Wall clock time and date at job start Mon Mar 30 2020 07:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00183 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99994 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 11 11 N 1.46902 * 109.46927 * 60.00800 * 9 7 2 12 12 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 13 13 C 1.38254 * 119.95237 * 265.00714 * 12 9 7 14 14 C 1.38182 * 120.12046 * 180.08261 * 13 12 9 15 15 C 1.38742 * 120.09314 * 359.96699 * 14 13 12 16 16 C 1.38922 * 119.82147 * 359.89401 * 15 14 13 17 17 C 1.38282 * 119.94738 * 84.72758 * 12 9 7 18 18 Cl 1.73599 * 119.98189 * 359.97438 * 17 12 9 19 19 O 1.36133 * 120.79128 * 180.23910 * 16 15 14 20 20 C 1.43184 * 116.68839 * 342.61093 * 19 16 15 21 21 C 1.53474 * 108.22780 * 46.27480 * 20 19 16 22 22 O 1.36104 * 119.39382 * 179.64488 * 15 14 13 23 23 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 24 24 H 1.00906 * 110.99720 * 296.04201 * 11 9 7 25 25 H 1.00896 * 111.00210 * 59.99787 * 11 9 7 26 26 H 1.07993 * 119.93949 * 0.05297 * 13 12 9 27 27 H 1.08004 * 119.95431 * 179.97438 * 14 13 12 28 28 H 1.08996 * 109.70878 * 165.95457 * 20 19 16 29 29 H 1.08997 * 109.71064 * 286.59139 * 20 19 16 30 30 H 1.09002 * 109.70697 * 59.97544 * 21 20 19 31 31 H 1.08998 * 109.70223 * 180.55767 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4062 -2.5767 -1.1998 12 6 2.2303 -3.6446 -0.0005 13 6 2.5996 -4.2371 -1.1939 14 6 3.4960 -5.2887 -1.1978 15 6 4.0288 -5.7531 -0.0039 16 6 3.6604 -5.1564 1.1954 17 6 2.7626 -4.0978 1.1926 18 17 2.3028 -3.3465 2.6885 19 8 4.1747 -5.5930 2.3778 20 6 4.7801 -6.8906 2.3758 21 6 5.6998 -6.9893 1.1511 22 8 4.9049 -6.7945 -0.0236 23 1 -0.4849 0.8400 0.0004 24 1 -0.3012 -1.8572 -1.1909 25 1 0.9639 -2.5251 -2.0390 26 1 2.1865 -3.8776 -2.1246 27 1 3.7823 -5.7498 -2.1315 28 1 5.3644 -7.0250 3.2861 29 1 4.0071 -7.6568 2.3178 30 1 6.4692 -6.2191 1.2062 31 1 6.1667 -7.9738 1.1206 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260779200.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:27 Heat of formation + Delta-G solvation = -53.345732 kcal Electronic energy + Delta-G solvation = -18496.975240 eV Core-core repulsion = 15383.856718 eV Total energy + Delta-G solvation = -3113.118522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.95133 -37.90074 -37.03939 -35.51822 -34.43580 -31.63437 -30.43929 -29.83550 -27.83778 -26.04051 -24.55887 -22.50108 -21.86544 -19.78046 -18.36116 -17.04271 -16.90781 -16.39511 -15.37321 -15.23699 -14.76454 -14.36124 -14.25096 -14.10906 -13.84301 -13.09935 -12.79445 -12.51376 -12.18948 -11.81486 -11.33336 -11.12691 -10.95659 -10.83561 -10.78153 -10.44699 -10.28198 -10.20086 -9.89237 -9.52445 -8.63437 -7.90158 -7.60000 -7.20528 -6.07837 -4.22876 1.64480 1.79245 2.86549 3.23675 3.25695 3.31718 3.36227 3.38404 4.12327 4.32553 4.37926 4.81925 4.89547 5.02285 5.14921 5.23143 5.43780 5.54519 5.65123 5.92022 6.12640 6.35959 6.40346 6.79612 6.91962 7.10383 7.11866 7.64363 7.67936 7.76301 8.06309 8.65673 8.91279 9.08479 9.47495 10.90718 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.006352 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.899338 B = 4406.823455 C = 4746.293326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.055 0.945 9 C 0.241 3.759 10 H 0.062 0.938 11 N -0.851 5.851 12 C -0.015 4.015 13 C -0.097 4.097 14 C -0.113 4.113 15 C 0.029 3.971 16 C 0.051 3.949 17 C -0.032 4.032 18 Cl -0.049 7.049 19 O -0.299 6.299 20 C 0.021 3.979 21 C 0.021 3.979 22 O -0.309 6.309 23 H 0.265 0.735 24 H 0.358 0.642 25 H 0.311 0.689 26 H 0.140 0.860 27 H 0.130 0.870 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.282 -11.936 1.525 14.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.074 0.926 9 C 0.131 3.869 10 H 0.080 0.920 11 N -0.381 5.381 12 C -0.016 4.016 13 C -0.116 4.116 14 C -0.132 4.132 15 C -0.016 4.016 16 C 0.005 3.995 17 C -0.060 4.060 18 Cl -0.020 7.020 19 O -0.213 6.213 20 C -0.055 4.055 21 C -0.055 4.055 22 O -0.224 6.224 23 H 0.075 0.925 24 H 0.175 0.825 25 H 0.121 0.879 26 H 0.158 0.842 27 H 0.148 0.852 28 H 0.135 0.865 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.885 -12.500 1.988 14.912 hybrid contribution 1.074 1.831 0.137 2.127 sum 8.959 -10.669 2.125 14.093 Atomic orbital electron populations 1.69733 1.05788 1.27187 1.50511 1.24956 0.94904 0.99152 0.94364 0.86536 0.80012 0.83051 0.78119 1.20643 1.21099 1.19798 1.21661 0.93520 0.90549 1.51696 0.92636 1.18040 0.89001 0.87467 0.92388 0.92018 1.59571 1.18428 1.56258 1.03866 1.20281 0.95924 0.95891 0.89519 1.20756 0.97063 0.95125 0.98659 1.20453 0.99477 0.97912 0.95331 1.18530 0.96756 0.93383 0.92889 1.18432 0.98512 0.98084 0.84439 1.19956 0.99803 0.97066 0.89196 1.98335 1.91068 1.81101 1.31462 1.86383 1.72828 1.33196 1.28921 1.23567 0.97106 0.84743 1.00087 1.23540 0.93115 1.03906 0.84905 1.86266 1.50904 1.46673 1.38585 0.92461 0.82476 0.87926 0.84187 0.85163 0.86493 0.90784 0.90826 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 11.54 55.43 0.64 -23.64 16 2 C 0.07 1.83 5.38 -17.82 -0.10 1.73 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.14 8.71 -34.44 -0.30 -14.44 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.24 5.91 2.45 -70.01 -0.17 5.74 16 10 H 0.06 1.68 7.13 -51.93 -0.37 1.31 16 11 N -0.85 -19.64 8.79 -6.65 -0.06 -19.70 16 12 C -0.01 -0.32 5.00 -104.60 -0.52 -0.84 16 13 C -0.10 -1.85 9.26 -39.60 -0.37 -2.22 16 14 C -0.11 -1.92 9.96 -39.42 -0.39 -2.32 16 15 C 0.03 0.50 6.49 -39.14 -0.25 0.25 16 16 C 0.05 0.96 6.49 -39.12 -0.25 0.71 16 17 C -0.03 -0.68 6.33 -39.35 -0.25 -0.93 16 18 Cl -0.05 -1.03 26.90 -51.86 -1.39 -2.43 16 19 O -0.30 -5.01 9.84 -32.96 -0.32 -5.33 16 20 C 0.02 0.24 7.26 37.40 0.27 0.51 16 21 C 0.02 0.23 7.26 37.40 0.27 0.50 16 22 O -0.31 -4.64 10.42 -32.87 -0.34 -4.98 16 23 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.36 8.90 7.08 -39.29 -0.28 8.62 16 25 H 0.31 6.67 7.20 -39.29 -0.28 6.38 16 26 H 0.14 2.47 6.28 -52.49 -0.33 2.14 16 27 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 28 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 277.28 15.07 4.18 4.18 Total: -1.00 -29.13 277.28 -7.30 -36.43 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -2.92 Total: 10.81 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -2.06 Total: -11.31 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.58 Total: -43.34 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.67 Total: -10.31 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.39 Total: -2.43 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.13 -7.30 -36.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260779200.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.911 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds