Wall clock time and date at job start Mon Mar 30 2020 07:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.60947 * 2 1 4 4 N 1.45996 * 109.74892 * 239.56964 * 2 1 3 5 5 C 1.39659 * 122.80704 * 293.84866 * 4 2 1 6 6 C 1.39299 * 117.91707 * 162.18645 * 5 4 2 7 7 C 1.38026 * 120.48043 * 179.12737 * 6 5 4 8 8 C 1.38370 * 120.15297 * 359.97438 * 7 6 5 9 9 Cl 1.73598 * 120.06060 * 180.21195 * 8 7 6 10 10 C 1.38198 * 119.88209 * 0.19185 * 8 7 6 11 11 C 1.39026 * 120.28882 * 359.93054 * 10 8 7 12 12 S 1.76409 * 118.84740 * 179.75017 * 11 10 8 13 13 C 1.53587 * 109.60886 * 120.33921 * 2 1 3 14 14 H 1.09005 * 109.78829 * 173.67983 * 13 2 1 15 15 C 1.50698 * 109.79439 * 294.47068 * 13 2 1 16 16 H 1.08002 * 119.99550 * 359.97438 * 15 13 2 17 17 C 1.37871 * 120.00044 * 180.02562 * 15 13 2 18 18 N 1.31518 * 120.00089 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99975 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47503 * 89.99453 * 19 17 15 21 21 H 1.48505 * 109.47069 * 209.99651 * 19 17 15 22 22 H 1.48505 * 109.46987 * 329.99264 * 19 17 15 23 23 H 1.09000 * 109.46879 * 300.00366 * 1 2 3 24 24 H 1.09002 * 109.47113 * 60.00025 * 1 2 3 25 25 H 1.09001 * 109.46794 * 180.02562 * 1 2 3 26 26 H 0.96996 * 118.59701 * 113.83369 * 4 2 1 27 27 H 1.08004 * 119.75855 * 359.12312 * 6 5 4 28 28 H 1.07997 * 119.92349 * 180.02562 * 7 6 5 29 29 H 1.07997 * 119.85398 * 179.91155 * 10 8 7 30 30 H 0.97003 * 119.99830 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8959 1.0268 0.0000 4 7 2.0234 -0.6960 -1.1848 5 6 1.8323 -2.0636 -1.3934 6 6 1.9934 -2.5548 -2.6869 7 6 1.8350 -3.9006 -2.9496 8 6 1.5143 -4.7754 -1.9265 9 17 1.3210 -6.4683 -2.2586 10 6 1.3487 -4.2990 -0.6399 11 6 1.5041 -2.9445 -0.3682 12 16 1.2773 -2.3768 1.2866 13 6 2.0455 -0.7308 1.2487 14 1 3.1296 -0.8310 1.1964 15 6 1.6635 0.0406 2.4856 16 1 1.1080 0.9626 2.3968 17 6 2.0240 -0.4300 3.7303 18 7 2.7008 -1.5525 3.8383 19 14 1.5498 0.5259 5.2636 20 1 0.2243 0.0619 5.7461 21 1 2.5678 0.3017 6.3212 22 1 1.4805 1.9741 4.9423 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.5041 -0.1867 -1.8559 27 1 2.2441 -1.8777 -3.4901 28 1 1.9624 -4.2718 -3.9557 29 1 1.0970 -4.9820 0.1580 30 1 2.9541 -1.8837 4.7141 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214441968.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:51 Heat of formation + Delta-G solvation = -2.136717 kcal Electronic energy + Delta-G solvation = -16056.300670 eV Core-core repulsion = 13388.155609 eV Total energy + Delta-G solvation = -2668.145061 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 269.034 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.43360 -38.13771 -37.02697 -35.07594 -32.79466 -31.79319 -29.61774 -28.67913 -25.82412 -23.80612 -23.47506 -21.13154 -19.18653 -18.31210 -17.88647 -16.93299 -16.65336 -16.04547 -15.45986 -15.07580 -14.97605 -14.61663 -14.45359 -14.12584 -13.40278 -13.24682 -12.95039 -12.78883 -12.74202 -12.66481 -12.36352 -12.22149 -11.85964 -11.68989 -11.36788 -10.82071 -10.60542 -10.51020 -10.21509 -8.61349 -8.26022 -7.66439 -6.41232 0.36394 0.44988 1.09856 1.38098 1.43979 1.52768 1.54757 2.26637 2.35122 2.60741 2.76938 3.21198 3.92457 4.08995 4.22560 4.37513 4.47451 4.49561 4.59803 4.89702 4.99325 5.04430 5.18256 5.21218 5.24048 5.40156 5.45988 5.58205 5.73624 5.89874 6.40657 6.60909 6.90196 7.21544 8.75218 Molecular weight = 269.03amu Principal moments of inertia in cm(-1) A = 0.030201 B = 0.005922 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.904879 B = 4726.779093 C = 5377.552117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.156 3.844 3 H 0.108 0.892 4 N -0.738 5.738 5 C 0.199 3.801 6 C -0.162 4.162 7 C -0.079 4.079 8 C -0.078 4.078 9 Cl -0.078 7.078 10 C -0.077 4.077 11 C -0.156 4.156 12 S -0.203 6.203 13 C 0.084 3.916 14 H 0.011 0.989 15 C -0.506 4.506 16 H 0.086 0.914 17 C 0.021 3.979 18 N -0.879 5.879 19 Si 0.966 3.034 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.254 1.254 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.409 0.591 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.116 0.884 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.861 0.144 -12.139 12.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.048 3.952 3 H 0.126 0.874 4 N -0.368 5.368 5 C 0.089 3.911 6 C -0.186 4.186 7 C -0.102 4.102 8 C -0.108 4.108 9 Cl -0.049 7.049 10 C -0.102 4.102 11 C -0.273 4.273 12 S 0.048 5.952 13 C -0.042 4.042 14 H 0.029 0.971 15 C -0.549 4.549 16 H 0.104 0.896 17 C -0.186 4.186 18 N -0.515 5.515 19 Si 0.791 3.209 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.178 1.178 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.245 0.755 27 H 0.178 0.822 28 H 0.176 0.824 29 H 0.134 0.866 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.398 -0.586 -10.825 11.103 hybrid contribution 0.726 0.526 0.113 0.904 sum -1.672 -0.060 -10.712 10.842 Atomic orbital electron populations 1.22162 0.94564 1.02037 1.01740 1.21131 0.94861 0.95752 0.83454 0.87436 1.44568 1.62946 1.04695 1.24549 1.17792 0.95936 0.84624 0.92737 1.20978 1.07467 0.96024 0.94124 1.20930 0.98516 0.91801 0.98910 1.20527 1.10569 0.85180 0.94510 1.98311 1.96432 1.14752 1.95443 1.20522 1.00774 0.93124 0.95828 1.21730 1.11437 0.95811 0.98363 1.86510 1.73854 1.28700 1.06179 1.21375 0.95481 0.90264 0.97078 0.97051 1.21169 1.36154 1.07881 0.89729 0.89613 1.26010 0.93940 0.95709 1.02898 1.70156 1.35408 1.20545 1.25343 0.85406 0.77791 0.79632 0.78104 1.20347 1.21008 1.17779 0.91617 0.91537 0.93651 0.75534 0.82231 0.82353 0.86591 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 8.79 71.98 0.63 -4.54 16 2 C 0.16 5.73 3.28 45.29 0.15 5.88 16 3 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 4 N -0.74 -23.84 5.17 -318.55 -1.65 -25.49 16 5 C 0.20 7.01 6.18 38.35 0.24 7.25 16 6 C -0.16 -4.43 9.76 22.47 0.22 -4.21 16 7 C -0.08 -2.12 9.82 22.25 0.22 -1.90 16 8 C -0.08 -2.47 6.32 22.29 0.14 -2.33 16 9 Cl -0.08 -2.16 28.96 -2.72 -0.08 -2.24 16 10 C -0.08 -2.94 9.50 22.45 0.21 -2.73 16 11 C -0.16 -6.51 5.66 22.66 0.13 -6.39 16 12 S -0.20 -9.99 18.53 -56.49 -1.05 -11.04 16 13 C 0.08 4.02 2.38 30.04 0.07 4.09 16 14 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 15 C -0.51 -25.23 7.90 25.60 0.20 -25.03 16 16 H 0.09 3.99 7.14 -2.91 -0.02 3.96 16 17 C 0.02 1.10 5.30 84.65 0.45 1.55 16 18 N -0.88 -49.20 12.30 21.45 0.26 -48.93 16 19 Si 0.97 40.53 29.54 68.60 2.03 42.55 16 20 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 23 H 0.06 2.39 7.05 -2.39 -0.02 2.37 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.04 1.81 6.09 -2.39 -0.01 1.79 16 26 H 0.41 10.17 8.76 -92.71 -0.81 9.36 16 27 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 29 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 30 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -59.59 276.64 2.53 -57.05 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.36 Total: 16.45 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 2.66 Total: -28.35 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -1.38 Total: -74.42 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: -9.99 SS G_CDS: -1.05 Total: -11.04 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.08 Total: -2.24 kcal Total: -59.59 2.53 -57.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214441968.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.916 kcal (2) G-P(sol) polarization free energy of solvation -59.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds