Wall clock time and date at job start Mon Mar 30 2020 08:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99961 * 2 1 4 4 C 1.46900 * 111.00021 * 123.94918 * 2 1 3 5 5 H 1.08995 * 109.47353 * 300.00049 * 4 2 1 6 6 C 1.53007 * 109.47038 * 60.00495 * 4 2 1 7 7 C 1.52996 * 109.47062 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.46994 * 299.99520 * 7 6 4 9 9 C 1.52997 * 109.46950 * 60.00304 * 8 7 6 10 10 H 1.09003 * 109.47023 * 59.99957 * 9 8 7 11 11 N 1.46904 * 109.47156 * 179.97438 * 9 8 7 12 12 C 1.46893 * 111.00069 * 275.00185 * 11 9 8 13 13 C 1.52997 * 109.47217 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47596 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47600 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47460 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00179 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00472 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00306 * 20 18 16 23 23 H 1.48504 * 109.46636 * 59.99865 * 20 18 16 24 24 C 1.53000 * 109.47342 * 299.99808 * 9 8 7 25 25 H 1.09000 * 109.47077 * 296.04545 * 1 2 3 26 26 H 1.08996 * 109.46828 * 56.05148 * 1 2 3 27 27 H 1.09001 * 109.46718 * 176.04649 * 1 2 3 28 28 H 1.08997 * 109.47239 * 183.95639 * 3 2 1 29 29 H 1.09006 * 109.46565 * 303.95171 * 3 2 1 30 30 H 1.08996 * 109.47584 * 63.94718 * 3 2 1 31 31 H 1.09003 * 109.47111 * 59.99658 * 6 4 2 32 32 H 1.09001 * 109.46663 * 300.00011 * 6 4 2 33 33 H 1.09001 * 109.46940 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47449 * 59.99850 * 7 6 4 35 35 H 1.08995 * 109.47086 * 300.00183 * 8 7 6 36 36 H 1.08997 * 109.46695 * 180.02562 * 8 7 6 37 37 H 1.00899 * 110.99773 * 38.95846 * 11 9 8 38 38 H 1.08997 * 109.47527 * 60.00089 * 12 11 9 39 39 H 1.08999 * 109.47583 * 299.99798 * 12 11 9 40 40 H 1.09002 * 109.47542 * 59.99569 * 13 12 11 41 41 H 1.09006 * 109.46910 * 299.99720 * 13 12 11 42 42 H 1.09003 * 109.47604 * 59.99424 * 14 13 12 43 43 H 1.08999 * 109.47292 * 299.99789 * 14 13 12 44 44 H 1.09005 * 109.46800 * 60.00280 * 15 14 13 45 45 H 1.08998 * 109.47382 * 300.00079 * 15 14 13 46 46 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.47259 * 180.02562 * 24 9 8 48 48 H 1.08995 * 109.47087 * 300.00362 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.6460 -0.3199 2.0688 6 6 1.5050 -2.2125 1.0493 7 6 2.0527 -3.0100 2.2345 8 6 3.5822 -2.9872 2.2012 9 6 4.0727 -1.5407 2.2896 10 1 3.7228 -1.0946 3.2206 11 7 5.5413 -1.5188 2.2583 12 6 6.0996 -1.7238 3.6014 13 6 7.6275 -1.6941 3.5286 14 6 8.2091 -1.9082 4.9274 15 6 9.7371 -1.8791 4.8546 16 6 10.3099 -2.0894 6.2324 17 1 9.6501 -2.2293 7.0760 18 6 11.6763 -2.1020 6.4166 19 7 12.4797 -1.9311 5.3895 20 14 12.3863 -2.3620 8.1247 21 1 13.8693 -2.3338 8.0538 22 1 11.9128 -1.2821 9.0272 23 1 11.9412 -3.6774 8.6507 24 6 3.5250 -0.7431 1.1044 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5739 -0.8525 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0827 1.3433 -0.0709 29 1 1.5898 1.9163 -0.8525 30 1 1.7043 1.8724 0.9232 31 1 1.8545 -2.6584 0.1181 32 1 0.4153 -2.2287 1.0734 33 1 1.7029 -4.0405 2.1718 34 1 1.7028 -2.5639 3.1655 35 1 3.9321 -3.4333 1.2703 36 1 3.9724 -3.5558 3.0453 37 1 5.8993 -2.2036 1.6095 38 1 5.7726 -2.6893 3.9874 39 1 5.7524 -0.9312 4.2642 40 1 7.9542 -0.7284 3.1428 41 1 7.9752 -2.4866 2.8658 42 1 7.8825 -2.8740 5.3129 43 1 7.8616 -1.1161 5.5906 44 1 10.0641 -0.9133 4.4691 45 1 10.0844 -2.6714 4.1915 46 1 13.4410 -1.9396 5.5190 47 1 3.8748 0.2873 1.1671 48 1 3.8748 -1.1892 0.1735 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715491945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:30 Heat of formation + Delta-G solvation = -31.347829 kcal Electronic energy + Delta-G solvation = -20572.233854 eV Core-core repulsion = 17660.411109 eV Total energy + Delta-G solvation = -2911.822745 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.76963 -37.15483 -35.30749 -33.69602 -32.10968 -30.45862 -29.47448 -28.04525 -26.86904 -24.48841 -24.07242 -22.01129 -21.47609 -21.03650 -20.03297 -19.78821 -16.61388 -16.14715 -15.56247 -15.37604 -15.09442 -14.79443 -14.47227 -14.34531 -14.32915 -13.88439 -13.41553 -13.01784 -12.89884 -12.61649 -12.42651 -12.12399 -11.98961 -11.68479 -11.64503 -11.55312 -11.34804 -11.24519 -10.98105 -10.80045 -10.65434 -10.60130 -10.45850 -10.39162 -10.25891 -9.59549 -9.22264 -8.97983 -8.63213 -8.30969 -8.27895 -5.95355 -3.97549 3.35577 3.39716 3.42294 3.56667 4.12928 4.47585 4.49626 4.68527 4.76396 4.87973 4.92248 4.97327 5.07785 5.18526 5.22746 5.29831 5.33175 5.33971 5.37640 5.39896 5.46086 5.55748 5.59172 5.66831 5.71785 5.78998 5.84203 5.91342 5.95657 5.99697 6.13127 6.13619 6.23301 6.32849 6.55248 6.75488 6.79270 6.86482 7.00451 7.10789 7.27807 7.48117 7.73549 7.90070 8.05926 8.48703 9.09782 9.65997 11.15968 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.042340 B = 0.002490 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.150968 B =11243.811927 C =11573.438349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.543 5.543 3 C 0.019 3.981 4 C 0.085 3.915 5 H 0.039 0.961 6 C -0.112 4.112 7 C -0.114 4.114 8 C -0.150 4.150 9 C 0.090 3.910 10 H 0.073 0.927 11 N -0.686 5.686 12 C 0.060 3.940 13 C -0.116 4.116 14 C -0.109 4.109 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.053 0.947 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.287 1.287 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.100 4.100 25 H 0.023 0.977 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.340 0.660 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.015 0.985 45 H 0.014 0.986 46 H 0.260 0.740 47 H 0.071 0.929 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.203 1.616 -10.975 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.267 5.267 3 C -0.129 4.129 4 C -0.023 4.023 5 H 0.057 0.943 6 C -0.150 4.150 7 C -0.152 4.152 8 C -0.189 4.189 9 C -0.021 4.021 10 H 0.091 0.909 11 N -0.316 5.316 12 C -0.068 4.068 13 C -0.154 4.154 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.559 4.559 17 H 0.071 0.929 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.139 4.139 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.158 0.842 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.033 0.967 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.799 2.105 -11.418 27.383 hybrid contribution 0.015 -0.695 1.831 1.958 sum -24.785 1.410 -9.587 26.612 Atomic orbital electron populations 1.22431 0.87710 1.02276 1.00292 1.62010 1.07548 1.13852 1.43262 1.22459 1.01625 0.88539 1.00237 1.21669 0.95502 0.93934 0.91206 0.94334 1.21629 0.99948 0.94268 0.99150 1.21448 0.95456 1.00047 0.98294 1.22303 0.96144 0.98283 1.02218 1.21524 0.88086 0.93891 0.98610 0.90877 1.60575 1.05206 1.56000 1.09773 1.22087 0.96245 0.99196 0.89321 1.21637 0.92408 1.02021 0.99290 1.21584 0.99531 0.99822 0.93740 1.19086 0.88554 0.97147 0.96797 1.21255 0.91463 1.49017 0.94140 0.92856 1.25039 0.97333 0.95478 0.96719 1.69962 1.03350 1.50374 1.29875 0.86666 0.77838 0.78708 0.84829 1.21304 1.20269 1.20300 1.21589 0.92504 1.01086 0.98687 0.95843 0.91527 0.91104 0.90504 0.91583 0.95744 0.91023 0.92081 0.91782 0.92126 0.91605 0.91901 0.84183 0.95577 0.91470 0.91688 0.92778 0.93735 0.93508 0.96623 0.96746 0.93002 0.91070 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.21 60.07 0.55 0.70 16 2 N -0.54 -4.76 4.89 -243.17 -1.19 -5.95 16 3 C 0.02 0.16 9.11 60.06 0.55 0.70 16 4 C 0.09 0.76 1.94 -67.71 -0.13 0.63 16 5 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 6 C -0.11 -0.90 4.97 -26.73 -0.13 -1.03 16 7 C -0.11 -0.92 5.92 -26.73 -0.16 -1.08 16 8 C -0.15 -1.41 5.17 -26.73 -0.14 -1.55 16 9 C 0.09 0.94 2.47 -67.71 -0.17 0.78 16 10 H 0.07 0.82 7.80 -51.93 -0.40 0.42 16 11 N -0.69 -8.58 6.25 -106.73 -0.67 -9.24 16 12 C 0.06 0.86 5.48 -3.83 -0.02 0.84 16 13 C -0.12 -2.01 5.47 -26.73 -0.15 -2.15 16 14 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 15 C 0.02 0.56 4.97 -27.89 -0.14 0.43 16 16 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 20 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C -0.10 -0.99 4.45 -26.73 -0.12 -1.11 16 25 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 27 H 0.07 0.46 6.30 -51.93 -0.33 0.14 16 28 H 0.08 0.65 6.24 -51.93 -0.32 0.33 16 29 H 0.07 0.47 8.12 -51.93 -0.42 0.04 16 30 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.44 6.40 -51.93 -0.33 0.11 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 36 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 37 H 0.34 4.06 8.47 -39.29 -0.33 3.73 16 38 H 0.03 0.37 7.44 -51.93 -0.39 -0.02 16 39 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.07 0.76 6.35 -51.93 -0.33 0.43 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -30.23 364.95 -10.79 -41.02 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -9.55 Total: -2.38 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -0.60 Total: -19.18 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -1.12 Total: -41.98 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.23 -10.79 -41.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715491945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.672 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds