Wall clock time and date at job start Mon Mar 30 2020 07:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31093 * 1 3 3 Si 1.86804 * 119.99540 * 2 1 4 4 H 1.48498 * 109.47098 * 266.00954 * 3 2 1 5 5 H 1.48497 * 109.47431 * 26.00782 * 3 2 1 6 6 H 1.48499 * 109.47363 * 146.01222 * 3 2 1 7 7 C 1.39680 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99687 * 349.09053 * 7 2 1 9 9 C 1.40803 * 119.99671 * 169.09230 * 7 2 1 10 10 C 1.36461 * 123.29928 * 326.13787 * 9 7 2 11 11 S 1.69969 * 111.96398 * 180.27298 * 10 9 7 12 12 C 1.75796 * 93.23560 * 0.02562 * 11 10 9 13 13 C 1.39726 * 130.12607 * 179.97438 * 12 11 10 14 14 C 1.38312 * 120.30750 * 180.02562 * 13 12 11 15 15 N 1.39651 * 119.98539 * 179.97438 * 14 13 12 16 16 C 1.39312 * 120.02632 * 0.02562 * 14 13 12 17 17 C 1.37258 * 120.19597 * 359.97438 * 16 14 13 18 18 C 1.50700 * 119.79141 * 180.02562 * 17 16 14 19 19 F 1.39898 * 109.46779 * 264.20298 * 18 17 16 20 20 F 1.39899 * 109.46880 * 24.19758 * 18 17 16 21 21 C 1.39396 * 110.18568 * 0.02562 * 12 11 10 22 22 H 0.96996 * 120.00563 * 0.02562 * 1 2 3 23 23 H 1.07998 * 124.01191 * 0.25860 * 10 9 7 24 24 H 1.07998 * 119.84348 * 0.02562 * 13 12 11 25 25 H 0.96994 * 119.99837 * 180.02562 * 15 14 13 26 26 H 0.96993 * 120.00098 * 0.02715 * 15 14 13 27 27 H 1.08009 * 119.90399 * 180.02562 * 16 14 13 28 28 H 1.09000 * 109.47532 * 144.20152 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2448 1.6178 0.0000 4 1 2.5767 1.9978 -1.3967 5 1 1.4026 2.6756 0.6139 6 1 3.4977 1.4662 0.7826 7 6 2.0094 -1.2096 0.0005 8 1 1.4841 -2.1364 0.1780 9 6 3.3984 -1.2205 -0.2302 10 6 4.0257 -0.3440 -1.0670 11 16 5.7014 -0.6201 -1.1367 12 6 5.6269 -1.9674 -0.0099 13 6 6.6462 -2.7854 0.4844 14 6 6.3549 -3.8020 1.3759 15 7 7.3788 -4.6158 1.8652 16 6 5.0404 -4.0150 1.7850 17 6 4.0306 -3.2179 1.3064 18 6 2.6119 -3.4561 1.7555 19 9 1.9535 -4.2565 0.8158 20 9 2.6179 -4.1025 2.9962 21 6 4.3114 -2.1802 0.3991 22 1 -0.4851 0.8400 -0.0004 23 1 3.5178 0.4326 -1.6194 24 1 7.6662 -2.6231 0.1688 25 1 7.1747 -5.3290 2.4901 26 1 8.2940 -4.4679 1.5802 27 1 4.8152 -4.8091 2.4816 28 1 2.0942 -2.5011 1.8458 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396237311.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:54 Heat of formation + Delta-G solvation = -88.188718 kcal Electronic energy + Delta-G solvation = -18174.424895 eV Core-core repulsion = 14950.751659 eV Total energy + Delta-G solvation = -3223.673236 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 269.038 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.96835 -47.94324 -40.58239 -37.48973 -35.26532 -33.80013 -32.53967 -29.12943 -28.27258 -26.48117 -23.96112 -22.86711 -21.42427 -19.33299 -19.05420 -18.22900 -18.06583 -17.68059 -17.10414 -16.60745 -16.23025 -16.11529 -15.24907 -14.94031 -14.85352 -14.58929 -14.32710 -13.95619 -13.87914 -13.72806 -13.32553 -13.01045 -12.74347 -12.45218 -12.13386 -11.91244 -11.76785 -11.30101 -11.12490 -10.82110 -10.11309 -8.86427 -8.75037 -8.19962 -6.46116 0.00133 0.25736 0.99890 1.18871 1.30204 1.44555 1.67566 1.74129 2.14362 2.61869 2.77832 3.00915 3.07523 3.40284 3.89179 4.06084 4.13980 4.18092 4.36111 4.64800 4.70528 4.95082 5.09721 5.19365 5.33078 5.53520 5.65618 5.74079 6.25381 6.46749 6.56874 6.78996 7.07290 8.20469 Molecular weight = 269.04amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.009901 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.386176 B = 2827.436622 C = 4072.749420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.054 3.946 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.468 4.468 8 H 0.080 0.920 9 C 0.078 3.922 10 C -0.454 4.454 11 S 0.103 5.897 12 C -0.098 4.098 13 C -0.167 4.167 14 C 0.235 3.765 15 N -0.855 5.855 16 C -0.167 4.167 17 C -0.085 4.085 18 C 0.303 3.697 19 F -0.209 7.209 20 F -0.204 7.204 21 C -0.129 4.129 22 H 0.292 0.708 23 H 0.133 0.867 24 H 0.151 0.849 25 H 0.410 0.590 26 H 0.412 0.588 27 H 0.148 0.852 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.048 -5.354 4.352 14.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.160 4.160 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.178 1.178 7 C -0.501 4.501 8 H 0.098 0.902 9 C 0.068 3.932 10 C -0.588 4.588 11 S 0.365 5.635 12 C -0.214 4.214 13 C -0.197 4.197 14 C 0.126 3.874 15 N -0.396 5.396 16 C -0.191 4.191 17 C -0.089 4.089 18 C 0.249 3.751 19 F -0.190 7.190 20 F -0.186 7.186 21 C -0.139 4.139 22 H 0.103 0.897 23 H 0.150 0.850 24 H 0.169 0.831 25 H 0.240 0.760 26 H 0.242 0.758 27 H 0.165 0.835 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.796 -4.518 3.536 14.941 hybrid contribution -1.585 -0.118 0.605 1.700 sum 12.211 -4.636 4.141 13.702 Atomic orbital electron populations 1.69775 1.08619 1.31178 1.38330 1.26602 0.95302 1.03511 0.90629 0.85475 0.79028 0.77120 0.79496 1.19416 1.20789 1.17841 1.19141 0.91063 0.95562 1.44298 0.90219 1.17682 0.93406 0.91090 0.91044 1.24102 0.99243 1.17167 1.18321 1.81412 1.04968 1.29391 1.47702 1.22587 0.95951 1.01038 1.01859 1.20044 0.98470 0.98018 1.03170 1.17259 0.88380 0.90171 0.91598 1.42237 1.07549 1.37000 1.52845 1.20384 0.91136 1.02348 1.05242 1.19835 0.93976 0.96402 0.98638 1.20725 0.91866 0.90462 0.72002 1.92938 1.82802 1.76853 1.66403 1.92902 1.97353 1.84635 1.43662 1.19119 0.93403 0.99506 1.01880 0.89726 0.84978 0.83097 0.75955 0.75776 0.83467 0.85429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.55 13.94 21.79 0.30 -46.25 15 2 C 0.05 2.89 5.49 85.15 0.47 3.36 15 3 Si 0.96 44.06 24.69 68.60 1.69 45.75 15 4 H -0.27 -11.99 6.46 99.48 0.64 -11.35 15 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 6 H -0.25 -11.85 6.99 99.48 0.70 -11.16 15 7 C -0.47 -25.57 7.82 23.25 0.18 -25.39 15 8 H 0.08 4.57 5.33 -2.91 -0.02 4.55 15 9 C 0.08 3.95 5.14 -20.87 -0.11 3.85 15 10 C -0.45 -21.89 8.08 67.40 0.54 -21.35 15 11 S 0.10 4.07 22.96 -56.49 -1.30 2.77 15 12 C -0.10 -3.85 6.43 22.91 0.15 -3.71 15 13 C -0.17 -5.06 9.91 22.65 0.22 -4.84 15 14 C 0.24 6.38 6.74 38.17 0.26 6.64 15 15 N -0.86 -14.10 9.09 -51.50 -0.47 -14.57 15 16 C -0.17 -5.34 9.21 22.30 0.21 -5.13 15 17 C -0.09 -3.45 5.60 -19.50 -0.11 -3.56 15 18 C 0.30 12.59 4.43 71.24 0.32 12.91 15 19 F -0.21 -9.36 16.36 44.97 0.74 -8.63 15 20 F -0.20 -7.55 16.28 44.97 0.73 -6.82 15 21 C -0.13 -5.82 5.99 -20.21 -0.12 -5.94 15 22 H 0.29 14.53 8.30 -92.71 -0.77 13.76 15 23 H 0.13 6.53 4.93 -2.91 -0.01 6.51 15 24 H 0.15 3.54 8.06 -2.91 -0.02 3.52 15 25 H 0.41 5.10 8.84 -92.71 -0.82 4.28 15 26 H 0.41 4.76 8.84 -92.71 -0.82 3.94 15 27 H 0.15 4.00 7.42 -2.91 -0.02 3.98 15 28 H 0.13 5.81 5.65 -2.39 -0.01 5.80 15 Total: -1.00 -61.67 256.08 3.25 -58.42 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -0.45 Total: 12.48 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 2.01 Total: -43.16 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.16 Total: -60.82 kcal Atomic # 9 Polarization: -16.92 SS G_CDS: 1.47 Total: -15.45 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.69 Total: 45.75 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.30 Total: 2.77 kcal Total: -61.67 3.25 -58.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396237311.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.769 kcal (2) G-P(sol) polarization free energy of solvation -61.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds