Wall clock time and date at job start Mon Mar 30 2020 07:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48502 * 109.46883 * 270.00061 * 3 2 1 5 5 H 1.48507 * 109.47018 * 29.99389 * 3 2 1 6 6 H 1.48496 * 109.47426 * 149.99574 * 3 2 1 7 7 C 1.37882 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00258 * 180.02562 * 10 9 7 12 12 O 1.21507 * 120.00243 * 359.97438 * 11 10 9 13 13 O 1.34644 * 119.99827 * 179.97438 * 11 10 9 14 14 C 1.45196 * 116.99750 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47392 * 180.02562 * 14 13 11 16 16 C 1.38240 * 119.98559 * 269.73067 * 15 14 13 17 17 C 1.38216 * 120.01374 * 179.72287 * 16 15 14 18 18 C 1.38354 * 119.98253 * 0.54177 * 17 16 15 19 19 Cl 1.73596 * 120.01136 * 179.70552 * 18 17 16 20 20 C 1.38352 * 119.97483 * 359.73063 * 18 17 16 21 21 C 1.38214 * 119.98645 * 359.97438 * 20 18 17 22 22 H 0.97002 * 119.99804 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99956 * 9 7 2 24 24 H 1.09004 * 109.47103 * 299.99834 * 9 7 2 25 25 H 0.96999 * 119.99694 * 359.97438 * 10 9 7 26 26 H 1.08996 * 109.47465 * 300.00021 * 14 13 11 27 27 H 1.08999 * 109.47008 * 60.00031 * 14 13 11 28 28 H 1.08000 * 119.99308 * 359.97438 * 16 15 14 29 29 H 1.07997 * 120.00845 * 180.27355 * 17 16 15 30 30 H 1.07994 * 120.00719 * 179.97438 * 20 18 17 31 31 H 1.07995 * 119.99328 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7536 -4.8834 0.0015 12 8 0.5590 -5.1054 0.0006 13 8 2.6286 -5.9068 0.0021 14 6 2.0736 -7.2485 0.0023 15 6 3.1944 -8.2559 0.0036 16 6 3.7054 -8.7224 -1.1931 17 6 4.7373 -9.6420 -1.1926 18 6 5.2511 -10.1040 0.0060 19 17 6.5420 -11.2647 0.0075 20 6 4.7355 -9.6409 1.2034 21 6 3.7077 -8.7167 1.2016 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 3.1566 -3.4355 0.0021 26 1 1.4596 -7.3876 0.8920 27 1 1.4602 -7.3881 -0.8879 28 1 3.3010 -8.3653 -2.1287 29 1 5.1394 -10.0031 -2.1276 30 1 5.1359 -10.0014 2.1393 31 1 3.3049 -8.3555 2.1362 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258488780.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:49 Heat of formation + Delta-G solvation = -92.899181 kcal Electronic energy + Delta-G solvation = -16905.763236 eV Core-core repulsion = 13790.929548 eV Total energy + Delta-G solvation = -3114.833688 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.48865 -40.31709 -37.91858 -37.35624 -36.19750 -34.45075 -32.94151 -32.12424 -29.51741 -27.39691 -24.91365 -23.90129 -22.60786 -22.14162 -20.22955 -18.37904 -18.16834 -17.69588 -17.62906 -16.70594 -16.45829 -16.24621 -15.29607 -14.95418 -14.86858 -14.54421 -14.50038 -14.15137 -13.81093 -13.74859 -12.93731 -12.72081 -12.66391 -12.57235 -12.33003 -12.24019 -11.84595 -11.69306 -11.65617 -11.50062 -10.82816 -10.07525 -9.99247 -9.77003 -8.29940 -6.46257 -0.13514 0.26207 1.07886 1.34854 1.47617 1.47831 1.60024 1.80366 2.38811 2.59586 3.05702 3.37994 3.67732 3.78289 3.90295 4.06495 4.21130 4.39612 4.49870 4.63045 4.94052 4.95935 5.09432 5.16818 5.19986 5.25995 5.44143 5.45629 5.59722 5.70779 5.80827 6.61135 6.73226 7.22386 7.45106 8.82146 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.039526 B = 0.002876 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.218136 B = 9734.339389 C =10132.535157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.282 3.718 10 N -0.685 5.685 11 C 0.639 3.361 12 O -0.617 6.617 13 O -0.365 6.365 14 C 0.122 3.878 15 C -0.101 4.101 16 C -0.085 4.085 17 C -0.115 4.115 18 C -0.034 4.034 19 Cl -0.066 7.066 20 C -0.115 4.115 21 C -0.085 4.085 22 H 0.270 0.730 23 H -0.002 1.002 24 H -0.002 1.002 25 H 0.412 0.588 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.545 -20.391 0.015 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.596 4.596 8 H 0.102 0.898 9 C 0.161 3.839 10 N -0.342 5.342 11 C 0.392 3.608 12 O -0.510 6.510 13 O -0.279 6.279 14 C 0.048 3.952 15 C -0.102 4.102 16 C -0.103 4.103 17 C -0.134 4.134 18 C -0.060 4.060 19 Cl -0.037 7.037 20 C -0.134 4.134 21 C -0.103 4.103 22 H 0.079 0.921 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.248 0.752 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.165 0.835 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.930 -20.564 0.020 23.774 hybrid contribution 0.216 0.746 -0.012 0.777 sum 12.146 -19.818 0.008 23.244 Atomic orbital electron populations 1.70121 1.08137 1.28746 1.49628 1.26011 0.95797 1.03687 0.93728 0.85140 0.78460 0.76906 0.78620 1.19589 1.20847 1.18061 1.21563 0.94439 0.90194 1.53384 0.89770 1.18685 0.87826 0.82267 0.95088 1.45110 1.12134 1.01847 1.75152 1.18335 0.83356 0.82558 0.76567 1.90926 1.16674 1.85111 1.58295 1.86297 1.38888 1.15493 1.87248 1.21843 0.93910 0.75376 1.04116 1.19641 0.98328 0.97451 0.94733 1.21279 0.95121 0.95593 0.98324 1.21268 0.96695 0.97582 0.97840 1.21201 0.93466 0.95701 0.95663 1.98380 1.48653 1.57723 1.98968 1.21266 0.96743 0.97519 0.97860 1.21277 0.95155 0.95573 0.98314 0.92068 0.98420 0.98414 0.75189 0.89973 0.89961 0.83548 0.82809 0.82813 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.66 13.29 21.45 0.28 -54.37 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.99 41.60 29.54 68.60 2.03 43.63 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.56 -29.89 9.28 25.60 0.24 -29.65 16 8 H 0.08 4.11 7.60 -2.91 -0.02 4.08 16 9 C 0.28 15.25 5.43 85.63 0.46 15.71 16 10 N -0.68 -30.03 5.55 -594.61 -3.30 -33.33 16 11 C 0.64 27.10 8.75 129.79 1.14 28.23 16 12 O -0.62 -30.34 16.13 19.82 0.32 -30.02 16 13 O -0.36 -12.26 10.25 -55.54 -0.57 -12.83 16 14 C 0.12 3.21 5.60 71.24 0.40 3.61 16 15 C -0.10 -2.14 5.52 -19.86 -0.11 -2.25 16 16 C -0.08 -1.56 9.70 22.26 0.22 -1.34 16 17 C -0.12 -1.88 9.83 22.29 0.22 -1.66 16 18 C -0.03 -0.57 6.32 22.32 0.14 -0.43 16 19 Cl -0.07 -1.03 28.96 -2.72 -0.08 -1.11 16 20 C -0.12 -1.88 9.83 22.29 0.22 -1.66 16 21 C -0.08 -1.56 9.70 22.26 0.22 -1.34 16 22 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 23 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 24 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 25 H 0.41 15.54 8.43 -92.71 -0.78 14.76 16 26 H 0.08 2.12 8.08 -2.39 -0.02 2.10 16 27 H 0.08 2.12 8.08 -2.39 -0.02 2.10 16 28 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -66.38 299.46 2.66 -63.73 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.38 Total: 14.19 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 3.60 Total: 10.11 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -3.02 Total: -87.70 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -0.25 Total: -42.84 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -66.38 2.66 -63.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258488780.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.173 kcal (2) G-P(sol) polarization free energy of solvation -66.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds