Wall clock time and date at job start Mon Mar 30 2020 07:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30921 * 1 3 3 Si 1.86800 * 120.00009 * 2 1 4 4 H 1.48503 * 109.46828 * 269.99716 * 3 2 1 5 5 H 1.48493 * 109.47245 * 29.99689 * 3 2 1 6 6 H 1.48498 * 109.47329 * 149.99954 * 3 2 1 7 7 C 1.39884 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99395 * 163.30117 * 7 2 1 9 9 C 1.40513 * 120.00236 * 343.30395 * 7 2 1 10 10 C 1.40413 * 120.41670 * 334.30228 * 9 7 2 11 11 C 1.37454 * 120.11091 * 180.02562 * 10 9 7 12 12 C 1.50696 * 119.44020 * 180.02562 * 11 10 9 13 13 F 1.39895 * 109.47252 * 209.97784 * 12 11 10 14 14 F 1.39903 * 109.46763 * 329.97500 * 12 11 10 15 15 C 1.38387 * 121.12133 * 359.97438 * 11 10 9 16 16 C 1.39234 * 121.50688 * 0.02960 * 15 11 10 17 17 S 1.76064 * 130.50927 * 180.30225 * 16 15 11 18 18 C 1.75502 * 91.56811 * 180.02562 * 17 16 15 19 19 N 1.38481 * 124.72555 * 179.91288 * 18 17 16 20 20 C 1.34017 * 110.54751 * 359.65508 * 18 17 16 21 21 C 1.39619 * 115.61901 * 0.25983 * 20 18 17 22 22 H 0.96999 * 119.99658 * 0.02562 * 1 2 3 23 23 H 1.07993 * 119.94300 * 359.97438 * 10 9 7 24 24 H 1.09002 * 109.47192 * 89.97605 * 12 11 10 25 25 H 1.08005 * 119.24548 * 179.97438 * 15 11 10 26 26 H 0.96995 * 120.00006 * 179.69877 * 19 18 17 27 27 H 0.97003 * 119.99948 * 359.42798 * 19 18 17 28 28 H 1.07997 * 122.19250 * 180.28602 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.4907 2.0463 -1.4001 5 1 1.4407 2.6527 0.6999 6 1 3.5407 1.4402 0.7000 7 6 2.0086 -1.2115 0.0005 8 1 3.0545 -1.2313 -0.2682 9 6 1.3504 -2.4025 0.3507 10 6 0.2231 -2.3723 1.1872 11 6 -0.4156 -3.5413 1.5261 12 6 -1.6245 -3.4913 2.4245 13 9 -1.7011 -4.6729 3.1695 14 9 -1.5159 -2.3992 3.2920 15 6 0.0320 -4.7634 1.0556 16 6 1.1439 -4.8595 0.2230 17 16 1.9056 -6.2676 -0.5097 18 6 3.1210 -5.2667 -1.2850 19 7 4.1394 -5.7454 -2.0922 20 6 2.9230 -3.9741 -0.9915 21 6 1.8363 -3.7040 -0.1575 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1423 -1.4292 1.5656 24 1 -2.5239 -3.3854 1.8178 25 1 -0.4926 -5.6631 1.3414 26 1 4.7731 -5.1285 -2.4905 27 1 4.2213 -6.6979 -2.2560 28 1 3.5618 -3.1926 -1.3754 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396235385.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:21 Heat of formation + Delta-G solvation = -88.574309 kcal Electronic energy + Delta-G solvation = -17687.302345 eV Core-core repulsion = 14463.612388 eV Total energy + Delta-G solvation = -3223.689957 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 269.038 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.84281 -47.86142 -39.82402 -37.24734 -35.72908 -33.98886 -31.68247 -29.69436 -27.37046 -25.78917 -23.95047 -22.43342 -21.14502 -19.70200 -18.51598 -18.26406 -17.98859 -17.62255 -17.00058 -16.76705 -16.15352 -15.62033 -14.90603 -14.82289 -14.54003 -14.44705 -14.24961 -14.04808 -13.61334 -13.38514 -13.05223 -12.81783 -12.54213 -12.51052 -12.15199 -11.97573 -11.40985 -11.35375 -11.16227 -10.49397 -9.93352 -8.78173 -8.62046 -8.15577 -6.23191 0.18775 0.63266 0.85737 1.12765 1.38931 1.47603 1.54482 1.78511 2.17419 2.59017 3.01943 3.17120 3.45863 3.58035 3.94953 4.20760 4.45158 4.63868 4.86695 5.09676 5.14845 5.17266 5.26208 5.52172 5.81427 5.93454 5.97115 6.12110 6.44824 6.54547 6.77573 6.88324 6.97444 8.21315 Molecular weight = 269.04amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.009690 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.912090 B = 2888.752637 C = 5010.757820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.106 3.894 10 C -0.184 4.184 11 C -0.135 4.135 12 C 0.319 3.681 13 F -0.210 7.210 14 F -0.214 7.214 15 C -0.191 4.191 16 C -0.139 4.139 17 S 0.080 5.920 18 C 0.097 3.903 19 N -0.836 5.836 20 C -0.224 4.224 21 C -0.138 4.138 22 H 0.294 0.706 23 H 0.116 0.884 24 H 0.146 0.854 25 H 0.115 0.885 26 H 0.410 0.590 27 H 0.410 0.590 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 -5.174 -2.172 6.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.101 3.899 10 C -0.206 4.206 11 C -0.139 4.139 12 C 0.266 3.734 13 F -0.191 7.191 14 F -0.195 7.195 15 C -0.216 4.216 16 C -0.254 4.254 17 S 0.335 5.665 18 C -0.122 4.122 19 N -0.383 5.383 20 C -0.259 4.259 21 C -0.145 4.145 22 H 0.105 0.895 23 H 0.133 0.867 24 H 0.162 0.838 25 H 0.133 0.867 26 H 0.242 0.758 27 H 0.240 0.760 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.822 -6.558 -2.169 7.144 hybrid contribution 0.701 2.151 -0.089 2.264 sum 2.523 -4.407 -2.259 5.558 Atomic orbital electron populations 1.69874 1.09021 1.31264 1.32672 1.26840 0.95586 1.04629 0.91229 0.85149 0.79118 0.75532 0.79715 1.18345 1.18854 1.18246 1.19667 0.98111 0.91784 1.39366 0.89960 1.18702 0.91593 0.90615 0.89011 1.20670 1.00493 0.96387 1.03008 1.19930 0.98047 0.94740 1.01150 1.20500 0.99808 0.70162 0.82922 1.92913 1.97619 1.48968 1.79593 1.92922 1.97662 1.55818 1.73105 1.19291 0.99881 0.95996 1.06413 1.22101 1.02143 0.95405 1.05759 1.83101 1.25372 1.07152 1.50923 1.21219 0.96175 0.94617 1.00149 1.41179 1.31131 1.10810 1.55148 1.19154 1.03192 0.94797 1.08731 1.19189 0.99077 0.93371 1.02893 0.89477 0.86651 0.83751 0.86700 0.75798 0.76041 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.10 10.97 21.82 0.24 -39.86 15 2 C 0.03 1.68 5.15 85.23 0.44 2.12 15 3 Si 0.98 36.45 29.59 68.60 2.03 38.48 15 4 H -0.26 -9.15 7.11 99.48 0.71 -8.45 15 5 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 7 C -0.46 -24.05 8.81 23.22 0.20 -23.85 15 8 H 0.08 4.13 7.53 -2.91 -0.02 4.10 15 9 C 0.11 5.68 5.75 -19.63 -0.11 5.57 15 10 C -0.18 -9.60 7.98 22.61 0.18 -9.42 15 11 C -0.14 -6.29 5.72 -20.02 -0.11 -6.40 15 12 C 0.32 12.31 5.63 71.23 0.40 12.71 15 13 F -0.21 -7.85 16.41 44.97 0.74 -7.12 15 14 F -0.21 -8.86 16.42 44.97 0.74 -8.12 15 15 C -0.19 -8.64 9.36 22.54 0.21 -8.43 15 16 C -0.14 -6.36 6.47 22.93 0.15 -6.21 15 17 S 0.08 2.86 23.29 -56.49 -1.32 1.54 15 18 C 0.10 3.45 7.52 82.68 0.62 4.07 15 19 N -0.84 -20.68 9.07 -54.63 -0.50 -21.17 15 20 C -0.22 -9.68 9.76 21.64 0.21 -9.47 15 21 C -0.14 -6.84 6.02 -19.95 -0.12 -6.96 15 22 H 0.29 13.14 8.30 -92.71 -0.77 12.37 15 23 H 0.12 6.25 5.67 -2.91 -0.02 6.24 15 24 H 0.15 4.53 8.14 -2.39 -0.02 4.51 15 25 H 0.12 4.67 7.52 -2.91 -0.02 4.64 15 26 H 0.41 8.57 8.93 -92.71 -0.83 7.75 15 27 H 0.41 7.80 8.95 -92.71 -0.83 6.97 15 28 H 0.12 5.16 7.73 -2.91 -0.02 5.14 15 Total: -1.00 -60.22 268.00 3.60 -56.62 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.41 Total: 25.89 kcal Atomic # 6 Polarization: -48.33 SS G_CDS: 2.07 Total: -46.26 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.26 Total: -61.03 kcal Atomic # 9 Polarization: -16.72 SS G_CDS: 1.48 Total: -15.24 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.32 Total: 1.54 kcal Total: -60.22 3.60 -56.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396235385.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.950 kcal (2) G-P(sol) polarization free energy of solvation -60.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds