Wall clock time and date at job start Mon Mar 30 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.60947 * 2 1 4 4 N 1.45996 * 109.74892 * 239.56964 * 2 1 3 5 5 C 1.39659 * 122.80704 * 293.84866 * 4 2 1 6 6 C 1.39299 * 117.91707 * 162.18645 * 5 4 2 7 7 C 1.38026 * 120.48043 * 179.12737 * 6 5 4 8 8 C 1.38370 * 120.15297 * 359.97438 * 7 6 5 9 9 Cl 1.73598 * 120.06060 * 180.21195 * 8 7 6 10 10 C 1.38198 * 119.88209 * 0.19185 * 8 7 6 11 11 C 1.39026 * 120.28882 * 359.93054 * 10 8 7 12 12 S 1.76409 * 118.84740 * 179.75017 * 11 10 8 13 13 C 1.53587 * 109.60886 * 120.33921 * 2 1 3 14 14 H 1.09005 * 109.78829 * 173.67983 * 13 2 1 15 15 C 1.50698 * 109.79439 * 294.47068 * 13 2 1 16 16 H 1.08002 * 119.99550 * 359.97438 * 15 13 2 17 17 C 1.37871 * 120.00044 * 180.02562 * 15 13 2 18 18 N 1.31518 * 120.00089 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99975 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47503 * 89.99453 * 19 17 15 21 21 H 1.48505 * 109.47069 * 209.99651 * 19 17 15 22 22 H 1.48505 * 109.46987 * 329.99264 * 19 17 15 23 23 H 1.09000 * 109.46879 * 300.00366 * 1 2 3 24 24 H 1.09002 * 109.47113 * 60.00025 * 1 2 3 25 25 H 1.09001 * 109.46794 * 180.02562 * 1 2 3 26 26 H 0.96996 * 118.59701 * 113.83369 * 4 2 1 27 27 H 1.08004 * 119.75855 * 359.12312 * 6 5 4 28 28 H 1.07997 * 119.92349 * 180.02562 * 7 6 5 29 29 H 1.07997 * 119.85398 * 179.91155 * 10 8 7 30 30 H 0.97003 * 119.99830 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8959 1.0268 0.0000 4 7 2.0234 -0.6960 -1.1848 5 6 1.8323 -2.0636 -1.3934 6 6 1.9934 -2.5548 -2.6869 7 6 1.8350 -3.9006 -2.9496 8 6 1.5143 -4.7754 -1.9265 9 17 1.3210 -6.4683 -2.2586 10 6 1.3487 -4.2990 -0.6399 11 6 1.5041 -2.9445 -0.3682 12 16 1.2773 -2.3768 1.2866 13 6 2.0455 -0.7308 1.2487 14 1 3.1296 -0.8310 1.1964 15 6 1.6635 0.0406 2.4856 16 1 1.1080 0.9626 2.3968 17 6 2.0240 -0.4300 3.7303 18 7 2.7008 -1.5525 3.8383 19 14 1.5498 0.5259 5.2636 20 1 0.2243 0.0619 5.7461 21 1 2.5678 0.3017 6.3212 22 1 1.4805 1.9741 4.9423 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.5041 -0.1867 -1.8559 27 1 2.2441 -1.8777 -3.4901 28 1 1.9624 -4.2718 -3.9557 29 1 1.0970 -4.9820 0.1580 30 1 2.9541 -1.8837 4.7141 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214441968.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:52 Heat of formation + Delta-G solvation = 11.874937 kcal Electronic energy + Delta-G solvation = -16055.693079 eV Core-core repulsion = 13388.155609 eV Total energy + Delta-G solvation = -2667.537470 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 269.034 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.03617 -36.71997 -35.67178 -33.29473 -31.25805 -30.39425 -28.05380 -27.10587 -24.09043 -22.42013 -21.97690 -19.61358 -17.55489 -16.68707 -16.46823 -15.39208 -14.92658 -14.52626 -13.95503 -13.55007 -13.47519 -13.14387 -13.00596 -12.51921 -11.90372 -11.80554 -11.40856 -11.30522 -11.19751 -11.08070 -10.76510 -10.69007 -10.44313 -10.10990 -9.65613 -9.28261 -9.04119 -8.78287 -8.59314 -7.14629 -6.40938 -5.92844 -4.45886 1.74648 1.83320 2.55637 2.93097 3.18995 3.21325 3.22378 3.91728 3.97749 4.15284 4.19650 5.10030 5.25694 5.45217 5.61572 5.80163 5.88053 5.95485 6.07443 6.23978 6.40267 6.47269 6.59920 6.63423 6.76408 6.93317 7.02300 7.13143 7.49063 7.68057 7.92502 8.11868 8.49768 9.12528 10.64008 Molecular weight = 269.03amu Principal moments of inertia in cm(-1) A = 0.030201 B = 0.005922 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.904879 B = 4726.779093 C = 5377.552117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.088 0.912 4 N -0.745 5.745 5 C 0.210 3.790 6 C -0.174 4.174 7 C -0.094 4.094 8 C -0.073 4.073 9 Cl -0.096 7.096 10 C -0.065 4.065 11 C -0.131 4.131 12 S -0.139 6.139 13 C 0.077 3.923 14 H 0.053 0.947 15 C -0.494 4.494 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.839 5.839 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.269 1.269 23 H 0.072 0.928 24 H 0.037 0.963 25 H 0.067 0.933 26 H 0.391 0.609 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 -0.701 -9.547 9.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.106 0.894 4 N -0.373 5.373 5 C 0.100 3.900 6 C -0.199 4.199 7 C -0.117 4.117 8 C -0.102 4.102 9 Cl -0.068 7.068 10 C -0.092 4.092 11 C -0.248 4.248 12 S 0.114 5.886 13 C -0.049 4.049 14 H 0.071 0.929 15 C -0.539 4.539 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.473 5.473 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.194 1.194 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.223 0.777 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.146 0.854 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.135 -1.450 -8.183 8.581 hybrid contribution 0.625 0.933 -0.513 1.235 sum -1.510 -0.517 -8.697 8.842 Atomic orbital electron populations 1.22296 0.95275 1.03215 1.00768 1.21255 0.94381 0.95465 0.84687 0.89390 1.44715 1.62865 1.04955 1.24768 1.17541 0.95998 0.84350 0.92075 1.20579 1.09473 0.95241 0.94619 1.20460 1.01211 0.92223 0.97804 1.20423 1.10958 0.83804 0.95064 1.98303 1.96537 1.16251 1.95684 1.20529 1.00211 0.93657 0.94781 1.21883 1.08187 0.94657 1.00100 1.86575 1.72745 1.27243 1.02037 1.21550 0.97950 0.90433 0.94955 0.92872 1.20824 1.36512 1.07449 0.89083 0.90605 1.25205 0.94013 0.95046 0.99915 1.70002 1.33449 1.18718 1.25119 0.86378 0.78659 0.80250 0.81715 1.20051 1.20777 1.19359 0.90872 0.94380 0.91442 0.77656 0.86188 0.86016 0.85422 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 8.79 37.16 0.33 -2.53 16 2 C 0.15 2.81 3.28 -67.90 -0.22 2.58 16 3 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 4 N -0.75 -12.76 5.17 -52.04 -0.27 -13.03 16 5 C 0.21 3.89 6.18 -83.58 -0.52 3.37 16 6 C -0.17 -2.74 9.76 -39.26 -0.38 -3.12 16 7 C -0.09 -1.44 9.82 -39.61 -0.39 -1.83 16 8 C -0.07 -1.23 6.32 -39.55 -0.25 -1.48 16 9 Cl -0.10 -1.43 28.96 -51.86 -1.50 -2.94 16 10 C -0.07 -1.25 9.50 -39.30 -0.37 -1.62 16 11 C -0.13 -2.71 5.66 -38.97 -0.22 -2.93 16 12 S -0.14 -3.29 18.53 -107.50 -1.99 -5.28 16 13 C 0.08 1.79 2.38 -27.58 -0.07 1.72 16 14 H 0.05 1.39 8.14 -51.93 -0.42 0.96 16 15 C -0.49 -12.08 7.90 -34.44 -0.27 -12.35 16 16 H 0.08 1.77 7.14 -52.49 -0.37 1.39 16 17 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.84 -22.46 12.30 55.43 0.68 -21.78 16 19 Si 0.90 19.41 29.54 -169.99 -5.02 14.39 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H 0.07 1.35 7.05 -51.93 -0.37 0.99 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.35 6.09 -51.93 -0.32 1.03 16 26 H 0.39 5.49 8.76 -40.82 -0.36 5.13 16 27 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 276.64 15.07 4.17 4.17 Total: -1.00 -26.37 276.64 -9.48 -35.85 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -3.09 Total: 5.14 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -2.46 Total: -16.53 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.41 Total: -34.81 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -1.99 Total: -5.28 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.50 Total: -2.94 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.37 -9.48 -35.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214441968.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.724 kcal (2) G-P(sol) polarization free energy of solvation -26.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds