Wall clock time and date at job start Mon Mar 30 2020 07:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99887 * 2 1 4 4 H 1.48499 * 109.47256 * 270.00242 * 3 2 1 5 5 H 1.48497 * 109.47533 * 30.00265 * 3 2 1 6 6 H 1.48503 * 109.47054 * 150.00421 * 3 2 1 7 7 C 1.37877 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00106 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99605 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46750 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47187 * 304.99892 * 10 9 7 12 12 N 1.46897 * 109.47456 * 65.00055 * 10 9 7 13 13 C 1.50702 * 109.46907 * 185.00420 * 10 9 7 14 14 C 1.38261 * 119.93202 * 265.02179 * 13 10 9 15 15 C 1.38223 * 120.14839 * 180.02562 * 14 13 10 16 16 C 1.38589 * 120.05360 * 359.97438 * 15 14 13 17 17 C 1.39215 * 119.83228 * 359.70655 * 16 15 14 18 18 C 1.38332 * 119.93762 * 85.00209 * 13 10 9 19 19 Cl 1.73599 * 119.99355 * 359.97438 * 18 13 10 20 20 O 1.36530 * 108.64468 * 179.80256 * 17 16 15 21 21 C 1.43998 * 105.55209 * 343.15164 * 20 17 16 22 22 O 1.36498 * 131.51699 * 180.02562 * 16 15 14 23 23 H 0.97004 * 120.00117 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46841 * 60.00310 * 9 7 2 25 25 H 1.08992 * 109.47135 * 299.99885 * 9 7 2 26 26 H 1.00897 * 111.00225 * 296.04909 * 12 10 9 27 27 H 1.00906 * 110.99336 * 59.99943 * 12 10 9 28 28 H 1.07995 * 119.92809 * 0.02562 * 14 13 10 29 29 H 1.07995 * 119.97333 * 179.97438 * 15 14 13 30 30 H 1.08998 * 110.57249 * 268.28647 * 21 20 17 31 31 H 1.09000 * 110.69805 * 145.47826 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 1 3.5872 -3.1754 0.8411 12 7 3.6324 -3.2936 -1.2559 13 6 5.5234 -2.6383 0.1224 14 6 6.3088 -2.7086 -1.0133 15 6 7.6868 -2.7111 -0.9054 16 6 8.2854 -2.6425 0.3428 17 6 7.4953 -2.5649 1.4864 18 6 6.1136 -2.5692 1.3716 19 17 5.1241 -2.4798 2.7951 20 8 8.3125 -2.5126 2.5788 21 6 9.6015 -2.9600 2.1184 22 8 9.5979 -2.6286 0.7172 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6804 0.8889 25 1 3.8745 -0.6800 -0.8911 26 1 2.6287 -3.3627 -1.3318 27 1 4.0230 -2.8124 -2.0521 28 1 5.8447 -2.7617 -1.9870 29 1 8.2976 -2.7665 -1.7943 30 1 9.7055 -4.0361 2.2573 31 1 10.4009 -2.4292 2.6356 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260675383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:21 Heat of formation + Delta-G solvation = -64.915405 kcal Electronic energy + Delta-G solvation = -18258.874841 eV Core-core repulsion = 15145.254620 eV Total energy + Delta-G solvation = -3113.620220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.21723 -39.89760 -37.64316 -37.17058 -36.63882 -34.44909 -31.59095 -30.76975 -30.38446 -26.97555 -26.06620 -23.99895 -23.77902 -21.67293 -19.25586 -19.05828 -18.57873 -18.40620 -17.52521 -16.57230 -16.35514 -15.84741 -15.56342 -15.20886 -15.06752 -14.80334 -14.44171 -14.10458 -14.05780 -14.01328 -13.47812 -13.07608 -12.78833 -12.63711 -12.36868 -12.11533 -12.02738 -11.74961 -11.57584 -11.25222 -10.77704 -9.77749 -9.48090 -9.07474 -8.29498 -6.32019 -0.04650 -0.00431 1.04964 1.30607 1.35349 1.45240 1.66047 2.33481 2.38059 2.41899 3.06058 3.46003 3.64001 3.76495 3.94074 4.02865 4.09416 4.15119 4.39604 4.52165 4.62758 4.75880 4.81846 5.06390 5.16618 5.24816 5.29818 5.50453 5.61416 5.97553 6.22599 6.35134 6.72045 6.74882 7.32541 8.86086 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.005976 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.980157 B = 4684.102143 C = 4884.764240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.016 3.984 3 Si 0.933 3.067 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.517 4.517 8 H 0.047 0.953 9 C -0.030 4.030 10 C 0.147 3.853 11 H 0.074 0.926 12 N -0.827 5.827 13 C -0.059 4.059 14 C -0.083 4.083 15 C -0.083 4.083 16 C 0.027 3.973 17 C 0.026 3.974 18 C -0.037 4.037 19 Cl -0.062 7.062 20 O -0.319 6.319 21 C 0.203 3.797 22 O -0.312 6.312 23 H 0.265 0.735 24 H 0.013 0.987 25 H 0.021 0.979 26 H 0.349 0.651 27 H 0.341 0.659 28 H 0.170 0.830 29 H 0.175 0.825 30 H 0.107 0.893 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.414 -6.040 -0.261 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.182 4.182 3 Si 0.758 3.242 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.555 4.555 8 H 0.065 0.935 9 C -0.069 4.069 10 C 0.035 3.965 11 H 0.092 0.908 12 N -0.357 5.357 13 C -0.061 4.061 14 C -0.101 4.101 15 C -0.102 4.102 16 C -0.017 4.017 17 C -0.020 4.020 18 C -0.065 4.065 19 Cl -0.033 7.033 20 O -0.236 6.236 21 C 0.093 3.907 22 O -0.229 6.229 23 H 0.074 0.926 24 H 0.032 0.968 25 H 0.040 0.960 26 H 0.163 0.837 27 H 0.155 0.845 28 H 0.187 0.813 29 H 0.192 0.808 30 H 0.125 0.875 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 20.747 -6.463 0.271 21.732 hybrid contribution -0.759 1.766 0.516 1.990 sum 19.988 -4.697 0.787 20.547 Atomic orbital electron populations 1.70033 1.07912 1.27879 1.52593 1.25765 0.95336 1.02651 0.94437 0.85911 0.79391 0.79706 0.79208 1.18812 1.21341 1.18238 1.21254 0.90920 0.93333 1.49961 0.93482 1.20201 0.95010 0.94867 0.96804 1.20010 0.88142 0.93911 0.94399 0.90810 1.59230 1.17491 1.55844 1.03099 1.19745 0.96770 0.98859 0.90684 1.21010 0.91688 0.98469 0.98942 1.20506 0.94204 1.00564 0.94885 1.19821 0.82564 1.04830 0.94511 1.19367 0.90826 1.05133 0.86652 1.19830 0.87228 1.10177 0.89277 1.98372 1.69745 1.96657 1.38548 1.87381 1.21485 1.83622 1.31100 1.26191 0.85298 1.02518 0.76672 1.87331 1.21223 1.87088 1.27221 0.92613 0.96830 0.96045 0.83742 0.84520 0.81267 0.80750 0.87538 0.81716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.58 13.96 21.45 0.30 -57.28 16 2 C 0.02 0.90 5.47 84.65 0.46 1.36 16 3 Si 0.93 44.10 27.47 68.60 1.88 45.99 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 7 C -0.52 -28.03 9.10 25.60 0.23 -27.80 16 8 H 0.05 2.76 7.39 -2.91 -0.02 2.74 16 9 C -0.03 -1.34 3.67 29.85 0.11 -1.23 16 10 C 0.15 5.60 2.50 44.17 0.11 5.71 16 11 H 0.07 3.09 7.12 -2.39 -0.02 3.07 16 12 N -0.83 -27.49 8.79 -171.81 -1.51 -29.00 16 13 C -0.06 -1.95 5.06 -19.84 -0.10 -2.05 16 14 C -0.08 -2.13 9.26 22.27 0.21 -1.93 16 15 C -0.08 -1.87 10.06 22.35 0.22 -1.64 16 16 C 0.03 0.72 7.15 22.59 0.16 0.88 16 17 C 0.03 0.78 6.94 22.60 0.16 0.94 16 18 C -0.04 -1.27 6.32 22.39 0.14 -1.13 16 19 Cl -0.06 -2.25 27.18 -2.72 -0.07 -2.32 16 20 O -0.32 -8.70 11.40 -76.40 -0.87 -9.57 16 21 C 0.20 3.52 8.90 113.37 1.01 4.53 16 22 O -0.31 -7.03 11.40 -76.03 -0.87 -7.90 16 23 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.01 0.64 6.99 -2.39 -0.02 0.62 16 25 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 26 H 0.35 12.73 7.90 -89.70 -0.71 12.03 16 27 H 0.34 9.77 7.20 -89.69 -0.65 9.12 16 28 H 0.17 3.56 6.28 -2.91 -0.02 3.54 16 29 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.17 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -66.92 278.49 1.36 -65.56 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -0.21 Total: 16.90 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 2.71 Total: -22.37 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -1.21 Total: -86.28 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -1.74 Total: -17.47 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.32 kcal Total: -66.92 1.36 -65.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260675383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.641 kcal (2) G-P(sol) polarization free energy of solvation -66.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds