Wall clock time and date at job start Mon Mar 30 2020 07:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00183 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99994 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 11 11 N 1.46902 * 109.46927 * 60.00800 * 9 7 2 12 12 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 13 13 C 1.38254 * 119.95237 * 265.00714 * 12 9 7 14 14 C 1.38182 * 120.12046 * 180.08261 * 13 12 9 15 15 C 1.38742 * 120.09314 * 359.96699 * 14 13 12 16 16 C 1.38922 * 119.82147 * 359.89401 * 15 14 13 17 17 C 1.38282 * 119.94738 * 84.72758 * 12 9 7 18 18 Cl 1.73599 * 119.98189 * 359.97438 * 17 12 9 19 19 O 1.36133 * 120.79128 * 180.23910 * 16 15 14 20 20 C 1.43184 * 116.68839 * 342.61093 * 19 16 15 21 21 C 1.53474 * 108.22780 * 46.27480 * 20 19 16 22 22 O 1.36104 * 119.39382 * 179.64488 * 15 14 13 23 23 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 24 24 H 1.00906 * 110.99720 * 296.04201 * 11 9 7 25 25 H 1.00896 * 111.00210 * 59.99787 * 11 9 7 26 26 H 1.07993 * 119.93949 * 0.05297 * 13 12 9 27 27 H 1.08004 * 119.95431 * 179.97438 * 14 13 12 28 28 H 1.08996 * 109.70878 * 165.95457 * 20 19 16 29 29 H 1.08997 * 109.71064 * 286.59139 * 20 19 16 30 30 H 1.09002 * 109.70697 * 59.97544 * 21 20 19 31 31 H 1.08998 * 109.70223 * 180.55767 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 0.4062 -2.5767 -1.1998 12 6 2.2303 -3.6446 -0.0005 13 6 2.5996 -4.2371 -1.1939 14 6 3.4960 -5.2887 -1.1978 15 6 4.0288 -5.7531 -0.0039 16 6 3.6604 -5.1564 1.1954 17 6 2.7626 -4.0978 1.1926 18 17 2.3028 -3.3465 2.6885 19 8 4.1747 -5.5930 2.3778 20 6 4.7801 -6.8906 2.3758 21 6 5.6998 -6.9893 1.1511 22 8 4.9049 -6.7945 -0.0236 23 1 -0.4849 0.8400 0.0004 24 1 -0.3012 -1.8572 -1.1909 25 1 0.9639 -2.5251 -2.0390 26 1 2.1865 -3.8776 -2.1246 27 1 3.7823 -5.7498 -2.1315 28 1 5.3644 -7.0250 3.2861 29 1 4.0071 -7.6568 2.3178 30 1 6.4692 -6.2191 1.2062 31 1 6.1667 -7.9738 1.1206 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260779200.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:27 Heat of formation + Delta-G solvation = -73.020323 kcal Electronic energy + Delta-G solvation = -18497.828394 eV Core-core repulsion = 15383.856718 eV Total energy + Delta-G solvation = -3113.971676 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.18551 -39.35708 -38.25348 -37.08902 -36.21133 -33.44806 -31.68394 -31.29694 -29.21593 -27.90297 -25.89696 -24.01818 -23.32000 -21.16197 -19.61071 -18.62486 -18.29839 -17.98652 -17.05685 -16.51012 -16.23428 -15.86915 -15.51285 -15.36790 -15.16714 -14.81954 -14.26897 -14.00075 -13.68882 -13.52684 -12.93935 -12.76400 -12.65845 -12.56967 -12.09641 -11.97665 -11.86621 -11.70232 -11.45037 -11.24428 -10.64826 -9.39342 -9.19452 -8.94569 -8.07553 -6.31191 0.19355 0.34915 1.32860 1.37391 1.40478 1.49695 2.08011 2.26976 2.38749 2.70524 3.10350 3.37877 3.77539 3.95615 4.00485 4.19727 4.26905 4.38736 4.52808 4.62112 4.68186 4.75681 5.02145 5.11206 5.38586 5.63347 5.68279 5.79273 5.92816 6.07667 6.39085 6.68225 6.94579 7.16210 7.43077 8.87000 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.006352 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.899338 B = 4406.823455 C = 4746.293326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.027 3.973 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.042 0.958 9 C 0.249 3.751 10 H 0.026 0.974 11 N -0.842 5.842 12 C -0.045 4.045 13 C -0.102 4.102 14 C -0.104 4.104 15 C 0.037 3.963 16 C 0.050 3.950 17 C -0.056 4.056 18 Cl -0.064 7.064 19 O -0.318 6.318 20 C 0.011 3.989 21 C 0.016 3.984 22 O -0.312 6.312 23 H 0.267 0.733 24 H 0.348 0.652 25 H 0.321 0.679 26 H 0.149 0.851 27 H 0.164 0.836 28 H 0.155 0.845 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.237 -13.483 0.975 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.173 4.173 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.060 0.940 9 C 0.138 3.862 10 H 0.044 0.956 11 N -0.371 5.371 12 C -0.046 4.046 13 C -0.120 4.120 14 C -0.123 4.123 15 C -0.008 4.008 16 C 0.003 3.997 17 C -0.084 4.084 18 Cl -0.035 7.035 19 O -0.233 6.233 20 C -0.064 4.064 21 C -0.059 4.059 22 O -0.227 6.227 23 H 0.076 0.924 24 H 0.163 0.837 25 H 0.132 0.868 26 H 0.167 0.833 27 H 0.182 0.818 28 H 0.172 0.828 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.861 -14.074 1.436 17.245 hybrid contribution 0.579 2.134 0.367 2.242 sum 10.440 -11.939 1.803 15.962 Atomic orbital electron populations 1.69826 1.06703 1.27805 1.51025 1.25597 0.95640 1.01821 0.94227 0.85676 0.78561 0.79765 0.78353 1.19668 1.20847 1.20281 1.21803 0.92903 0.91919 1.51558 0.93994 1.17737 0.88929 0.88195 0.91318 0.95617 1.59518 1.18111 1.55483 1.04026 1.20113 0.96945 0.96428 0.91136 1.20861 0.97585 0.95703 0.97869 1.20755 0.98010 0.96794 0.96710 1.18656 0.96549 0.93292 0.92350 1.18439 0.97914 0.97474 0.85833 1.20132 1.01317 0.98427 0.88483 1.98312 1.91356 1.81564 1.32314 1.86355 1.72901 1.35845 1.28155 1.24040 0.97628 0.82437 1.02261 1.23962 0.92366 1.06551 0.83029 1.86270 1.50529 1.45226 1.40682 0.92379 0.83703 0.86839 0.83306 0.81809 0.82780 0.90110 0.90509 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.51 11.54 21.45 0.25 -50.26 16 2 C 0.03 1.47 5.38 84.65 0.46 1.93 16 3 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.54 -29.30 8.71 25.60 0.22 -29.08 16 8 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 9 C 0.25 12.54 2.45 43.42 0.11 12.65 16 10 H 0.03 1.48 7.13 -2.39 -0.02 1.46 16 11 N -0.84 -39.57 8.79 -174.94 -1.54 -41.11 16 12 C -0.04 -1.98 5.00 -19.85 -0.10 -2.08 16 13 C -0.10 -3.78 9.26 22.26 0.21 -3.57 16 14 C -0.10 -3.31 9.96 22.38 0.22 -3.09 16 15 C 0.04 1.20 6.49 22.55 0.15 1.35 16 16 C 0.05 1.82 6.49 22.57 0.15 1.97 16 17 C -0.06 -2.40 6.33 22.42 0.14 -2.25 16 18 Cl -0.06 -2.81 26.90 -2.72 -0.07 -2.89 16 19 O -0.32 -10.17 9.84 -82.82 -0.81 -10.99 16 20 C 0.01 0.21 7.26 72.14 0.52 0.73 16 21 C 0.02 0.27 7.26 72.14 0.52 0.80 16 22 O -0.31 -8.25 10.42 -82.49 -0.86 -9.11 16 23 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 24 H 0.35 17.67 7.08 -89.69 -0.63 17.03 16 25 H 0.32 13.82 7.20 -89.70 -0.65 13.18 16 26 H 0.15 5.11 6.28 -2.91 -0.02 5.09 16 27 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 28 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.16 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -63.99 277.28 1.50 -62.50 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -0.09 Total: 27.11 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 2.60 Total: -20.64 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.29 Total: -91.37 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -1.67 Total: -20.09 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.07 Total: -2.89 kcal Total: -63.99 1.50 -62.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260779200.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.524 kcal (2) G-P(sol) polarization free energy of solvation -63.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds