Wall clock time and date at job start Mon Mar 30 2020 06:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46658 * 2 1 4 4 C 1.50691 * 109.47327 * 119.99317 * 2 1 3 5 5 H 1.08008 * 120.00001 * 120.00108 * 4 2 1 6 6 C 1.37876 * 120.00303 * 300.00508 * 4 2 1 7 7 N 1.31509 * 120.00071 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99917 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47152 * 60.00453 * 8 6 4 10 10 H 1.48504 * 109.46735 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47590 * 300.00017 * 8 6 4 12 12 C 1.50698 * 109.47326 * 240.00124 * 2 1 3 13 13 C 1.38123 * 119.96577 * 299.99701 * 12 2 1 14 14 C 1.38879 * 119.93641 * 180.02562 * 13 12 2 15 15 N 1.39724 * 120.06573 * 179.97438 * 14 13 12 16 16 C 1.38921 * 119.87286 * 0.25363 * 14 13 12 17 17 C 1.38091 * 119.92895 * 359.48942 * 16 14 13 18 18 C 1.38343 * 119.96974 * 120.01983 * 12 2 1 19 19 Br 1.89097 * 119.93428 * 359.95470 * 18 12 2 20 20 H 1.08996 * 109.46660 * 60.00717 * 1 2 3 21 21 H 1.09006 * 109.46658 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47097 * 300.00397 * 1 2 3 23 23 H 0.96998 * 120.00416 * 180.02562 * 7 6 4 24 24 H 1.07999 * 120.03109 * 359.97438 * 13 12 2 25 25 H 0.97001 * 120.00243 * 0.02562 * 15 14 13 26 26 H 0.97005 * 120.00030 * 179.72374 * 15 14 13 27 27 H 1.07995 * 120.03818 * 179.74489 * 16 14 13 28 28 H 1.08004 * 119.96716 * 180.25685 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.6534 -1.5884 1.1314 6 6 1.6993 -0.2391 2.4827 7 7 0.9427 0.8298 2.6033 8 14 2.3215 -1.1201 4.0080 9 1 3.8065 -1.1204 4.0082 10 1 1.8270 -0.4195 5.2204 11 1 1.8262 -2.5199 4.0079 12 6 2.0324 -0.7104 -1.2304 13 6 1.6984 -2.0328 -1.4483 14 6 2.1621 -2.6870 -2.5822 15 7 1.8263 -4.0248 -2.8050 16 6 2.9654 -2.0104 -3.4916 17 6 3.2916 -0.6868 -3.2711 18 6 2.8281 -0.0375 -2.1404 19 35 3.2826 1.7731 -1.8388 20 1 -0.3632 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.7087 1.1614 3.4843 24 1 1.0779 -2.5577 -0.7372 25 1 1.2685 -4.4975 -2.1676 26 1 2.1475 -4.4797 -3.5994 27 1 3.3309 -2.5177 -4.3721 28 1 3.9127 -0.1590 -3.9798 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260519738.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:52 Heat of formation + Delta-G solvation = 14.823283 kcal Electronic energy + Delta-G solvation = -13148.900914 eV Core-core repulsion = 10824.310737 eV Total energy + Delta-G solvation = -2324.590177 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 269.011 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.97658 -35.09741 -33.59124 -31.34921 -30.42601 -28.41938 -26.97040 -25.07675 -22.91308 -21.24759 -19.63845 -16.71629 -16.40183 -15.79580 -15.06786 -14.51127 -13.99495 -13.20527 -13.05453 -12.77580 -12.30162 -11.52678 -11.22957 -11.05959 -10.93744 -10.84971 -10.72961 -10.27100 -10.12672 -9.62552 -9.32503 -9.22910 -8.77019 -8.22737 -7.97489 -7.03993 -5.95528 -4.01340 1.95753 2.08280 2.55959 3.33915 3.38546 3.41542 4.15781 4.35234 4.50405 5.34832 5.37853 5.48625 5.94060 6.04836 6.24500 6.57106 6.73140 6.78744 6.90293 6.99344 7.19219 7.25601 7.42608 7.76731 7.81705 8.01535 8.05111 8.13582 8.43216 8.99716 9.61585 11.10303 Molecular weight = 269.01amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.009893 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.307841 B = 2829.590846 C = 3930.622939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 H 0.060 0.940 4 C -0.503 4.503 5 H 0.055 0.945 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.891 3.109 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.278 1.278 12 C 0.041 3.959 13 C -0.183 4.183 14 C 0.219 3.781 15 N -0.882 5.882 16 C -0.221 4.221 17 C -0.050 4.050 18 C -0.152 4.152 19 Br -0.068 7.068 20 H 0.008 0.992 21 H 0.026 0.974 22 H 0.087 0.913 23 H 0.261 0.739 24 H 0.127 0.873 25 H 0.397 0.603 26 H 0.392 0.608 27 H 0.115 0.885 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -3.394 -11.130 11.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.036 3.964 3 H 0.078 0.922 4 C -0.542 4.542 5 H 0.073 0.927 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.719 3.281 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.204 1.204 12 C 0.038 3.962 13 C -0.206 4.206 14 C 0.115 3.885 15 N -0.421 5.421 16 C -0.244 4.244 17 C -0.071 4.071 18 C -0.232 4.232 19 Br 0.017 6.983 20 H 0.028 0.972 21 H 0.045 0.955 22 H 0.105 0.895 23 H 0.071 0.929 24 H 0.145 0.855 25 H 0.225 0.775 26 H 0.220 0.780 27 H 0.133 0.867 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.761 -2.545 -10.862 11.493 hybrid contribution 0.180 -1.343 0.721 1.535 sum 2.941 -3.888 -10.141 11.251 Atomic orbital electron populations 1.21758 0.97463 0.99096 1.00383 1.18259 0.93072 0.97084 0.87954 0.92168 1.20987 1.31214 1.12230 0.89726 0.92668 1.24909 0.95109 0.94997 0.98735 1.69873 1.36580 1.22773 1.23403 0.86678 0.79305 0.79679 0.82464 1.20273 1.21298 1.20395 1.20368 0.89026 0.92674 0.94104 1.20485 1.07108 0.95213 0.97792 1.17921 0.92546 0.84475 0.93550 1.42436 1.60503 1.10289 1.28847 1.20267 1.07153 0.95296 1.01675 1.20655 0.97404 0.93764 0.95233 1.21490 1.09462 0.91758 1.00519 1.96488 1.92569 1.12340 1.96905 0.97243 0.95510 0.89477 0.92945 0.85491 0.77549 0.78041 0.86668 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.78 37.16 0.33 -2.82 15 2 C 0.05 1.38 2.35 -92.93 -0.22 1.16 15 3 H 0.06 1.61 5.82 -51.93 -0.30 1.31 15 4 C -0.50 -13.73 8.24 -34.44 -0.28 -14.01 15 5 H 0.06 1.51 7.60 -52.48 -0.40 1.11 15 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -25.20 11.32 55.43 0.63 -24.57 15 8 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 15 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 12 C 0.04 0.90 4.74 -104.63 -0.50 0.40 15 13 C -0.18 -3.61 8.55 -39.39 -0.34 -3.95 15 14 C 0.22 3.60 6.75 -83.77 -0.57 3.03 15 15 N -0.88 -10.74 9.09 32.42 0.29 -10.45 15 16 C -0.22 -3.45 9.90 -39.38 -0.39 -3.84 15 17 C -0.05 -0.85 9.78 -39.58 -0.39 -1.24 15 18 C -0.15 -3.05 6.22 -39.49 -0.25 -3.29 15 19 Br -0.07 -1.32 31.48 -68.01 -2.14 -3.46 15 20 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 15 21 H 0.03 0.61 7.39 -51.93 -0.38 0.23 15 22 H 0.09 2.31 6.07 -51.93 -0.32 2.00 15 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 24 H 0.13 2.53 7.57 -52.49 -0.40 2.14 15 25 H 0.40 4.35 8.84 -40.82 -0.36 3.99 15 26 H 0.39 3.72 8.84 -40.82 -0.36 3.35 15 27 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 28 H 0.12 1.73 8.06 -52.48 -0.42 1.31 15 LS Contribution 258.08 15.07 3.89 3.89 Total: -1.00 -29.04 258.08 -7.96 -37.00 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -2.92 Total: 4.18 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -2.69 Total: -22.90 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.92 Total: -35.02 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 35 Polarization: -1.32 SS G_CDS: -2.14 Total: -3.46 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.04 -7.96 -37.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260519738.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.827 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds