Wall clock time and date at job start Mon Mar 30 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46658 * 2 1 4 4 C 1.50691 * 109.47327 * 119.99317 * 2 1 3 5 5 H 1.08008 * 120.00001 * 120.00108 * 4 2 1 6 6 C 1.37876 * 120.00303 * 300.00508 * 4 2 1 7 7 N 1.31509 * 120.00071 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99917 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47152 * 60.00453 * 8 6 4 10 10 H 1.48504 * 109.46735 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47590 * 300.00017 * 8 6 4 12 12 C 1.50698 * 109.47326 * 240.00124 * 2 1 3 13 13 C 1.38123 * 119.96577 * 299.99701 * 12 2 1 14 14 C 1.38879 * 119.93641 * 180.02562 * 13 12 2 15 15 N 1.39724 * 120.06573 * 179.97438 * 14 13 12 16 16 C 1.38921 * 119.87286 * 0.25363 * 14 13 12 17 17 C 1.38091 * 119.92895 * 359.48942 * 16 14 13 18 18 C 1.38343 * 119.96974 * 120.01983 * 12 2 1 19 19 Br 1.89097 * 119.93428 * 359.95470 * 18 12 2 20 20 H 1.08996 * 109.46660 * 60.00717 * 1 2 3 21 21 H 1.09006 * 109.46658 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47097 * 300.00397 * 1 2 3 23 23 H 0.96998 * 120.00416 * 180.02562 * 7 6 4 24 24 H 1.07999 * 120.03109 * 359.97438 * 13 12 2 25 25 H 0.97001 * 120.00243 * 0.02562 * 15 14 13 26 26 H 0.97005 * 120.00030 * 179.72374 * 15 14 13 27 27 H 1.07995 * 120.03818 * 179.74489 * 16 14 13 28 28 H 1.08004 * 119.96716 * 180.25685 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.6534 -1.5884 1.1314 6 6 1.6993 -0.2391 2.4827 7 7 0.9427 0.8298 2.6033 8 14 2.3215 -1.1201 4.0080 9 1 3.8065 -1.1204 4.0082 10 1 1.8270 -0.4195 5.2204 11 1 1.8262 -2.5199 4.0079 12 6 2.0324 -0.7104 -1.2304 13 6 1.6984 -2.0328 -1.4483 14 6 2.1621 -2.6870 -2.5822 15 7 1.8263 -4.0248 -2.8050 16 6 2.9654 -2.0104 -3.4916 17 6 3.2916 -0.6868 -3.2711 18 6 2.8281 -0.0375 -2.1404 19 35 3.2826 1.7731 -1.8388 20 1 -0.3632 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.7087 1.1614 3.4843 24 1 1.0779 -2.5577 -0.7372 25 1 1.2685 -4.4975 -2.1676 26 1 2.1475 -4.4797 -3.5994 27 1 3.3309 -2.5177 -4.3721 28 1 3.9127 -0.1590 -3.9798 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260519738.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:51 Heat of formation + Delta-G solvation = -2.538655 kcal Electronic energy + Delta-G solvation = -13149.653784 eV Core-core repulsion = 10824.310737 eV Total energy + Delta-G solvation = -2325.343047 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 269.011 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.38123 -36.70643 -35.12688 -33.17438 -31.81891 -30.05616 -28.34561 -27.15916 -24.50287 -22.68754 -21.28426 -18.38608 -17.79460 -17.35996 -16.53000 -16.31225 -15.44665 -14.83021 -14.47282 -14.33681 -14.02635 -13.39026 -12.89388 -12.78567 -12.71093 -12.45175 -12.31282 -12.18493 -11.93083 -11.42058 -11.06320 -10.69237 -10.58579 -10.18512 -9.49589 -8.30789 -8.03676 -6.16056 0.57816 0.65957 1.10631 1.42814 1.44245 1.51526 2.45987 2.97867 3.08061 3.24349 4.07551 4.17442 4.52474 4.68482 4.83017 4.95583 5.00853 5.26772 5.33514 5.41925 5.42864 5.56141 5.67007 5.93785 6.10819 6.14602 6.41192 6.63234 6.91138 7.09129 7.49561 9.00654 Molecular weight = 269.01amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.009893 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.307841 B = 2829.590846 C = 3930.622939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.054 3.946 3 H 0.038 0.962 4 C -0.514 4.514 5 H 0.047 0.953 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.949 3.051 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.012 3.988 13 C -0.203 4.203 14 C 0.230 3.770 15 N -0.862 5.862 16 C -0.210 4.210 17 C -0.044 4.044 18 C -0.176 4.176 19 Br -0.075 7.075 20 H 0.019 0.981 21 H 0.029 0.971 22 H 0.060 0.940 23 H 0.260 0.740 24 H 0.115 0.885 25 H 0.404 0.596 26 H 0.410 0.590 27 H 0.157 0.843 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.497 -5.261 -12.677 14.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.036 3.964 3 H 0.056 0.944 4 C -0.552 4.552 5 H 0.066 0.934 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.009 3.991 13 C -0.227 4.227 14 C 0.123 3.877 15 N -0.402 5.402 16 C -0.233 4.233 17 C -0.064 4.064 18 C -0.257 4.257 19 Br 0.009 6.991 20 H 0.038 0.962 21 H 0.049 0.951 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.133 0.867 25 H 0.233 0.767 26 H 0.241 0.759 27 H 0.175 0.825 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.593 -4.460 -12.430 13.686 hybrid contribution -0.079 -0.844 1.099 1.388 sum 3.514 -5.304 -11.332 12.996 Atomic orbital electron populations 1.21594 0.97604 0.98959 0.99474 1.18087 0.93057 0.96107 0.89188 0.94424 1.21252 1.30903 1.12030 0.91053 0.93436 1.25632 0.95391 0.95711 1.01462 1.70003 1.37585 1.23970 1.23852 0.85751 0.78642 0.78925 0.79174 1.20140 1.20931 1.19531 1.20113 0.91287 0.93824 0.93870 1.20401 1.08236 0.94759 0.99308 1.17929 0.91582 0.85872 0.92294 1.42393 1.59569 1.08687 1.29562 1.20711 1.05604 0.94711 1.02304 1.20991 0.96741 0.94413 0.94303 1.21613 1.10563 0.91778 1.01723 1.96453 1.92543 1.12984 1.97077 0.96200 0.95140 0.92113 0.93046 0.86743 0.76675 0.75912 0.82544 0.83559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.78 71.98 0.63 -5.30 15 2 C 0.05 2.79 2.35 -12.29 -0.03 2.76 15 3 H 0.04 2.09 5.82 -2.38 -0.01 2.07 15 4 C -0.51 -28.61 8.24 25.60 0.21 -28.39 15 5 H 0.05 2.64 7.60 -2.91 -0.02 2.62 15 6 C 0.02 0.93 5.30 84.66 0.45 1.38 15 7 N -0.91 -53.19 11.32 21.45 0.24 -52.94 15 8 Si 0.95 44.10 29.54 68.60 2.03 46.13 15 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 15 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 12 C 0.01 0.51 4.74 -19.87 -0.09 0.41 15 13 C -0.20 -7.87 8.55 22.40 0.19 -7.68 15 14 C 0.23 6.87 6.75 38.20 0.26 7.13 15 15 N -0.86 -17.79 9.09 -51.35 -0.47 -18.26 15 16 C -0.21 -5.70 9.90 22.40 0.22 -5.48 15 17 C -0.04 -1.37 9.78 22.27 0.22 -1.16 15 18 C -0.18 -6.93 6.22 22.33 0.14 -6.79 15 19 Br -0.08 -2.92 31.48 -20.37 -0.64 -3.56 15 20 H 0.02 0.89 8.14 -2.39 -0.02 0.87 15 21 H 0.03 1.43 7.39 -2.38 -0.02 1.41 15 22 H 0.06 3.34 6.07 -2.39 -0.01 3.32 15 23 H 0.26 14.46 8.31 -92.71 -0.77 13.69 15 24 H 0.11 4.59 7.57 -2.91 -0.02 4.56 15 25 H 0.40 7.61 8.84 -92.71 -0.82 6.79 15 26 H 0.41 5.83 8.84 -92.70 -0.82 5.01 15 27 H 0.16 2.97 8.06 -2.91 -0.02 2.95 15 28 H 0.15 3.71 8.06 -2.91 -0.02 3.68 15 Total: -1.00 -63.26 258.08 2.91 -60.34 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -0.45 Total: 11.42 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 2.20 Total: -43.12 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -0.22 Total: -71.21 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 35 Polarization: -2.92 SS G_CDS: -0.64 Total: -3.56 kcal Total: -63.26 2.91 -60.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260519738.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.806 kcal (2) G-P(sol) polarization free energy of solvation -63.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds