Wall clock time and date at job start Mon Mar 30 2020 07:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31093 * 1 3 3 Si 1.86804 * 119.99540 * 2 1 4 4 H 1.48498 * 109.47098 * 266.00954 * 3 2 1 5 5 H 1.48497 * 109.47431 * 26.00782 * 3 2 1 6 6 H 1.48499 * 109.47363 * 146.01222 * 3 2 1 7 7 C 1.39680 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99687 * 349.09053 * 7 2 1 9 9 C 1.40803 * 119.99671 * 169.09230 * 7 2 1 10 10 C 1.36461 * 123.29928 * 326.13787 * 9 7 2 11 11 S 1.69969 * 111.96398 * 180.27298 * 10 9 7 12 12 C 1.75796 * 93.23560 * 0.02562 * 11 10 9 13 13 C 1.39726 * 130.12607 * 179.97438 * 12 11 10 14 14 C 1.38312 * 120.30750 * 180.02562 * 13 12 11 15 15 N 1.39651 * 119.98539 * 179.97438 * 14 13 12 16 16 C 1.39312 * 120.02632 * 0.02562 * 14 13 12 17 17 C 1.37258 * 120.19597 * 359.97438 * 16 14 13 18 18 C 1.50700 * 119.79141 * 180.02562 * 17 16 14 19 19 F 1.39898 * 109.46779 * 264.20298 * 18 17 16 20 20 F 1.39899 * 109.46880 * 24.19758 * 18 17 16 21 21 C 1.39396 * 110.18568 * 0.02562 * 12 11 10 22 22 H 0.96996 * 120.00563 * 0.02562 * 1 2 3 23 23 H 1.07998 * 124.01191 * 0.25860 * 10 9 7 24 24 H 1.07998 * 119.84348 * 0.02562 * 13 12 11 25 25 H 0.96994 * 119.99837 * 180.02562 * 15 14 13 26 26 H 0.96993 * 120.00098 * 0.02715 * 15 14 13 27 27 H 1.08009 * 119.90399 * 180.02562 * 16 14 13 28 28 H 1.09000 * 109.47532 * 144.20152 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 2.5767 1.9978 -1.3967 5 1 1.4026 2.6756 0.6139 6 1 3.4977 1.4662 0.7826 7 6 2.0094 -1.2096 0.0005 8 1 1.4841 -2.1364 0.1780 9 6 3.3984 -1.2205 -0.2302 10 6 4.0257 -0.3440 -1.0670 11 16 5.7014 -0.6201 -1.1367 12 6 5.6269 -1.9674 -0.0099 13 6 6.6462 -2.7854 0.4844 14 6 6.3549 -3.8020 1.3759 15 7 7.3788 -4.6158 1.8652 16 6 5.0404 -4.0150 1.7850 17 6 4.0306 -3.2179 1.3064 18 6 2.6119 -3.4561 1.7555 19 9 1.9535 -4.2565 0.8158 20 9 2.6179 -4.1025 2.9962 21 6 4.3114 -2.1802 0.3991 22 1 -0.4851 0.8400 -0.0004 23 1 3.5178 0.4326 -1.6194 24 1 7.6662 -2.6231 0.1688 25 1 7.1747 -5.3290 2.4901 26 1 8.2940 -4.4679 1.5802 27 1 4.8152 -4.8091 2.4816 28 1 2.0942 -2.5011 1.8458 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396237311.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:54 Heat of formation + Delta-G solvation = -70.752579 kcal Electronic energy + Delta-G solvation = -18173.668807 eV Core-core repulsion = 14950.751659 eV Total energy + Delta-G solvation = -3222.917148 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 269.038 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.33319 -46.30309 -39.10959 -35.93715 -33.62509 -32.17646 -31.03372 -27.66628 -26.54492 -24.79990 -22.41926 -21.33817 -19.73042 -17.74354 -17.40395 -16.71705 -16.53190 -16.07218 -15.56396 -15.04865 -14.77716 -14.48788 -13.75920 -13.34181 -13.15301 -12.93712 -12.67618 -12.38300 -12.17333 -12.12242 -11.70349 -11.41314 -11.03243 -10.78221 -10.48221 -10.24731 -9.96470 -9.59443 -9.40501 -9.21533 -8.51474 -7.20666 -6.93203 -6.75131 -4.54420 1.52853 1.76340 2.56110 3.00790 3.16952 3.25505 3.44508 3.50505 4.00254 4.03744 4.19279 4.42107 4.89496 5.04554 5.39859 5.49873 5.64709 5.79965 5.81408 6.02265 6.18612 6.52878 6.64115 6.78940 6.91622 7.05036 7.36836 7.56229 7.71799 7.92257 8.19163 8.35207 8.71744 10.07710 Molecular weight = 269.04amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.009901 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.386176 B = 2827.436622 C = 4072.749420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.087 3.913 3 Si 0.917 3.083 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.246 1.246 7 C -0.445 4.445 8 H 0.102 0.898 9 C 0.092 3.908 10 C -0.438 4.438 11 S 0.063 5.937 12 C -0.087 4.087 13 C -0.166 4.166 14 C 0.213 3.787 15 N -0.881 5.881 16 C -0.171 4.171 17 C -0.071 4.071 18 C 0.297 3.703 19 F -0.197 7.197 20 F -0.215 7.215 21 C -0.086 4.086 22 H 0.286 0.714 23 H 0.143 0.857 24 H 0.118 0.882 25 H 0.396 0.604 26 H 0.395 0.605 27 H 0.125 0.875 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.749 -4.414 3.595 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.132 4.132 3 Si 0.745 3.255 4 H -0.197 1.197 5 H -0.222 1.222 6 H -0.170 1.170 7 C -0.476 4.476 8 H 0.119 0.881 9 C 0.083 3.917 10 C -0.573 4.573 11 S 0.326 5.674 12 C -0.204 4.204 13 C -0.196 4.196 14 C 0.108 3.892 15 N -0.422 5.422 16 C -0.196 4.196 17 C -0.074 4.074 18 C 0.244 3.756 19 F -0.178 7.178 20 F -0.196 7.196 21 C -0.096 4.096 22 H 0.096 0.904 23 H 0.161 0.839 24 H 0.136 0.864 25 H 0.223 0.777 26 H 0.223 0.777 27 H 0.143 0.857 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.455 -3.537 2.756 11.376 hybrid contribution -0.756 -0.196 0.775 1.100 sum 9.699 -3.733 3.531 10.977 Atomic orbital electron populations 1.69744 1.07730 1.30249 1.36117 1.26040 0.94812 1.01393 0.90928 0.86173 0.80260 0.79484 0.79611 1.19701 1.22217 1.16950 1.19105 0.90020 0.95989 1.42525 0.88062 1.17459 0.93526 0.89920 0.90803 1.23894 0.96451 1.17957 1.18997 1.81786 1.08570 1.29335 1.47725 1.22336 0.95834 1.00475 1.01717 1.19716 0.97760 0.98673 1.03471 1.17240 0.88075 0.90737 0.93140 1.42268 1.07757 1.38170 1.53964 1.20099 0.90992 1.02798 1.05695 1.19806 0.93706 0.95794 0.98094 1.20963 0.91477 0.91327 0.71850 1.92968 1.82387 1.76661 1.65823 1.92894 1.97352 1.84908 1.44448 1.19126 0.92891 0.98029 0.99592 0.90376 0.83939 0.86445 0.77676 0.77742 0.85700 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.33 13.94 55.54 0.77 -20.55 15 2 C 0.09 2.23 5.49 -17.33 -0.10 2.14 15 3 Si 0.92 20.96 24.69 -169.99 -4.20 16.76 15 4 H -0.27 -6.11 6.46 56.52 0.36 -5.75 15 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.25 -5.75 6.99 56.52 0.39 -5.35 15 7 C -0.44 -11.58 7.82 -38.07 -0.30 -11.88 15 8 H 0.10 2.71 5.33 -52.49 -0.28 2.43 15 9 C 0.09 2.29 5.14 -106.18 -0.55 1.75 15 10 C -0.44 -10.51 8.08 30.09 0.24 -10.27 15 11 S 0.06 1.30 22.96 -107.50 -2.47 -1.17 15 12 C -0.09 -1.80 6.43 -38.59 -0.25 -2.05 15 13 C -0.17 -2.86 9.91 -39.00 -0.39 -3.25 15 14 C 0.21 3.37 6.74 -83.87 -0.57 2.81 15 15 N -0.88 -9.76 9.09 32.37 0.29 -9.47 15 16 C -0.17 -3.00 9.21 -39.54 -0.36 -3.36 15 17 C -0.07 -1.45 5.60 -104.06 -0.58 -2.04 15 18 C 0.30 6.06 4.43 36.01 0.16 6.21 15 19 F -0.20 -4.29 16.36 2.25 0.04 -4.25 15 20 F -0.21 -4.03 16.28 2.25 0.04 -3.99 15 21 C -0.09 -1.94 5.99 -105.15 -0.63 -2.57 15 22 H 0.29 6.85 8.30 -40.82 -0.34 6.52 15 23 H 0.14 3.48 4.93 -52.49 -0.26 3.22 15 24 H 0.12 1.71 8.06 -52.49 -0.42 1.28 15 25 H 0.40 3.60 8.84 -40.82 -0.36 3.24 15 26 H 0.39 3.50 8.84 -40.82 -0.36 3.14 15 27 H 0.13 1.94 7.42 -52.48 -0.39 1.55 15 28 H 0.15 3.13 5.65 -51.93 -0.29 2.84 15 LS Contribution 256.08 15.07 3.86 3.86 Total: -1.00 -27.77 256.08 -6.52 -34.29 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -1.54 Total: 7.03 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -3.31 Total: -22.51 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 1.07 Total: -30.02 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.07 Total: -8.25 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.20 Total: 16.76 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.47 Total: -1.17 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.77 -6.52 -34.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396237311.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.461 kcal (2) G-P(sol) polarization free energy of solvation -27.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds