Wall clock time and date at job start Mon Mar 30 2020 06:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46946 * 2 1 4 4 N 1.46901 * 109.47112 * 119.99777 * 2 1 3 5 5 C 1.46901 * 110.99915 * 324.02386 * 4 2 1 6 6 C 1.52993 * 109.46893 * 199.89287 * 5 4 2 7 7 H 1.09003 * 109.53772 * 303.63254 * 6 5 4 8 8 C 1.53099 * 109.48970 * 183.53955 * 6 5 4 9 9 C 1.53117 * 109.15550 * 182.39598 * 8 6 5 10 10 C 1.53045 * 109.27916 * 57.65727 * 9 8 6 11 11 N 1.46846 * 109.51901 * 300.81720 * 10 9 8 12 12 C 1.46853 * 111.20036 * 61.74468 * 11 10 9 13 13 C 1.46898 * 110.99864 * 87.97582 * 4 2 1 14 14 H 1.08997 * 109.47085 * 186.74638 * 13 4 2 15 15 C 1.53000 * 109.46902 * 306.74590 * 13 4 2 16 16 C 1.52999 * 109.47106 * 66.74335 * 13 4 2 17 17 C 1.50696 * 109.46979 * 65.00065 * 16 13 4 18 18 H 1.08005 * 120.00253 * 0.02562 * 17 16 13 19 19 C 1.37884 * 120.00071 * 179.97438 * 17 16 13 20 20 N 1.31512 * 119.99515 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99828 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47612 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47091 * 120.00591 * 21 19 17 24 24 H 1.48503 * 109.46982 * 239.99937 * 21 19 17 25 25 H 1.08995 * 109.47218 * 305.50744 * 1 2 3 26 26 H 1.09003 * 109.46844 * 65.50819 * 1 2 3 27 27 H 1.08998 * 109.46952 * 185.49974 * 1 2 3 28 28 H 1.09003 * 109.47143 * 240.00481 * 2 1 3 29 29 H 1.08998 * 109.46903 * 184.90201 * 3 2 1 30 30 H 1.09004 * 109.47028 * 304.90130 * 3 2 1 31 31 H 1.08994 * 109.47070 * 64.89982 * 3 2 1 32 32 H 1.08997 * 109.47143 * 79.88817 * 5 4 2 33 33 H 1.09003 * 109.47195 * 319.88732 * 5 4 2 34 34 H 1.08998 * 109.52308 * 62.49625 * 8 6 5 35 35 H 1.08994 * 109.57721 * 302.33342 * 8 6 5 36 36 H 1.09005 * 109.50645 * 297.71628 * 9 8 6 37 37 H 1.08999 * 109.53772 * 177.61496 * 9 8 6 38 38 H 1.09003 * 109.46273 * 180.80636 * 10 9 8 39 39 H 1.08994 * 109.46458 * 60.83051 * 10 9 8 40 40 H 1.00896 * 110.99982 * 185.83915 * 11 10 9 41 41 H 1.08999 * 109.46186 * 58.26616 * 12 11 10 42 42 H 1.08993 * 109.46076 * 178.25047 * 12 11 10 43 43 H 1.09003 * 109.47776 * 66.13072 * 15 13 4 44 44 H 1.09001 * 109.47081 * 186.12982 * 15 13 4 45 45 H 1.09002 * 109.47545 * 306.12457 * 15 13 4 46 46 H 1.09004 * 109.47328 * 184.99863 * 16 13 4 47 47 H 1.08997 * 109.47008 * 304.99898 * 16 13 4 48 48 H 0.97003 * 119.99355 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.1488 -0.4278 2.3525 6 6 1.9113 -0.7226 3.6457 7 1 2.2757 -1.7497 3.6280 8 6 0.9776 -0.5320 4.8440 9 6 1.7635 -0.7703 6.1362 10 6 2.9528 0.1915 6.1891 11 7 3.8159 -0.0310 5.0221 12 6 3.0964 0.2378 3.7704 13 6 2.1495 -2.1356 0.9580 14 1 2.3976 -2.6394 1.8922 15 6 0.8266 -2.6835 0.4189 16 6 3.2592 -2.3837 -0.0656 17 6 4.5826 -1.9559 0.5146 18 1 4.6277 -1.5483 1.5138 19 6 5.7360 -2.0859 -0.2296 20 7 5.6811 -2.5827 -1.4461 21 14 7.3763 -1.5550 0.4894 22 1 7.1685 -1.0328 1.8639 23 1 8.2963 -2.7198 0.5367 24 1 7.9682 -0.4909 -0.3607 25 1 -0.3633 0.5968 0.8365 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3633 -1.0229 0.0985 28 1 1.8934 -0.5138 -0.8901 29 1 3.1265 1.4438 -0.0878 30 1 1.6067 1.9811 -0.8429 31 1 1.7501 1.9304 0.9306 32 1 0.2676 -1.0669 2.2965 33 1 0.8406 0.6177 2.3427 34 1 0.1548 -1.2441 4.7815 35 1 0.5816 0.4835 4.8405 36 1 2.1256 -1.7983 6.1577 37 1 1.1152 -0.5948 6.9948 38 1 3.5227 0.0146 7.1012 39 1 2.5895 1.2191 6.1814 40 1 4.6560 0.5245 5.0825 41 1 2.7323 1.2652 3.7742 42 1 3.7705 0.0944 2.9260 43 1 0.6327 -2.2603 -0.5668 44 1 0.8871 -3.7691 0.3426 45 1 0.0174 -2.4115 1.0967 46 1 3.2963 -3.4450 -0.3114 47 1 3.0556 -1.8085 -0.9688 48 1 6.4925 -2.6738 -1.9698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710010212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:26 Heat of formation + Delta-G solvation = -24.985533 kcal Electronic energy + Delta-G solvation = -22857.759853 eV Core-core repulsion = 19946.212998 eV Total energy + Delta-G solvation = -2911.546856 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.70682 -38.93240 -35.28775 -33.87163 -33.49280 -32.35580 -30.02421 -29.47606 -27.71716 -26.16060 -24.78267 -24.51935 -22.59796 -22.26418 -20.50075 -19.32157 -18.26365 -17.42879 -17.03187 -16.59960 -16.06825 -15.84606 -15.30961 -14.75709 -14.71505 -14.51588 -14.32473 -14.02072 -13.79391 -13.66454 -13.65706 -13.10961 -13.07341 -12.93066 -12.85235 -12.59883 -12.56077 -12.38079 -12.30119 -12.08227 -11.80807 -11.65117 -11.53771 -11.18336 -11.15092 -11.01838 -10.89347 -10.75659 -10.41424 -9.26527 -8.73656 -8.05402 -6.07770 1.40507 1.42268 1.55832 2.50199 3.16624 3.31940 3.38961 3.99834 4.00935 4.06626 4.18444 4.22212 4.32427 4.38721 4.48359 4.51393 4.58069 4.61070 4.67616 4.72243 4.78190 4.82273 4.85189 4.91586 4.94241 5.00069 5.05419 5.10162 5.14254 5.16906 5.17461 5.28069 5.29821 5.35737 5.40266 5.51702 5.58804 5.61236 5.64160 5.79004 5.97639 6.25926 6.42765 6.56752 6.64329 6.68712 7.06941 7.57281 9.07046 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.007919 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.609051 B = 3535.169930 C = 4760.053358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.074 3.926 3 C -0.126 4.126 4 N -0.518 5.518 5 C 0.064 3.936 6 C -0.074 4.074 7 H 0.050 0.950 8 C -0.109 4.109 9 C -0.115 4.115 10 C 0.058 3.942 11 N -0.708 5.708 12 C 0.081 3.919 13 C 0.099 3.901 14 H 0.058 0.942 15 C -0.176 4.176 16 C 0.037 3.963 17 C -0.483 4.483 18 H 0.059 0.941 19 C -0.006 4.006 20 N -0.942 5.942 21 Si 0.949 3.051 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.032 0.968 40 H 0.343 0.657 41 H 0.025 0.975 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.071 0.929 46 H -0.015 1.015 47 H -0.003 1.003 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.410 7.720 12.118 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.034 4.034 3 C -0.184 4.184 4 N -0.241 5.241 5 C -0.064 4.064 6 C -0.093 4.093 7 H 0.068 0.932 8 C -0.147 4.147 9 C -0.152 4.152 10 C -0.071 4.071 11 N -0.340 5.340 12 C -0.048 4.048 13 C -0.010 4.010 14 H 0.076 0.924 15 C -0.234 4.234 16 C 0.000 4.000 17 C -0.521 4.521 18 H 0.077 0.923 19 C -0.201 4.201 20 N -0.586 5.586 21 Si 0.776 3.224 22 H -0.188 1.188 23 H -0.213 1.213 24 H -0.212 1.212 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.161 0.839 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.003 0.997 47 H 0.015 0.985 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.947 7.206 12.089 18.460 hybrid contribution 0.638 0.529 -0.531 0.984 sum -11.309 7.735 11.558 17.925 Atomic orbital electron populations 1.22840 0.95795 1.03258 1.02533 1.21617 0.93492 0.95238 0.93092 1.21652 1.00251 0.95070 1.01406 1.62076 1.49221 1.08733 1.04031 1.22172 0.93738 1.00757 0.89722 1.21090 0.94983 0.99037 0.94202 0.93180 1.21565 0.97494 1.01975 0.93701 1.21572 0.96332 0.99487 0.97853 1.21974 0.94653 0.97357 0.93131 1.60233 1.08872 1.62314 1.02544 1.21693 0.95890 0.95912 0.91290 1.21537 0.93701 0.87705 0.98022 0.92404 1.22651 0.98617 1.00948 1.01202 1.19059 0.93368 0.93821 0.93727 1.21495 0.92264 1.37874 1.00480 0.92276 1.25780 1.02512 0.96417 0.95374 1.70104 1.28601 1.48648 1.11203 0.85624 0.80347 0.77595 0.78858 1.18792 1.21253 1.21199 0.91381 0.92122 0.91151 0.92956 0.94760 0.91782 0.92205 0.93847 0.90504 0.91261 0.91457 0.92707 0.89645 0.90229 0.94963 0.83924 0.95698 0.92305 0.92570 0.93258 0.91062 0.99678 0.98489 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.76 7.58 71.98 0.55 -4.21 16 2 C 0.07 2.48 2.23 44.92 0.10 2.58 16 3 C -0.13 -3.91 9.42 71.98 0.68 -3.23 16 4 N -0.52 -18.43 3.39 -845.89 -2.87 -21.30 16 5 C 0.06 1.81 2.89 86.30 0.25 2.06 16 6 C -0.07 -2.12 2.40 -10.75 -0.03 -2.15 16 7 H 0.05 1.76 6.70 -2.39 -0.02 1.74 16 8 C -0.11 -2.38 5.28 30.67 0.16 -2.22 16 9 C -0.11 -2.38 6.09 30.65 0.19 -2.19 16 10 C 0.06 1.26 6.55 86.33 0.57 1.83 16 11 N -0.71 -20.09 6.85 -513.99 -3.52 -23.61 16 12 C 0.08 2.52 5.70 86.33 0.49 3.01 16 13 C 0.10 3.99 2.15 44.92 0.10 4.09 16 14 H 0.06 2.48 6.58 -2.39 -0.02 2.46 16 15 C -0.18 -5.84 7.35 71.98 0.53 -5.31 16 16 C 0.04 1.96 4.39 29.85 0.13 2.09 16 17 C -0.48 -27.57 8.84 25.60 0.23 -27.34 16 18 H 0.06 3.38 7.48 -2.91 -0.02 3.36 16 19 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 20 N -0.94 -58.79 13.29 21.45 0.28 -58.51 16 21 Si 0.95 46.64 29.54 68.60 2.03 48.66 16 22 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H 0.07 1.52 6.53 -2.39 -0.02 1.50 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.80 4.07 -2.39 -0.01 1.79 16 28 H 0.05 2.14 5.44 -2.39 -0.01 2.13 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.06 1.64 7.24 -2.39 -0.02 1.62 16 32 H 0.04 1.14 5.69 -2.39 -0.01 1.12 16 33 H 0.08 1.96 6.07 -2.39 -0.01 1.95 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.34 9.03 8.90 -89.70 -0.80 8.23 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 2.31 7.48 -2.39 -0.02 2.29 16 43 H 0.06 1.88 5.96 -2.39 -0.01 1.87 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.07 1.98 5.33 -2.39 -0.01 1.97 16 46 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 47 H 0.00 -0.17 6.15 -2.39 -0.01 -0.19 16 48 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -64.77 346.33 0.44 -64.33 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.12 Total: 21.30 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 4.40 Total: -30.87 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -6.10 Total: -103.42 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -64.77 0.44 -64.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710010212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.341 kcal (2) G-P(sol) polarization free energy of solvation -64.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds