Wall clock time and date at job start Mon Mar 30 2020 07:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86808 * 119.99776 * 2 1 4 4 H 1.48503 * 109.46855 * 89.99976 * 3 2 1 5 5 H 1.48495 * 109.47280 * 209.99678 * 3 2 1 6 6 H 1.48497 * 109.46982 * 330.00259 * 3 2 1 7 7 C 1.40082 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00421 * 20.19538 * 7 2 1 9 9 C 1.39881 * 119.99673 * 200.19695 * 7 2 1 10 10 C 1.37048 * 124.84776 * 193.87517 * 9 7 2 11 11 C 1.39543 * 115.04731 * 180.02562 * 10 9 7 12 12 C 1.40314 * 112.95587 * 359.97438 * 11 10 9 13 13 C 1.39493 * 119.90897 * 179.97438 * 12 11 10 14 14 C 1.37889 * 120.62893 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.82215 * 180.02562 * 14 13 12 16 16 F 1.39899 * 109.47499 * 299.98105 * 15 14 13 17 17 F 1.39906 * 109.47175 * 59.98310 * 15 14 13 18 18 C 1.38590 * 120.34792 * 0.02562 * 14 13 12 19 19 C 1.37895 * 120.40171 * 359.97299 * 18 14 13 20 20 N 1.39036 * 119.91835 * 180.02562 * 19 18 14 21 21 S 1.75464 * 124.84865 * 13.57993 * 9 7 2 22 22 H 0.96998 * 119.99597 * 174.73300 * 1 2 3 23 23 H 1.08006 * 122.47708 * 359.97438 * 10 9 7 24 24 H 1.08002 * 119.68347 * 180.02562 * 13 12 11 25 25 H 1.09003 * 109.46943 * 179.97438 * 15 14 13 26 26 H 1.08003 * 119.79595 * 180.02562 * 18 14 13 27 27 H 0.96996 * 120.00324 * 180.02562 * 20 19 18 28 28 H 0.97001 * 119.99596 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 1.4001 5 1 3.5399 1.4404 -0.6999 6 1 1.4397 2.6527 -0.7000 7 6 2.0088 -1.2131 -0.0005 8 1 1.5187 -2.1195 -0.3238 9 6 3.3431 -1.2504 0.4177 10 6 4.1999 -2.2997 0.2098 11 6 5.4881 -2.1194 0.7147 12 6 5.6594 -0.8786 1.3472 13 6 6.8940 -0.5470 1.9055 14 6 7.9529 -1.4280 1.8425 15 6 9.2785 -1.0513 2.4522 16 9 9.7631 0.1072 1.8357 17 9 9.1121 -0.8162 3.8213 18 6 7.8044 -2.6580 1.2213 19 6 6.5966 -3.0150 0.6599 20 7 6.4587 -4.2517 0.0397 21 16 4.1610 0.0424 1.2770 22 1 -0.4849 -0.8365 -0.0771 23 1 3.8999 -3.1999 -0.3061 24 1 7.0216 0.4088 2.3918 25 1 9.9894 -1.8647 2.3071 26 1 8.6396 -3.3413 1.1774 27 1 5.6097 -4.5039 -0.3559 28 1 7.2115 -4.8622 0.0027 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396242922.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:43 Heat of formation + Delta-G solvation = -90.932087 kcal Electronic energy + Delta-G solvation = -17484.542484 eV Core-core repulsion = 14260.750286 eV Total energy + Delta-G solvation = -3223.792198 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 269.038 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.56409 -46.55954 -38.80103 -35.23638 -33.99652 -33.54250 -30.06748 -28.02583 -26.84007 -23.80408 -22.68210 -20.74930 -19.23806 -19.04522 -17.33539 -17.07966 -16.79214 -16.11966 -15.60862 -15.06652 -14.42834 -14.26683 -13.60944 -13.53249 -13.48238 -12.99615 -12.96005 -12.57150 -12.33352 -12.05332 -11.66567 -11.26293 -11.18023 -10.66390 -10.49556 -10.38359 -10.15179 -9.97425 -9.53335 -9.14774 -8.05061 -7.83799 -7.49339 -6.45632 -4.76414 1.68365 2.21833 2.40006 2.86603 3.03063 3.13712 3.36972 3.49071 3.73118 4.17524 4.40260 4.43439 4.74863 4.78051 5.10726 5.52269 5.57433 5.81816 6.18871 6.38095 6.54902 6.64213 6.97610 7.03095 7.11223 7.21258 7.32623 7.45396 7.70280 7.91453 8.11851 8.19507 8.31644 9.46643 Molecular weight = 269.04amu Principal moments of inertia in cm(-1) A = 0.026082 B = 0.006389 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.279872 B = 4381.496141 C = 5194.997269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.047 3.953 3 Si 0.973 3.027 4 H -0.234 1.234 5 H -0.222 1.222 6 H -0.244 1.244 7 C -0.437 4.437 8 H 0.098 0.902 9 C 0.061 3.939 10 C -0.355 4.355 11 C 0.000 4.000 12 C -0.195 4.195 13 C -0.051 4.051 14 C -0.202 4.202 15 C 0.324 3.676 16 F -0.209 7.209 17 F -0.209 7.209 18 C -0.171 4.171 19 C 0.186 3.814 20 N -0.879 5.879 21 S -0.018 6.018 22 H 0.295 0.705 23 H 0.110 0.890 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.396 0.604 28 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.551 -2.678 0.657 9.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.180 4.180 3 Si 0.793 3.207 4 H -0.159 1.159 5 H -0.146 1.146 6 H -0.168 1.168 7 C -0.471 4.471 8 H 0.115 0.885 9 C -0.057 4.057 10 C -0.379 4.379 11 C -0.010 4.010 12 C -0.309 4.309 13 C -0.076 4.076 14 C -0.206 4.206 15 C 0.270 3.730 16 F -0.191 7.191 17 F -0.191 7.191 18 C -0.198 4.198 19 C 0.082 3.918 20 N -0.418 5.418 21 S 0.240 5.760 22 H 0.107 0.893 23 H 0.127 0.873 24 H 0.125 0.875 25 H 0.124 0.876 26 H 0.127 0.873 27 H 0.224 0.776 28 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 8.782 0.361 1.223 8.874 hybrid contribution 0.356 -3.452 -0.636 3.528 sum 9.137 -3.092 0.587 9.664 Atomic orbital electron populations 1.70540 1.07964 1.33970 1.26814 1.27468 0.95695 1.04384 0.90405 0.84305 0.78783 0.74901 0.82705 1.15907 1.14579 1.16790 1.20293 0.94538 0.97792 1.34498 0.88465 1.21203 0.95897 0.93509 0.95092 1.19348 0.92520 1.03542 1.22485 1.17701 0.93169 0.92408 0.97716 1.22011 0.98264 0.98739 1.11887 1.19726 0.90474 0.98131 0.99222 1.19141 0.94100 0.97564 1.09794 1.20221 0.94687 0.84403 0.73703 1.92967 1.89345 1.53878 1.82873 1.92969 1.96782 1.95534 1.33791 1.19504 0.96071 0.97162 1.07052 1.17413 0.92577 0.86072 0.95729 1.42053 1.16190 1.17002 1.66589 1.84009 1.05266 1.23127 1.63585 0.89284 0.87257 0.87503 0.87638 0.87256 0.77649 0.78422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.64 13.65 55.56 0.76 -17.88 15 2 C 0.05 1.12 5.50 -17.29 -0.10 1.02 15 3 Si 0.97 20.33 24.75 -169.99 -4.21 16.12 15 4 H -0.23 -4.72 6.84 56.52 0.39 -4.33 15 5 H -0.22 -4.63 6.55 56.52 0.37 -4.26 15 6 H -0.24 -4.78 7.11 56.52 0.40 -4.38 15 7 C -0.44 -10.80 9.61 -38.28 -0.37 -11.17 15 8 H 0.10 2.41 8.06 -52.49 -0.42 1.99 15 9 C 0.06 1.50 5.71 -39.40 -0.22 1.27 15 10 C -0.36 -8.32 9.74 -39.53 -0.39 -8.71 15 11 C 0.00 0.01 5.87 -106.95 -0.63 -0.62 15 12 C -0.19 -4.44 6.46 -38.33 -0.25 -4.69 15 13 C -0.05 -1.06 9.58 -39.24 -0.38 -1.44 15 14 C -0.20 -3.70 5.37 -104.62 -0.56 -4.26 15 15 C 0.32 4.95 5.44 36.00 0.20 5.15 15 16 F -0.21 -3.45 17.25 2.25 0.04 -3.41 15 17 F -0.21 -3.46 17.25 2.25 0.04 -3.42 15 18 C -0.17 -2.97 9.45 -39.58 -0.37 -3.35 15 19 C 0.19 3.55 6.82 -83.04 -0.57 2.98 15 20 N -0.88 -13.23 9.05 32.83 0.30 -12.93 15 21 S -0.02 -0.41 16.94 -107.50 -1.82 -2.23 15 22 H 0.29 6.80 8.73 -40.82 -0.36 6.44 15 23 H 0.11 2.41 7.36 -52.48 -0.39 2.02 15 24 H 0.11 2.10 8.06 -52.49 -0.42 1.68 15 25 H 0.11 1.21 7.86 -51.93 -0.41 0.80 15 26 H 0.11 1.51 7.93 -52.48 -0.42 1.09 15 27 H 0.40 5.81 7.80 -40.82 -0.32 5.50 15 28 H 0.39 4.57 8.83 -40.82 -0.36 4.21 15 LS Contribution 263.56 15.07 3.97 3.97 Total: -1.00 -26.34 263.56 -6.49 -32.83 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -1.93 Total: 10.76 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -3.63 Total: -23.81 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 1.06 Total: -30.81 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 0.08 Total: -6.82 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.21 Total: 16.12 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -1.82 Total: -2.23 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.34 -6.49 -32.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396242922.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.106 kcal (2) G-P(sol) polarization free energy of solvation -26.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds