Wall clock time and date at job start Mon Mar 30 2020 07:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 N 1.46898 * 109.47058 * 60.00265 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38228 * 119.96008 * 264.72981 * 12 9 7 14 14 C 1.38205 * 120.12407 * 179.73829 * 13 12 9 15 15 C 1.38332 * 120.09737 * 0.60399 * 14 13 12 16 16 Cl 1.73607 * 119.97646 * 179.69932 * 15 14 13 17 17 C 1.38755 * 120.04414 * 359.72122 * 15 14 13 18 18 C 1.38699 * 119.95495 * 84.99571 * 12 9 7 19 19 O 1.36110 * 119.39694 * 359.63766 * 18 12 9 20 20 C 1.43170 * 116.72018 * 162.88133 * 19 18 12 21 21 C 1.53479 * 108.26151 * 46.19476 * 20 19 18 22 22 O 1.36132 * 119.39474 * 179.71242 * 17 15 14 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.00892 * 111.00332 * 60.00049 * 11 9 7 25 25 H 1.00905 * 110.99665 * 183.95824 * 11 9 7 26 26 H 1.07999 * 119.93172 * 359.97438 * 13 12 9 27 27 H 1.08004 * 119.95132 * 180.33979 * 14 13 12 28 28 H 1.09005 * 109.70842 * 286.50678 * 20 19 18 29 29 H 1.09001 * 109.74273 * 165.90617 * 20 19 18 30 30 H 1.08992 * 109.71050 * 180.61257 * 21 20 19 31 31 H 1.09000 * 109.74145 * 59.99882 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4071 -2.5772 -1.1992 12 6 2.2304 -3.6445 0.0005 13 6 2.5954 -4.2407 -1.1920 14 6 3.4974 -5.2878 -1.1964 15 6 4.0285 -5.7510 -0.0060 16 17 5.1553 -7.0717 -0.0146 17 6 3.6608 -5.1611 1.1948 18 6 2.7602 -4.1028 1.1977 19 8 2.3926 -3.5042 2.3635 20 6 2.6542 -4.2295 3.5699 21 6 4.0872 -4.7748 3.5021 22 8 4.1870 -5.6313 2.3590 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9653 -2.5260 -2.0381 25 1 -0.1569 -3.4139 -1.1907 26 1 2.1778 -3.8850 -2.1223 27 1 3.7848 -5.7480 -2.1303 28 1 1.9502 -5.0566 3.6615 29 1 2.5541 -3.5649 4.4281 30 1 4.3081 -5.3416 4.4065 31 1 4.7914 -3.9485 3.4049 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260050929.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:33 Heat of formation + Delta-G solvation = -51.315702 kcal Electronic energy + Delta-G solvation = -18704.480692 eV Core-core repulsion = 15591.450199 eV Total energy + Delta-G solvation = -3113.030493 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00926 -37.93606 -37.14620 -36.11522 -34.56038 -31.48023 -31.04850 -29.19140 -28.18698 -25.66863 -24.54659 -22.98910 -21.05513 -20.31137 -18.35837 -17.16865 -17.09570 -16.69931 -15.28126 -14.98812 -14.82621 -14.52051 -14.21098 -13.93323 -13.84735 -13.55881 -13.21450 -12.64866 -12.33090 -11.85884 -11.51739 -11.41565 -10.85370 -10.79126 -10.68540 -10.62805 -10.43885 -10.13443 -10.01362 -8.83913 -8.31891 -7.90299 -7.72356 -7.56462 -6.16349 -3.98340 1.49003 1.56465 2.34270 3.19929 3.48054 3.49820 3.51584 3.67398 3.94218 4.38971 4.62201 4.89984 4.94998 4.97853 5.21935 5.31270 5.45911 5.54336 5.60179 5.64881 5.94593 6.07135 6.27461 6.40072 6.63716 6.88543 7.08054 7.23541 7.67568 7.98780 8.27405 8.64392 8.72937 9.06394 9.83693 11.23753 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.022539 B = 0.006598 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.002315 B = 4242.587693 C = 4780.077992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.039 3.961 3 Si 1.066 2.934 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.599 4.599 8 H 0.045 0.955 9 C 0.245 3.755 10 H 0.048 0.952 11 N -0.830 5.830 12 C -0.054 4.054 13 C -0.119 4.119 14 C -0.107 4.107 15 C -0.053 4.053 16 Cl -0.072 7.072 17 C 0.052 3.948 18 C 0.064 3.936 19 O -0.277 6.277 20 C 0.016 3.984 21 C 0.021 3.979 22 O -0.302 6.302 23 H 0.290 0.710 24 H 0.327 0.673 25 H 0.303 0.697 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 -11.615 3.615 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.170 4.170 3 Si 0.895 3.105 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.638 4.638 8 H 0.063 0.937 9 C 0.136 3.864 10 H 0.066 0.934 11 N -0.358 5.358 12 C -0.057 4.057 13 C -0.138 4.138 14 C -0.126 4.126 15 C -0.080 4.080 16 Cl -0.043 7.043 17 C 0.006 3.994 18 C 0.017 3.983 19 O -0.190 6.190 20 C -0.060 4.060 21 C -0.055 4.055 22 O -0.216 6.216 23 H 0.102 0.898 24 H 0.141 0.859 25 H 0.114 0.886 26 H 0.153 0.847 27 H 0.152 0.848 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.360 -9.399 3.945 12.015 hybrid contribution 1.070 -2.723 0.064 2.926 sum 7.430 -12.122 4.009 14.772 Atomic orbital electron populations 1.70522 1.06791 1.32751 1.42521 1.25582 0.96594 1.01671 0.93177 0.83616 0.74718 0.75594 0.76551 1.21701 1.21735 1.21095 1.21577 0.93235 0.90061 1.58924 0.93713 1.18264 0.87925 0.89858 0.90327 0.93437 1.59448 1.28546 1.42446 1.05356 1.21129 0.98030 0.97390 0.89170 1.20731 0.98875 0.96195 0.98000 1.20729 0.98213 0.97932 0.95718 1.19880 1.00054 0.96122 0.91970 1.98317 1.60558 1.46585 1.98881 1.18480 0.97014 0.97805 0.86052 1.18602 0.96778 0.95135 0.87756 1.86596 1.78571 1.42422 1.11445 1.23607 0.96014 0.98226 0.88170 1.23627 0.97678 0.95695 0.88507 1.86322 1.76432 1.42954 1.15920 0.89780 0.85947 0.88588 0.84728 0.84847 0.90998 0.86230 0.86401 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.51 55.43 0.75 -25.93 16 2 C 0.04 1.12 5.39 -17.82 -0.10 1.02 16 3 Si 1.07 25.36 29.90 -169.99 -5.08 20.27 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.60 -16.58 8.71 -34.44 -0.30 -16.88 16 8 H 0.04 1.28 7.74 -52.49 -0.41 0.87 16 9 C 0.25 5.97 2.17 -70.02 -0.15 5.82 16 10 H 0.05 1.29 7.53 -51.93 -0.39 0.90 16 11 N -0.83 -18.37 7.38 -6.65 -0.05 -18.42 16 12 C -0.05 -1.14 5.00 -104.45 -0.52 -1.66 16 13 C -0.12 -2.15 9.26 -39.60 -0.37 -2.52 16 14 C -0.11 -1.73 9.82 -39.56 -0.39 -2.12 16 15 C -0.05 -0.91 6.33 -39.36 -0.25 -1.16 16 16 Cl -0.07 -1.08 28.46 -51.86 -1.48 -2.55 16 17 C 0.05 0.96 6.49 -39.12 -0.25 0.70 16 18 C 0.06 1.29 6.47 -39.14 -0.25 1.03 16 19 O -0.28 -5.50 9.50 -32.88 -0.31 -5.82 16 20 C 0.02 0.22 7.26 37.41 0.27 0.49 16 21 C 0.02 0.26 7.26 37.41 0.27 0.53 16 22 O -0.30 -4.90 9.84 -32.95 -0.32 -5.23 16 23 H 0.29 8.65 6.39 -40.82 -0.26 8.39 16 24 H 0.33 6.85 7.20 -39.30 -0.28 6.56 16 25 H 0.30 5.87 9.06 -39.29 -0.36 5.52 16 26 H 0.14 2.22 6.27 -52.49 -0.33 1.89 16 27 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 278.89 15.07 4.20 4.20 Total: -1.00 -31.84 278.89 -7.27 -39.11 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -2.94 Total: 9.10 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.04 Total: -14.75 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.70 Total: -44.35 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.64 Total: -11.04 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.27 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.48 Total: -2.55 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.84 -7.27 -39.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260050929.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.207 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds