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 -0.3634 0.4512 0.9233 27 1 1.4823 1.8726 -0.7926 28 1 1.7454 1.7717 0.9591 29 1 3.7617 0.6217 -1.0109 30 1 3.8037 2.3350 -0.5247 31 1 3.5566 1.2283 1.8956 32 1 5.1285 1.5049 1.1239 33 1 4.6975 -0.8226 2.1758 34 1 5.3852 -0.7714 0.5409 35 1 4.4810 -3.2108 0.8923 36 1 3.3547 -2.8496 2.2223 37 1 2.5331 -3.6627 -0.4892 38 1 3.5829 -5.4731 0.7473 39 1 2.4563 -5.1112 2.0770 40 1 0.5370 -5.5684 0.5745 41 1 1.6641 -5.9301 -0.7548 42 1 2.6400 -7.7805 0.5770 43 1 1.5127 -7.4183 1.9060 44 1 -0.4062 -7.8754 0.4040 45 1 0.7206 -8.2378 -0.9254 46 1 -1.6944 -11.0163 -1.0228 47 1 2.1307 -0.2828 1.9842 48 1 1.3060 -1.6869 1.2581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700808708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:40:47 Heat of formation + Delta-G solvation = -45.861798 kcal Electronic energy + Delta-G solvation = -20603.650032 eV Core-core repulsion = 17691.197914 eV Total energy + Delta-G solvation = -2912.452118 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.54409 -37.97592 -36.32004 -35.32564 -34.29647 -32.83769 -30.04463 -28.63260 -27.22704 -26.12180 -25.27559 -23.24382 -22.76702 -21.74854 -21.63762 -20.03341 -18.42818 -17.14147 -16.93626 -16.52316 -16.43730 -16.16800 -15.69637 -15.49301 -15.06781 -14.78825 -14.49240 -14.20507 -13.91690 -13.73060 -13.70272 -13.34524 -13.04372 -12.93266 -12.82187 -12.63454 -12.44196 -12.28650 -12.12744 -12.07711 -11.77785 -11.69970 -11.50049 -11.35735 -11.30830 -11.21156 -11.12309 -10.88060 -10.55140 -9.29615 -9.07463 -8.19618 -6.31169 1.39520 1.41419 1.52549 2.41140 3.06468 3.12981 3.23186 3.86976 3.92804 4.01150 4.09104 4.14817 4.25233 4.26603 4.39991 4.49885 4.56453 4.59057 4.61683 4.65365 4.68362 4.75982 4.84077 4.85533 4.87719 4.92773 4.96543 5.03690 5.08744 5.13280 5.19236 5.26507 5.28113 5.30399 5.35371 5.37662 5.46968 5.56130 5.59681 5.78996 5.87582 6.14602 6.24973 6.26443 6.50759 6.59745 6.86556 7.38104 8.92383 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.038127 B = 0.002556 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.215210 B =10950.016973 C =11494.508356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.567 5.567 3 C 0.073 3.927 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.073 4.073 8 H 0.073 0.927 9 C 0.066 3.934 10 N -0.692 5.692 11 C 0.072 3.928 12 C -0.104 4.104 13 C -0.097 4.097 14 C 0.023 3.977 15 C -0.545 4.545 16 H 0.060 0.940 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.263 1.263 23 C 0.079 3.921 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.022 0.978 27 H 0.071 0.929 28 H 0.012 0.988 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.068 0.932 37 H 0.343 0.657 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.050 0.950 44 H -0.011 1.011 45 H -0.011 1.011 46 H 0.264 0.736 47 H 0.033 0.967 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.753 25.645 3.241 27.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.291 5.291 3 C -0.057 4.057 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.149 4.149 7 C -0.092 4.092 8 H 0.091 0.909 9 C -0.064 4.064 10 N -0.323 5.323 11 C -0.057 4.057 12 C -0.142 4.142 13 C -0.135 4.135 14 C -0.014 4.014 15 C -0.583 4.583 16 H 0.078 0.922 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.187 1.187 23 C -0.048 4.048 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.030 0.970 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.161 0.839 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.007 0.993 45 H 0.007 0.993 46 H 0.072 0.928 47 H 0.051 0.949 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.292 25.575 3.207 27.754 hybrid contribution 0.105 -1.015 0.298 1.063 sum 10.396 24.560 3.505 26.899 Atomic orbital electron populations 1.22325 0.86530 1.02253 1.00373 1.58785 1.07801 1.13862 1.48667 1.21015 0.96343 0.88868 0.99439 1.21476 0.93645 1.02046 0.98156 1.21379 1.00756 0.95625 0.97697 1.21924 0.97291 0.94375 1.01291 1.20933 0.94351 0.92929 1.01020 0.90899 1.22033 0.92585 0.92475 0.99289 1.60434 1.51563 1.08136 1.12213 1.21820 0.96624 0.87478 0.99742 1.21451 0.99144 0.94064 0.99571 1.21395 0.98589 0.94114 0.99388 1.19021 0.93833 0.94039 0.94534 1.21754 1.15924 0.95334 1.25266 0.92202 1.26037 0.94856 1.04045 0.95183 1.70109 1.19793 1.35442 1.32189 0.85423 0.78907 0.78525 0.78047 1.19693 1.20655 1.18680 1.21772 0.96536 0.95664 0.90801 0.90903 0.91847 0.95893 0.91023 0.96975 0.91534 0.90302 0.93006 0.91153 0.91857 0.91714 0.94945 0.91330 0.83948 0.95151 0.91254 0.92738 0.92989 0.93190 0.93118 0.99298 0.99257 0.92765 0.94861 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.44 127.69 1.21 1.79 16 2 N -0.57 -10.70 4.19 -939.57 -3.94 -14.64 16 3 C 0.07 1.15 4.93 88.07 0.43 1.59 16 4 C -0.12 -1.57 5.65 30.35 0.17 -1.40 16 5 C -0.12 -1.53 5.31 30.26 0.16 -1.37 16 6 C -0.11 -1.58 5.29 31.27 0.17 -1.41 16 7 C -0.07 -1.28 1.90 -11.23 -0.02 -1.31 16 8 H 0.07 1.45 7.26 -2.38 -0.02 1.44 16 9 C 0.07 1.28 4.83 86.30 0.42 1.70 16 10 N -0.69 -16.54 5.70 -513.88 -2.93 -19.47 16 11 C 0.07 1.99 5.69 86.30 0.49 2.48 16 12 C -0.10 -3.61 5.47 30.59 0.17 -3.45 16 13 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 14 C 0.02 1.25 4.97 29.85 0.15 1.40 16 15 C -0.54 -31.99 9.11 25.60 0.23 -31.76 16 16 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 17 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 18 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 19 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 C 0.08 1.53 4.81 85.45 0.41 1.94 16 24 H 0.07 1.14 7.96 -2.39 -0.02 1.12 16 25 H 0.06 1.26 7.94 -2.39 -0.02 1.24 16 26 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.07 1.05 7.88 -2.39 -0.02 1.03 16 28 H 0.01 0.20 7.55 -2.39 -0.02 0.18 16 29 H 0.07 1.05 7.11 -2.39 -0.02 1.03 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.74 6.58 -2.38 -0.02 0.72 16 32 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.06 0.87 7.97 -2.39 -0.02 0.85 16 34 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.03 0.61 8.13 -2.39 -0.02 0.59 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.34 8.06 8.73 -89.69 -0.78 7.28 16 38 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 44 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 46 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 47 H 0.03 0.64 6.66 -2.39 -0.02 0.62 16 48 H 0.08 1.76 6.67 -2.39 -0.02 1.75 16 Total: -1.00 -64.18 364.39 0.15 -64.03 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.10 Total: 14.55 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 4.60 Total: -33.47 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -6.58 Total: -92.23 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -64.18 0.15 -64.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700808708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.166 kcal (2) G-P(sol) polarization free energy of solvation -64.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds