Wall clock time and date at job start Mon Mar 30 2020 06:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46946 * 2 1 4 4 N 1.46901 * 109.47112 * 119.99777 * 2 1 3 5 5 C 1.46901 * 110.99915 * 324.02386 * 4 2 1 6 6 C 1.52993 * 109.46893 * 199.89287 * 5 4 2 7 7 H 1.09003 * 109.53772 * 303.63254 * 6 5 4 8 8 C 1.53099 * 109.48970 * 183.53955 * 6 5 4 9 9 C 1.53117 * 109.15550 * 182.39598 * 8 6 5 10 10 C 1.53045 * 109.27916 * 57.65727 * 9 8 6 11 11 N 1.46846 * 109.51901 * 300.81720 * 10 9 8 12 12 C 1.46853 * 111.20036 * 61.74468 * 11 10 9 13 13 C 1.46898 * 110.99864 * 87.97582 * 4 2 1 14 14 H 1.08997 * 109.47085 * 186.74638 * 13 4 2 15 15 C 1.53000 * 109.46902 * 306.74590 * 13 4 2 16 16 C 1.52999 * 109.47106 * 66.74335 * 13 4 2 17 17 C 1.50696 * 109.46979 * 65.00065 * 16 13 4 18 18 H 1.08005 * 120.00253 * 0.02562 * 17 16 13 19 19 C 1.37884 * 120.00071 * 179.97438 * 17 16 13 20 20 N 1.31512 * 119.99515 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99828 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47612 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47091 * 120.00591 * 21 19 17 24 24 H 1.48503 * 109.46982 * 239.99937 * 21 19 17 25 25 H 1.08995 * 109.47218 * 305.50744 * 1 2 3 26 26 H 1.09003 * 109.46844 * 65.50819 * 1 2 3 27 27 H 1.08998 * 109.46952 * 185.49974 * 1 2 3 28 28 H 1.09003 * 109.47143 * 240.00481 * 2 1 3 29 29 H 1.08998 * 109.46903 * 184.90201 * 3 2 1 30 30 H 1.09004 * 109.47028 * 304.90130 * 3 2 1 31 31 H 1.08994 * 109.47070 * 64.89982 * 3 2 1 32 32 H 1.08997 * 109.47143 * 79.88817 * 5 4 2 33 33 H 1.09003 * 109.47195 * 319.88732 * 5 4 2 34 34 H 1.08998 * 109.52308 * 62.49625 * 8 6 5 35 35 H 1.08994 * 109.57721 * 302.33342 * 8 6 5 36 36 H 1.09005 * 109.50645 * 297.71628 * 9 8 6 37 37 H 1.08999 * 109.53772 * 177.61496 * 9 8 6 38 38 H 1.09003 * 109.46273 * 180.80636 * 10 9 8 39 39 H 1.08994 * 109.46458 * 60.83051 * 10 9 8 40 40 H 1.00896 * 110.99982 * 185.83915 * 11 10 9 41 41 H 1.08999 * 109.46186 * 58.26616 * 12 11 10 42 42 H 1.08993 * 109.46076 * 178.25047 * 12 11 10 43 43 H 1.09003 * 109.47776 * 66.13072 * 15 13 4 44 44 H 1.09001 * 109.47081 * 186.12982 * 15 13 4 45 45 H 1.09002 * 109.47545 * 306.12457 * 15 13 4 46 46 H 1.09004 * 109.47328 * 184.99863 * 16 13 4 47 47 H 1.08997 * 109.47008 * 304.99898 * 16 13 4 48 48 H 0.97003 * 119.99355 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.1488 -0.4278 2.3525 6 6 1.9113 -0.7226 3.6457 7 1 2.2757 -1.7497 3.6280 8 6 0.9776 -0.5320 4.8440 9 6 1.7635 -0.7703 6.1362 10 6 2.9528 0.1915 6.1891 11 7 3.8159 -0.0310 5.0221 12 6 3.0964 0.2378 3.7704 13 6 2.1495 -2.1356 0.9580 14 1 2.3976 -2.6394 1.8922 15 6 0.8266 -2.6835 0.4189 16 6 3.2592 -2.3837 -0.0656 17 6 4.5826 -1.9559 0.5146 18 1 4.6277 -1.5483 1.5138 19 6 5.7360 -2.0859 -0.2296 20 7 5.6811 -2.5827 -1.4461 21 14 7.3763 -1.5550 0.4894 22 1 7.1685 -1.0328 1.8639 23 1 8.2963 -2.7198 0.5367 24 1 7.9682 -0.4909 -0.3607 25 1 -0.3633 0.5968 0.8365 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3633 -1.0229 0.0985 28 1 1.8934 -0.5138 -0.8901 29 1 3.1265 1.4438 -0.0878 30 1 1.6067 1.9811 -0.8429 31 1 1.7501 1.9304 0.9306 32 1 0.2676 -1.0669 2.2965 33 1 0.8406 0.6177 2.3427 34 1 0.1548 -1.2441 4.7815 35 1 0.5816 0.4835 4.8405 36 1 2.1256 -1.7983 6.1577 37 1 1.1152 -0.5948 6.9948 38 1 3.5227 0.0146 7.1012 39 1 2.5895 1.2191 6.1814 40 1 4.6560 0.5245 5.0825 41 1 2.7323 1.2652 3.7742 42 1 3.7705 0.0944 2.9260 43 1 0.6327 -2.2603 -0.5668 44 1 0.8871 -3.7691 0.3426 45 1 0.0174 -2.4115 1.0967 46 1 3.2963 -3.4450 -0.3114 47 1 3.0556 -1.8085 -0.9688 48 1 6.4925 -2.6738 -1.9698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710010212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:26 Heat of formation + Delta-G solvation = -6.821596 kcal Electronic energy + Delta-G solvation = -22856.972206 eV Core-core repulsion = 19946.212998 eV Total energy + Delta-G solvation = -2910.759208 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.38156 -37.74379 -33.35565 -32.68771 -31.74770 -31.25414 -28.57219 -27.89105 -26.24907 -24.87523 -23.42293 -22.88734 -21.44028 -20.70905 -19.40234 -17.86161 -16.34242 -15.98933 -15.65211 -14.98662 -14.65660 -14.33762 -14.22103 -13.58659 -13.34764 -13.06629 -13.03702 -12.68700 -12.48529 -12.31777 -11.97877 -11.81452 -11.66664 -11.57919 -11.27883 -11.21395 -10.93680 -10.84368 -10.70321 -10.53587 -10.40706 -10.31209 -10.08254 -9.98723 -9.87795 -9.51627 -9.06198 -8.84136 -8.18592 -8.15578 -7.35956 -5.82069 -3.78502 3.42562 3.50329 3.56799 4.45854 4.52800 4.63101 5.02313 5.05803 5.19582 5.31349 5.44470 5.53743 5.55448 5.59231 5.68868 5.77533 5.79095 5.83238 5.83603 5.91252 5.99103 6.01774 6.04420 6.07509 6.12485 6.16738 6.22836 6.24448 6.27636 6.32504 6.40151 6.56334 6.73812 6.75476 6.78378 6.80422 6.89054 7.11062 7.36263 7.64972 7.65902 7.78185 8.03799 8.14678 8.20992 8.66959 9.28374 9.82838 11.30169 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.007919 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.609051 B = 3535.169930 C = 4760.053358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.077 3.923 3 C -0.133 4.133 4 N -0.501 5.501 5 C 0.058 3.942 6 C -0.077 4.077 7 H 0.081 0.919 8 C -0.115 4.115 9 C -0.115 4.115 10 C 0.059 3.941 11 N -0.691 5.691 12 C 0.073 3.927 13 C 0.086 3.914 14 H 0.070 0.930 15 C -0.186 4.186 16 C 0.030 3.970 17 C -0.481 4.481 18 H 0.063 0.937 19 C 0.049 3.951 20 N -0.906 5.906 21 Si 0.885 3.115 22 H -0.271 1.271 23 H -0.289 1.289 24 H -0.289 1.289 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.022 0.978 40 H 0.340 0.660 41 H 0.016 0.984 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.043 0.957 46 H 0.016 0.984 47 H 0.018 0.982 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.658 6.288 10.081 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.032 4.032 3 C -0.191 4.191 4 N -0.224 5.224 5 C -0.071 4.071 6 C -0.096 4.096 7 H 0.099 0.901 8 C -0.154 4.154 9 C -0.153 4.153 10 C -0.071 4.071 11 N -0.322 5.322 12 C -0.056 4.056 13 C -0.022 4.022 14 H 0.088 0.912 15 C -0.245 4.245 16 C -0.007 4.007 17 C -0.520 4.520 18 H 0.082 0.918 19 C -0.150 4.150 20 N -0.547 5.547 21 Si 0.714 3.286 22 H -0.195 1.195 23 H -0.216 1.216 24 H -0.216 1.216 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.157 0.843 41 H 0.034 0.966 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.034 0.966 47 H 0.036 0.964 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.185 5.767 10.034 15.416 hybrid contribution 0.073 0.969 0.099 0.976 sum -10.112 6.735 10.132 15.820 Atomic orbital electron populations 1.22983 0.98684 1.02767 1.01097 1.21648 0.91203 0.95366 0.94967 1.21722 1.02283 0.95333 0.99755 1.62199 1.47274 1.10236 1.02663 1.22145 0.94055 0.99738 0.91141 1.21138 0.94583 1.01151 0.92718 0.90116 1.21608 0.97919 1.00859 0.94984 1.21548 0.96151 1.00480 0.97125 1.21879 0.94667 0.96672 0.93885 1.60241 1.08112 1.61747 1.02060 1.21917 0.96425 0.95264 0.91984 1.21940 0.93973 0.85879 1.00397 0.91154 1.22776 0.99644 1.01226 1.00837 1.19208 0.92012 0.96388 0.93058 1.21222 0.91028 1.38909 1.00840 0.91831 1.24993 0.98887 0.96080 0.94991 1.69979 1.27722 1.47143 1.09879 0.86629 0.84582 0.78000 0.79367 1.19545 1.21593 1.21593 0.93157 0.93312 0.91150 0.89284 0.91603 0.93719 0.93778 0.95019 0.92026 0.92362 0.92832 0.91208 0.92310 0.91553 0.96011 0.84294 0.96579 0.88145 0.92457 0.93094 0.93796 0.96614 0.96350 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.78 7.58 37.16 0.28 -2.50 16 2 C 0.08 1.30 2.23 -67.71 -0.15 1.15 16 3 C -0.13 -2.11 9.42 37.16 0.35 -1.76 16 4 N -0.50 -8.94 3.39 -218.72 -0.74 -9.68 16 5 C 0.06 0.88 2.89 -3.83 -0.01 0.86 16 6 C -0.08 -1.15 2.40 -90.55 -0.22 -1.37 16 7 H 0.08 1.41 6.70 -51.93 -0.35 1.07 16 8 C -0.12 -1.44 5.28 -26.62 -0.14 -1.58 16 9 C -0.12 -1.36 6.09 -26.65 -0.16 -1.52 16 10 C 0.06 0.71 6.55 -3.83 -0.03 0.69 16 11 N -0.69 -10.12 6.85 -113.81 -0.78 -10.90 16 12 C 0.07 1.15 5.70 -3.83 -0.02 1.13 16 13 C 0.09 1.70 2.15 -67.71 -0.15 1.56 16 14 H 0.07 1.46 6.58 -51.93 -0.34 1.12 16 15 C -0.19 -3.15 7.35 37.16 0.27 -2.88 16 16 C 0.03 0.76 4.39 -27.89 -0.12 0.63 16 17 C -0.48 -13.22 8.84 -34.44 -0.30 -13.53 16 18 H 0.06 1.75 7.48 -52.48 -0.39 1.36 16 19 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 20 N -0.91 -27.30 13.29 55.43 0.74 -26.57 16 21 Si 0.89 22.14 29.54 -169.99 -5.02 17.11 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H 0.05 0.66 6.53 -51.93 -0.34 0.32 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.00 4.07 -51.93 -0.21 0.79 16 28 H 0.09 1.76 5.44 -51.93 -0.28 1.47 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.65 7.24 -51.93 -0.38 0.27 16 32 H 0.03 0.47 5.69 -51.93 -0.30 0.17 16 33 H 0.06 0.89 6.07 -51.93 -0.32 0.58 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.34 4.58 8.90 -39.29 -0.35 4.23 16 41 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.10 1.92 7.48 -51.93 -0.39 1.53 16 43 H 0.06 0.97 5.96 -51.93 -0.31 0.66 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.66 5.33 -51.93 -0.28 0.38 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.49 6.15 -51.93 -0.32 0.17 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -28.90 346.33 -9.83 -38.73 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.75 Total: 3.88 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -0.49 Total: -17.80 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.78 Total: -47.14 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.90 -9.83 -38.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710010212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.913 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds