Wall clock time and date at job start Mon Mar 30 2020 07:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 N 1.46898 * 109.47058 * 60.00265 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38228 * 119.96008 * 264.72981 * 12 9 7 14 14 C 1.38205 * 120.12407 * 179.73829 * 13 12 9 15 15 C 1.38332 * 120.09737 * 0.60399 * 14 13 12 16 16 Cl 1.73607 * 119.97646 * 179.69932 * 15 14 13 17 17 C 1.38755 * 120.04414 * 359.72122 * 15 14 13 18 18 C 1.38699 * 119.95495 * 84.99571 * 12 9 7 19 19 O 1.36110 * 119.39694 * 359.63766 * 18 12 9 20 20 C 1.43170 * 116.72018 * 162.88133 * 19 18 12 21 21 C 1.53479 * 108.26151 * 46.19476 * 20 19 18 22 22 O 1.36132 * 119.39474 * 179.71242 * 17 15 14 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.00892 * 111.00332 * 60.00049 * 11 9 7 25 25 H 1.00905 * 110.99665 * 183.95824 * 11 9 7 26 26 H 1.07999 * 119.93172 * 359.97438 * 13 12 9 27 27 H 1.08004 * 119.95132 * 180.33979 * 14 13 12 28 28 H 1.09005 * 109.70842 * 286.50678 * 20 19 18 29 29 H 1.09001 * 109.74273 * 165.90617 * 20 19 18 30 30 H 1.08992 * 109.71050 * 180.61257 * 21 20 19 31 31 H 1.09000 * 109.74145 * 59.99882 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4071 -2.5772 -1.1992 12 6 2.2304 -3.6445 0.0005 13 6 2.5954 -4.2407 -1.1920 14 6 3.4974 -5.2878 -1.1964 15 6 4.0285 -5.7510 -0.0060 16 17 5.1553 -7.0717 -0.0146 17 6 3.6608 -5.1611 1.1948 18 6 2.7602 -4.1028 1.1977 19 8 2.3926 -3.5042 2.3635 20 6 2.6542 -4.2295 3.5699 21 6 4.0872 -4.7748 3.5021 22 8 4.1870 -5.6313 2.3590 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9653 -2.5260 -2.0381 25 1 -0.1569 -3.4139 -1.1907 26 1 2.1778 -3.8850 -2.1223 27 1 3.7848 -5.7480 -2.1303 28 1 1.9502 -5.0566 3.6615 29 1 2.5541 -3.5649 4.4281 30 1 4.3081 -5.3416 4.4065 31 1 4.7914 -3.9485 3.4049 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260050929.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:33 Heat of formation + Delta-G solvation = -73.394765 kcal Electronic energy + Delta-G solvation = -18705.438112 eV Core-core repulsion = 15591.450199 eV Total energy + Delta-G solvation = -3113.987913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.32313 -39.33383 -38.47978 -37.42922 -36.30566 -33.44172 -32.27220 -30.72422 -29.47356 -27.62662 -25.77316 -24.77945 -22.45558 -21.80173 -19.72370 -18.87381 -18.44701 -18.26379 -16.64353 -16.48345 -16.31382 -15.83252 -15.79307 -15.48200 -15.24680 -15.18952 -14.47198 -14.28825 -13.94794 -13.33920 -13.05897 -12.83716 -12.58806 -12.29823 -12.10273 -11.96362 -11.89859 -11.84184 -11.51581 -10.78250 -10.45931 -9.44595 -9.24820 -9.17917 -8.35775 -6.20754 0.06301 0.19150 1.03748 1.55274 1.63611 1.81211 1.99880 2.27421 2.50306 2.66997 3.26603 3.34397 3.65972 3.82299 3.88654 4.09331 4.15952 4.18318 4.25798 4.46880 4.53496 4.62941 4.87448 4.90374 5.10480 5.43983 5.50667 5.82904 5.95504 6.23437 6.35007 6.68618 6.80127 7.05626 7.68372 9.00492 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.022539 B = 0.006598 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.002315 B = 4242.587693 C = 4780.077992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 1.109 2.891 4 H -0.279 1.279 5 H -0.278 1.278 6 H -0.283 1.283 7 C -0.604 4.604 8 H 0.029 0.971 9 C 0.256 3.744 10 H 0.008 0.992 11 N -0.835 5.835 12 C -0.088 4.088 13 C -0.118 4.118 14 C -0.096 4.096 15 C -0.057 4.057 16 Cl -0.049 7.049 17 C 0.050 3.950 18 C 0.047 3.953 19 O -0.315 6.315 20 C 0.007 3.993 21 C 0.019 3.981 22 O -0.307 6.307 23 H 0.278 0.722 24 H 0.334 0.666 25 H 0.320 0.680 26 H 0.147 0.853 27 H 0.169 0.831 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.164 0.836 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.470 -12.767 3.629 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.212 4.212 3 Si 0.933 3.067 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.209 1.209 7 C -0.643 4.643 8 H 0.047 0.953 9 C 0.146 3.854 10 H 0.026 0.974 11 N -0.365 5.365 12 C -0.091 4.091 13 C -0.137 4.137 14 C -0.115 4.115 15 C -0.084 4.084 16 Cl -0.020 7.020 17 C 0.003 3.997 18 C 0.001 3.999 19 O -0.230 6.230 20 C -0.068 4.068 21 C -0.055 4.055 22 O -0.222 6.222 23 H 0.090 0.910 24 H 0.149 0.851 25 H 0.132 0.868 26 H 0.164 0.836 27 H 0.186 0.814 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.181 0.819 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.018 -10.579 3.970 13.855 hybrid contribution 0.619 -2.515 0.147 2.594 sum 8.637 -13.094 4.118 16.218 Atomic orbital electron populations 1.70637 1.07617 1.32088 1.45118 1.26872 0.96704 1.05136 0.92470 0.83043 0.74148 0.72283 0.77241 1.20530 1.20330 1.20859 1.21827 0.92641 0.91964 1.57873 0.95266 1.17761 0.87999 0.90186 0.89429 0.97387 1.59168 1.28707 1.43723 1.04917 1.20918 0.99192 0.97883 0.91105 1.20873 0.99083 0.96418 0.97317 1.21041 0.96742 0.96807 0.96908 1.20142 0.99980 0.96377 0.91921 1.98325 1.59595 1.45281 1.98839 1.18553 0.96628 0.97158 0.87323 1.18739 0.97512 0.95909 0.87749 1.86520 1.79182 1.44341 1.12938 1.23998 0.97089 0.98942 0.86783 1.23950 0.96654 0.96114 0.88799 1.86309 1.76038 1.43707 1.16101 0.91030 0.85124 0.86792 0.83558 0.81395 0.90148 0.83654 0.81851 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.25 13.51 21.45 0.29 -55.96 16 2 C -0.01 -0.47 5.39 84.65 0.46 -0.02 16 3 Si 1.11 51.36 29.90 68.60 2.05 53.42 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.60 -34.26 8.71 25.60 0.22 -34.04 16 8 H 0.03 1.70 7.74 -2.91 -0.02 1.68 16 9 C 0.26 12.87 2.17 43.42 0.09 12.97 16 10 H 0.01 0.48 7.53 -2.39 -0.02 0.46 16 11 N -0.84 -37.71 7.38 -174.96 -1.29 -39.00 16 12 C -0.09 -3.76 5.00 -19.76 -0.10 -3.86 16 13 C -0.12 -4.16 9.26 22.26 0.21 -3.96 16 14 C -0.10 -2.90 9.82 22.28 0.22 -2.68 16 15 C -0.06 -1.83 6.33 22.42 0.14 -1.68 16 16 Cl -0.05 -1.33 28.46 -2.72 -0.08 -1.41 16 17 C 0.05 1.76 6.49 22.57 0.15 1.91 16 18 C 0.05 1.92 6.47 22.55 0.15 2.07 16 19 O -0.32 -12.81 9.50 -82.57 -0.78 -13.60 16 20 C 0.01 0.18 7.26 72.14 0.52 0.70 16 21 C 0.02 0.45 7.26 72.14 0.52 0.97 16 22 O -0.31 -9.38 9.84 -82.83 -0.81 -10.20 16 23 H 0.28 17.21 6.39 -92.70 -0.59 16.62 16 24 H 0.33 14.08 7.20 -89.70 -0.65 13.43 16 25 H 0.32 12.59 9.06 -89.69 -0.81 11.78 16 26 H 0.15 4.66 6.27 -2.91 -0.02 4.64 16 27 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 28 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.15 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.16 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -70.24 278.89 1.86 -68.37 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.09 Total: 26.00 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 2.58 Total: -27.62 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -1.00 Total: -94.96 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -1.60 Total: -23.79 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.42 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -70.24 1.86 -68.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260050929.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.023 kcal (2) G-P(sol) polarization free energy of solvation -70.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds