Wall clock time and date at job start Mon Mar 30 2020 07:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00398 * 2 1 4 4 C 1.50696 * 109.46850 * 66.04557 * 3 2 1 5 5 H 1.08000 * 120.00228 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00054 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99972 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99985 * 179.97438 * 6 4 3 9 9 H 1.48510 * 109.46795 * 90.00219 * 8 6 4 10 10 H 1.48502 * 109.47216 * 210.00271 * 8 6 4 11 11 H 1.48494 * 109.47355 * 330.00545 * 8 6 4 12 12 C 1.38903 * 110.99929 * 236.05059 * 2 1 3 13 13 C 1.39061 * 120.18341 * 64.20541 * 12 2 1 14 14 Cl 1.73597 * 119.97951 * 359.97438 * 13 12 2 15 15 C 1.38030 * 120.04530 * 180.26102 * 13 12 2 16 16 C 1.38631 * 120.42494 * 359.73899 * 15 13 12 17 17 C 1.37705 * 120.37010 * 0.02562 * 16 15 13 18 18 C 1.39828 * 119.94005 * 359.97438 * 17 16 15 19 19 C 1.47296 * 120.20667 * 179.97438 * 18 17 16 20 20 O 1.21521 * 120.00085 * 179.97438 * 19 18 17 21 21 O 1.34764 * 120.00148 * 359.72596 * 19 18 17 22 22 H 1.08995 * 109.47342 * 183.95584 * 1 2 3 23 23 H 1.09004 * 109.46629 * 303.95275 * 1 2 3 24 24 H 1.09002 * 109.47282 * 63.94763 * 1 2 3 25 25 H 1.08999 * 109.47585 * 186.05055 * 3 2 1 26 26 H 1.09003 * 109.47284 * 306.05163 * 3 2 1 27 27 H 0.96995 * 119.99775 * 179.97438 * 7 6 4 28 28 H 1.08005 * 119.78768 * 179.72220 * 15 13 12 29 29 H 1.08003 * 119.81635 * 179.97438 * 16 15 13 30 30 H 1.08003 * 120.02963 * 180.02562 * 17 16 15 31 31 H 0.96694 * 117.00083 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0747 1.5112 2.0488 6 6 2.0269 3.3494 1.5285 7 7 2.7113 4.0022 0.6146 8 14 1.5819 4.1871 3.1377 9 1 2.6586 3.9510 4.1330 10 1 1.4293 5.6467 2.9103 11 1 0.3042 3.6297 3.6492 12 6 1.9667 -0.7242 -1.0757 13 6 1.7289 -0.2956 -2.3771 14 17 0.8071 1.1479 -2.6602 15 6 2.2204 -1.0204 -3.4441 16 6 2.9572 -2.1748 -3.2288 17 6 3.2071 -2.6123 -1.9472 18 6 2.7166 -1.8900 -0.8550 19 6 2.9800 -2.3529 0.5182 20 8 2.5523 -1.7220 1.4647 21 8 3.6909 -3.4790 0.7250 22 1 -0.3634 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8525 24 1 -0.3634 0.4513 -0.9232 25 1 3.0798 1.3444 -0.1083 26 1 1.5611 1.9274 -0.8309 27 1 2.9852 4.9185 0.7764 28 1 2.0294 -0.6861 -4.4532 29 1 3.3366 -2.7345 -4.0709 30 1 3.7821 -3.5122 -1.7858 31 1 3.8376 -3.7431 1.6436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234262946.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:55 Heat of formation + Delta-G solvation = -66.409897 kcal Electronic energy + Delta-G solvation = -18613.265253 eV Core-core repulsion = 15499.580226 eV Total energy + Delta-G solvation = -3113.685026 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.56182 -40.10946 -37.77580 -37.41264 -36.72903 -34.67928 -32.31425 -31.02035 -29.15770 -26.91899 -25.44898 -24.35287 -22.58945 -21.66137 -19.03769 -18.66561 -18.18635 -17.28113 -16.81008 -16.72822 -16.39536 -16.00095 -15.44462 -15.35987 -14.75134 -14.58651 -14.27608 -14.01400 -13.34979 -12.99974 -12.86097 -12.80156 -12.65420 -12.41832 -12.35445 -12.06646 -12.00265 -11.92905 -11.42355 -11.26322 -10.59837 -10.00979 -9.65437 -8.92612 -8.18422 -6.26119 -0.36594 0.08857 1.07067 1.37238 1.39441 1.50483 1.65449 2.19420 2.39521 2.65102 3.10221 3.14809 3.85255 3.95421 4.15027 4.28473 4.31788 4.55514 4.65444 4.79284 4.98652 5.11429 5.15401 5.21835 5.24914 5.37439 5.63625 5.70496 5.75157 6.09792 6.19889 6.73458 6.85578 7.19891 7.40019 8.91895 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.018817 B = 0.007778 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.630047 B = 3599.142326 C = 4600.595232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.509 5.509 3 C 0.202 3.798 4 C -0.518 4.518 5 H 0.053 0.947 6 C 0.004 3.996 7 N -0.930 5.930 8 Si 0.965 3.035 9 H -0.277 1.277 10 H -0.277 1.277 11 H -0.267 1.267 12 C 0.146 3.854 13 C -0.106 4.106 14 Cl -0.061 7.061 15 C -0.065 4.065 16 C -0.116 4.116 17 C -0.043 4.043 18 C -0.130 4.130 19 C 0.516 3.484 20 O -0.506 6.506 21 O -0.507 6.507 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.041 0.959 25 H -0.020 1.020 26 H 0.024 0.976 27 H 0.264 0.736 28 H 0.164 0.836 29 H 0.189 0.811 30 H 0.176 0.824 31 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.411 -15.589 -9.560 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.229 5.229 3 C 0.078 3.922 4 C -0.556 4.556 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.790 3.210 9 H -0.203 1.203 10 H -0.202 1.202 11 H -0.191 1.191 12 C 0.049 3.951 13 C -0.135 4.135 14 Cl -0.032 7.032 15 C -0.084 4.084 16 C -0.134 4.134 17 C -0.062 4.062 18 C -0.133 4.133 19 C 0.359 3.641 20 O -0.394 6.394 21 O -0.321 6.321 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.059 0.941 25 H -0.001 1.001 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.182 0.818 29 H 0.206 0.794 30 H 0.193 0.807 31 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 0.350 -15.201 -9.283 17.814 hybrid contribution -0.362 1.342 1.003 1.715 sum -0.013 -13.858 -8.279 16.143 Atomic orbital electron populations 1.22325 0.85882 1.00830 1.01716 1.59417 1.08549 1.16417 1.38558 1.19734 0.92529 0.82386 0.97509 1.21387 1.34689 0.97235 1.02307 0.92845 1.25811 0.95218 0.97857 1.00517 1.70081 1.39422 1.11752 1.35816 0.85448 0.78779 0.77471 0.79295 1.20298 1.20227 1.19129 1.19197 0.94207 0.92989 0.88668 1.22140 1.03333 0.92447 0.95628 1.98357 1.72293 1.36956 1.95592 1.21677 0.94307 0.93962 0.98454 1.21568 0.98104 0.95620 0.98060 1.21875 0.94835 0.98710 0.90739 1.19177 1.04961 0.97159 0.91974 1.20694 0.75416 0.78348 0.89689 1.91048 1.48288 1.55468 1.44587 1.84462 1.68277 1.40781 1.38607 0.92022 0.92068 0.94061 1.00141 0.95826 0.92767 0.81828 0.79406 0.80706 0.71083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.08 127.69 1.16 2.84 16 2 N -0.51 -24.48 2.64 -723.60 -1.91 -26.40 16 3 C 0.20 11.46 4.19 85.56 0.36 11.82 16 4 C -0.52 -31.52 8.46 25.60 0.22 -31.30 16 5 H 0.05 3.29 7.12 -2.91 -0.02 3.27 16 6 C 0.00 0.23 5.46 84.66 0.46 0.69 16 7 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 8 Si 0.97 46.92 29.54 68.60 2.03 48.95 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 12 C 0.15 5.84 4.67 38.74 0.18 6.02 16 13 C -0.11 -3.67 5.95 22.42 0.13 -3.53 16 14 Cl -0.06 -2.29 22.74 -2.72 -0.06 -2.35 16 15 C -0.06 -1.53 9.81 22.31 0.22 -1.31 16 16 C -0.12 -2.06 10.02 22.24 0.22 -1.84 16 17 C -0.04 -0.95 9.61 22.53 0.22 -0.73 16 18 C -0.13 -4.35 5.89 -19.99 -0.12 -4.46 16 19 C 0.52 17.93 8.26 70.20 0.58 18.51 16 20 O -0.51 -22.88 15.81 19.77 0.31 -22.57 16 21 O -0.51 -11.76 12.68 -56.75 -0.72 -12.48 16 22 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.06 2.86 6.76 -2.38 -0.02 2.85 16 24 H 0.04 1.70 5.15 -2.39 -0.01 1.68 16 25 H -0.02 -1.25 8.06 -2.39 -0.02 -1.26 16 26 H 0.02 1.37 4.93 -2.39 -0.01 1.36 16 27 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 28 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 29 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 30 H 0.18 2.64 7.61 -2.91 -0.02 2.62 16 31 H 0.43 6.34 9.11 -74.06 -0.67 5.67 16 Total: -1.00 -78.91 280.73 4.07 -74.84 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 0.51 Total: 0.87 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 3.63 Total: -3.31 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -1.63 Total: -83.95 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.41 Total: -35.04 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.06 Total: -2.35 kcal Total: -78.91 4.07 -74.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234262946.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.434 kcal (2) G-P(sol) polarization free energy of solvation -78.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds