Wall clock time and date at job start Mon Mar 30 2020 07:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99887 * 2 1 4 4 H 1.48499 * 109.47256 * 270.00242 * 3 2 1 5 5 H 1.48497 * 109.47533 * 30.00265 * 3 2 1 6 6 H 1.48503 * 109.47054 * 150.00421 * 3 2 1 7 7 C 1.37877 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00106 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99605 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46750 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47187 * 304.99892 * 10 9 7 12 12 N 1.46897 * 109.47456 * 65.00055 * 10 9 7 13 13 C 1.50702 * 109.46907 * 185.00420 * 10 9 7 14 14 C 1.38261 * 119.93202 * 265.02179 * 13 10 9 15 15 C 1.38223 * 120.14839 * 180.02562 * 14 13 10 16 16 C 1.38589 * 120.05360 * 359.97438 * 15 14 13 17 17 C 1.39215 * 119.83228 * 359.70655 * 16 15 14 18 18 C 1.38332 * 119.93762 * 85.00209 * 13 10 9 19 19 Cl 1.73599 * 119.99355 * 359.97438 * 18 13 10 20 20 O 1.36530 * 108.64468 * 179.80256 * 17 16 15 21 21 C 1.43998 * 105.55209 * 343.15164 * 20 17 16 22 22 O 1.36498 * 131.51699 * 180.02562 * 16 15 14 23 23 H 0.97004 * 120.00117 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46841 * 60.00310 * 9 7 2 25 25 H 1.08992 * 109.47135 * 299.99885 * 9 7 2 26 26 H 1.00897 * 111.00225 * 296.04909 * 12 10 9 27 27 H 1.00906 * 110.99336 * 59.99943 * 12 10 9 28 28 H 1.07995 * 119.92809 * 0.02562 * 14 13 10 29 29 H 1.07995 * 119.97333 * 179.97438 * 15 14 13 30 30 H 1.08998 * 110.57249 * 268.28647 * 21 20 17 31 31 H 1.09000 * 110.69805 * 145.47826 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 1 3.5872 -3.1754 0.8411 12 7 3.6324 -3.2936 -1.2559 13 6 5.5234 -2.6383 0.1224 14 6 6.3088 -2.7086 -1.0133 15 6 7.6868 -2.7111 -0.9054 16 6 8.2854 -2.6425 0.3428 17 6 7.4953 -2.5649 1.4864 18 6 6.1136 -2.5692 1.3716 19 17 5.1241 -2.4798 2.7951 20 8 8.3125 -2.5126 2.5788 21 6 9.6015 -2.9600 2.1184 22 8 9.5979 -2.6286 0.7172 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6804 0.8889 25 1 3.8745 -0.6800 -0.8911 26 1 2.6287 -3.3627 -1.3318 27 1 4.0230 -2.8124 -2.0521 28 1 5.8447 -2.7617 -1.9870 29 1 8.2976 -2.7665 -1.7943 30 1 9.7055 -4.0361 2.2573 31 1 10.4009 -2.4292 2.6356 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260675383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:21 Heat of formation + Delta-G solvation = -43.385194 kcal Electronic energy + Delta-G solvation = -18257.941221 eV Core-core repulsion = 15145.254620 eV Total energy + Delta-G solvation = -3112.686600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.19340 -38.66058 -36.48838 -35.98604 -35.17287 -32.42786 -30.42460 -29.56064 -28.61895 -25.98971 -24.59646 -22.86565 -22.25443 -20.16029 -18.02415 -17.58162 -17.47667 -17.12728 -16.20526 -15.32736 -14.75396 -14.49515 -14.23127 -14.12834 -13.50095 -13.45671 -13.06081 -12.94117 -12.65170 -12.23910 -12.09028 -11.70055 -11.50171 -11.07921 -10.85410 -10.55609 -10.40447 -10.26049 -9.83498 -9.29532 -8.63093 -8.55902 -8.15100 -7.82704 -6.13263 -4.12855 1.10557 1.15135 2.31245 2.65828 3.24967 3.32886 3.34096 3.39260 3.54361 4.38329 4.51575 4.57762 4.69743 5.03189 5.05343 5.07889 5.20750 5.29497 5.55875 5.76022 5.89989 6.03035 6.25309 6.32691 6.42540 6.57718 7.01586 7.04169 7.15860 7.64821 7.81850 8.10316 8.40053 8.88903 9.48934 10.99247 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.005976 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.980157 B = 4684.102143 C = 4884.764240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.036 4.036 10 C 0.136 3.864 11 H 0.095 0.905 12 N -0.838 5.838 13 C -0.037 4.037 14 C -0.089 4.089 15 C -0.095 4.095 16 C 0.024 3.976 17 C 0.037 3.963 18 C -0.018 4.018 19 Cl -0.043 7.043 20 O -0.301 6.301 21 C 0.213 3.787 22 O -0.309 6.309 23 H 0.264 0.736 24 H 0.025 0.975 25 H 0.013 0.987 26 H 0.356 0.644 27 H 0.328 0.672 28 H 0.149 0.851 29 H 0.138 0.862 30 H 0.083 0.917 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.378 -6.202 0.828 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.075 4.075 10 C 0.024 3.976 11 H 0.113 0.887 12 N -0.368 5.368 13 C -0.039 4.039 14 C -0.108 4.108 15 C -0.113 4.113 16 C -0.020 4.020 17 C -0.008 4.008 18 C -0.046 4.046 19 Cl -0.014 7.014 20 O -0.217 6.217 21 C 0.101 3.899 22 O -0.225 6.225 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.171 0.829 27 H 0.140 0.860 28 H 0.167 0.833 29 H 0.156 0.844 30 H 0.100 0.900 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.673 -6.611 1.368 18.919 hybrid contribution 0.078 1.921 0.152 1.929 sum 17.751 -4.690 1.520 18.423 Atomic orbital electron populations 1.69898 1.06231 1.27015 1.50438 1.24953 0.94647 0.99035 0.94286 0.86866 0.80630 0.83868 0.78551 1.20300 1.21261 1.18885 1.20973 0.88720 0.94575 1.51745 0.90641 1.20290 0.97861 0.92112 0.97240 1.20358 0.86362 0.96596 0.94249 0.88720 1.59264 1.18069 1.56227 1.03248 1.19920 0.98097 0.96272 0.89609 1.20759 0.91154 0.99710 0.99145 1.20144 0.94518 1.02633 0.94038 1.19563 0.82060 1.05878 0.94514 1.19266 0.91052 1.05005 0.85457 1.19676 0.86559 1.08612 0.89771 1.98389 1.69095 1.96448 1.37431 1.87404 1.20103 1.83325 1.30854 1.25594 0.86164 1.00344 0.77793 1.87337 1.22259 1.87127 1.25821 0.92618 0.95638 0.96903 0.82865 0.85973 0.83324 0.84415 0.89981 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.96 55.43 0.77 -26.01 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -13.93 9.10 -34.44 -0.31 -14.24 16 8 H 0.08 2.13 7.39 -52.49 -0.39 1.75 16 9 C -0.04 -0.82 3.67 -27.88 -0.10 -0.92 16 10 C 0.14 2.59 2.50 -68.87 -0.17 2.42 16 11 H 0.09 1.93 7.12 -51.93 -0.37 1.56 16 12 N -0.84 -14.28 8.79 -5.66 -0.05 -14.33 16 13 C -0.04 -0.64 5.06 -104.58 -0.53 -1.17 16 14 C -0.09 -1.28 9.26 -39.58 -0.37 -1.65 16 15 C -0.09 -1.24 10.06 -39.46 -0.40 -1.64 16 16 C 0.02 0.35 7.15 -39.09 -0.28 0.07 16 17 C 0.04 0.60 6.94 -39.07 -0.27 0.33 16 18 C -0.02 -0.32 6.32 -39.40 -0.25 -0.57 16 19 Cl -0.04 -0.76 27.18 -51.86 -1.41 -2.17 16 20 O -0.30 -4.37 11.40 -45.79 -0.52 -4.89 16 21 C 0.21 2.18 8.90 101.05 0.90 3.08 16 22 O -0.31 -4.02 11.40 -45.68 -0.52 -4.54 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.03 0.61 6.99 -51.93 -0.36 0.25 16 25 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 26 H 0.36 6.48 7.90 -39.29 -0.31 6.17 16 27 H 0.33 5.03 7.20 -39.29 -0.28 4.74 16 28 H 0.15 1.84 6.28 -52.49 -0.33 1.51 16 29 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 278.49 15.07 4.20 4.20 Total: -1.00 -30.61 278.49 -6.95 -37.56 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -2.87 Total: 5.74 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.88 Total: -12.33 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.72 Total: -40.34 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -1.04 Total: -9.43 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.41 Total: -2.17 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.61 -6.95 -37.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260675383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.821 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds