Wall clock time and date at job start Mon Mar 30 2020 07:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99749 * 2 1 4 4 H 1.48500 * 109.47112 * 270.00269 * 3 2 1 5 5 H 1.48495 * 109.47002 * 30.00447 * 3 2 1 6 6 H 1.48504 * 109.46760 * 150.00487 * 3 2 1 7 7 C 1.37878 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99769 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.88610 * 300.70238 * 9 7 2 11 11 C 1.55156 * 111.00325 * 176.81941 * 9 7 2 12 12 C 1.54428 * 102.89529 * 206.40729 * 11 9 7 13 13 N 1.47023 * 107.28154 * 22.18672 * 12 11 9 14 14 C 1.34772 * 125.64732 * 181.09073 * 13 12 11 15 15 O 1.21713 * 119.99759 * 179.97438 * 14 13 12 16 16 C 1.46514 * 120.00243 * 359.96935 * 14 13 12 17 17 C 1.36618 * 125.97979 * 180.02562 * 16 14 13 18 18 C 1.40255 * 106.73840 * 179.97438 * 17 16 14 19 19 C 1.35365 * 107.11690 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 125.63269 * 180.02562 * 19 18 17 21 21 O 1.33951 * 108.73678 * 359.77380 * 19 18 17 22 22 C 1.47430 * 108.69895 * 1.06294 * 13 12 11 23 23 H 0.96992 * 120.00088 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.72614 * 324.75215 * 11 9 7 25 25 H 1.09002 * 110.71438 * 88.02312 * 11 9 7 26 26 H 1.08996 * 109.87511 * 262.77039 * 12 11 9 27 27 H 1.08994 * 110.00498 * 141.68055 * 12 11 9 28 28 H 1.08000 * 126.63179 * 359.95224 * 17 16 14 29 29 H 1.08000 * 126.44089 * 180.02562 * 18 17 16 30 30 H 1.09008 * 110.36125 * 217.02920 * 22 13 12 31 31 H 1.09000 * 110.45875 * 94.76152 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6068 -2.5759 0.8753 11 6 2.2255 -3.7039 -0.0815 12 6 1.3623 -4.8015 -0.7410 13 7 0.2745 -4.1264 -1.4637 14 6 -0.7075 -4.7381 -2.1549 15 8 -1.5601 -4.0756 -2.7166 16 6 -0.7487 -6.2008 -2.2304 17 6 -1.6832 -6.9442 -2.8940 18 6 -1.3388 -8.2903 -2.7026 19 6 -0.2210 -8.3109 -1.9393 20 17 0.6182 -9.7365 -1.4131 21 8 0.1338 -7.0494 -1.6618 22 6 0.4355 -2.6694 -1.3064 23 1 -0.4850 0.8400 0.0004 24 1 3.0859 -3.4628 -0.7058 25 1 2.5443 -4.0096 0.9150 26 1 0.9477 -5.4569 0.0249 27 1 1.9663 -5.3821 -1.4382 28 1 -2.5247 -6.5682 -3.4569 29 1 -1.8658 -9.1489 -3.0917 30 1 -0.5380 -2.1883 -1.2112 31 1 0.9824 -2.2530 -2.1524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259888607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:49 Heat of formation + Delta-G solvation = -20.800114 kcal Electronic energy + Delta-G solvation = -18067.387579 eV Core-core repulsion = 14955.680341 eV Total energy + Delta-G solvation = -3111.707238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.81817 -39.21276 -37.25353 -36.84324 -33.42012 -32.98670 -30.94442 -29.55010 -28.08713 -25.30167 -23.41228 -22.04317 -21.68999 -19.93470 -19.51761 -17.66199 -16.83264 -16.72796 -16.39486 -15.29396 -14.90640 -14.49186 -13.82311 -13.64649 -13.38992 -13.21408 -12.69510 -12.49362 -12.38871 -11.98498 -11.88059 -11.63545 -11.43315 -10.98905 -10.62767 -10.59651 -10.22668 -9.94112 -9.86973 -9.36582 -9.09744 -8.71373 -8.56916 -7.98530 -6.13891 -4.19641 0.91391 0.93263 2.10550 3.03377 3.26599 3.33997 3.35934 3.42707 3.61289 4.35721 4.64165 4.75717 5.19210 5.28255 5.42489 5.46579 5.60270 5.64885 5.87190 6.07680 6.17974 6.41489 6.54658 6.68685 6.79417 6.89190 6.90588 7.36166 7.62515 7.85163 8.01900 8.22235 8.43998 8.83717 9.46810 10.95679 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.038086 B = 0.004377 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.005840 B = 6396.262028 C = 7016.537625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.047 3.953 10 H 0.042 0.958 11 C -0.128 4.128 12 C 0.101 3.899 13 N -0.599 5.599 14 C 0.600 3.400 15 O -0.525 6.525 16 C -0.035 4.035 17 C -0.129 4.129 18 C -0.182 4.182 19 C 0.036 3.964 20 Cl 0.026 6.974 21 O -0.149 6.149 22 C 0.116 3.884 23 H 0.265 0.735 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.169 0.831 29 H 0.165 0.835 30 H 0.086 0.914 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.208 -17.104 -3.201 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.081 0.919 9 C 0.027 3.973 10 H 0.060 0.940 11 C -0.166 4.166 12 C -0.022 4.022 13 N -0.330 5.330 14 C 0.386 3.614 15 O -0.404 6.404 16 C -0.088 4.088 17 C -0.150 4.150 18 C -0.202 4.202 19 C -0.043 4.043 20 Cl 0.055 6.945 21 O -0.046 6.046 22 C -0.004 4.004 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.187 0.813 29 H 0.182 0.818 30 H 0.104 0.896 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.103 -16.659 -3.294 16.982 hybrid contribution 0.462 0.492 -0.011 0.675 sum 0.359 -16.167 -3.305 16.505 Atomic orbital electron populations 1.69936 1.05983 1.27163 1.49140 1.25052 0.94901 0.99447 0.94454 0.86527 0.79801 0.83091 0.78227 1.20534 1.21145 1.19788 1.20966 0.92961 0.89607 1.52220 0.91925 1.19865 0.92359 0.92184 0.92857 0.93990 1.22769 0.98561 0.95783 0.99472 1.22147 0.88746 0.95990 0.95327 1.48891 1.25042 1.10900 1.48166 1.16148 0.82209 0.82595 0.80443 1.90886 1.39039 1.62953 1.47530 1.22594 0.92716 0.90904 1.02557 1.21895 1.00561 0.91379 1.01130 1.21482 0.97070 0.98584 1.03110 1.22819 0.96429 0.81642 1.03387 1.98434 1.78349 1.27827 1.89884 1.84141 1.46416 1.14099 1.59919 1.22908 1.02735 0.74562 1.00162 0.92564 0.91302 0.91437 0.92110 0.92309 0.81346 0.81751 0.89554 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 12.29 55.43 0.68 -24.16 16 2 C 0.06 1.73 5.35 -17.82 -0.10 1.63 16 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.52 -13.50 8.52 -34.44 -0.29 -13.79 16 8 H 0.06 1.58 7.78 -52.49 -0.41 1.18 16 9 C 0.05 1.11 2.90 -89.62 -0.26 0.85 16 10 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 11 C -0.13 -2.43 6.40 -24.84 -0.16 -2.59 16 12 C 0.10 1.78 5.55 -3.01 -0.02 1.76 16 13 N -0.60 -12.35 3.33 -172.05 -0.57 -12.92 16 14 C 0.60 12.07 7.81 -12.93 -0.10 11.97 16 15 O -0.52 -12.01 17.12 5.18 0.09 -11.92 16 16 C -0.03 -0.57 6.94 -36.83 -0.26 -0.83 16 17 C -0.13 -1.74 10.62 -39.41 -0.42 -2.16 16 18 C -0.18 -2.03 10.84 -39.85 -0.43 -2.46 16 19 C 0.04 0.44 7.93 29.71 0.24 0.67 16 20 Cl 0.03 0.26 29.30 -51.86 -1.52 -1.26 16 21 O -0.15 -2.23 8.27 4.73 0.04 -2.19 16 22 C 0.12 2.77 5.77 -2.53 -0.01 2.75 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.06 1.00 7.68 -51.93 -0.40 0.61 16 27 H 0.06 0.94 7.77 -51.93 -0.40 0.54 16 28 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.09 2.31 7.47 -51.92 -0.39 1.92 16 31 H 0.06 1.47 8.03 -51.93 -0.42 1.05 16 LS Contribution 287.29 15.07 4.33 4.33 Total: -1.00 -28.80 287.29 -7.04 -35.84 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.26 Total: -1.10 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.81 Total: -2.18 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.11 Total: -37.07 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.13 Total: -14.11 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.80 -7.04 -35.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259888607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.043 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds