Wall clock time and date at job start Mon Mar 30 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30541 * 1 3 3 Si 1.86801 * 120.00074 * 2 1 4 4 H 1.48506 * 109.47266 * 240.00069 * 3 2 1 5 5 H 1.48494 * 109.47284 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47081 * 120.00537 * 3 2 1 7 7 C 1.40271 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00273 * 179.97438 * 7 2 1 9 9 C 1.41656 * 119.99964 * 359.97438 * 7 2 1 10 10 O 1.22061 * 120.00207 * 0.02562 * 9 7 2 11 11 N 1.34703 * 120.00192 * 180.02562 * 9 7 2 12 12 C 1.31545 * 120.00563 * 179.97438 * 11 9 7 13 13 C 1.41332 * 120.00548 * 180.02562 * 12 11 9 14 14 C 1.40663 * 120.78466 * 359.97438 * 13 12 11 15 15 O 1.35405 * 119.86262 * 0.02562 * 14 13 12 16 16 C 1.39303 * 120.27807 * 179.72515 * 14 13 12 17 17 C 1.36009 * 121.82354 * 0.27906 * 16 14 13 18 18 C 1.40841 * 120.95765 * 359.97438 * 17 16 14 19 19 C 1.40397 * 121.17267 * 180.02562 * 18 17 16 20 20 C 1.36435 * 119.66613 * 179.97438 * 19 18 17 21 21 C 1.39044 * 120.95091 * 0.04945 * 20 19 18 22 22 C 1.36636 * 120.83668 * 359.94567 * 21 20 19 23 23 C 1.39738 * 119.64289 * 0.03019 * 22 21 20 24 24 H 0.97003 * 120.00211 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.99392 * 0.02562 * 12 11 9 26 26 H 0.96705 * 113.99710 * 269.72481 * 15 14 13 27 27 H 1.08002 * 119.09132 * 180.25057 * 16 14 13 28 28 H 1.07993 * 119.52006 * 179.97438 * 17 16 14 29 29 H 1.08007 * 120.16884 * 359.95145 * 19 18 17 30 30 H 1.08000 * 119.52837 * 180.02562 * 20 19 18 31 31 H 1.08000 * 119.57783 * 179.97438 * 21 20 19 32 32 H 1.07996 * 120.17729 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 3.0932 1.6964 -1.2125 5 1 1.2745 2.7464 0.0006 6 1 3.0933 1.6963 1.2124 7 6 2.0068 -1.2148 -0.0005 8 1 3.0868 -1.2148 -0.0010 9 6 1.2985 -2.4416 -0.0005 10 8 0.0779 -2.4416 -0.0005 11 7 1.9719 -3.6081 -0.0005 12 6 1.3143 -4.7474 0.0000 13 6 2.0209 -5.9714 0.0005 14 6 3.4274 -5.9907 0.0000 15 8 4.1177 -4.8258 -0.0005 16 6 4.1132 -7.2032 0.0063 17 6 3.4604 -8.3964 0.0075 18 6 2.0531 -8.4523 0.0029 19 6 1.3746 -9.6814 0.0046 20 6 0.0103 -9.6997 0.0006 21 6 -0.7206 -8.5169 -0.0063 22 6 -0.0909 -7.3043 -0.0081 23 6 1.3055 -7.2507 -0.0036 24 1 -0.4850 0.8401 0.0004 25 1 0.2343 -4.7473 0.0000 26 1 4.3215 -4.4898 -0.8842 27 1 5.1932 -7.1957 0.0099 28 1 4.0294 -9.3143 0.0120 29 1 1.9297 -10.6078 0.0088 30 1 -0.5093 -10.6464 0.0023 31 1 -1.7999 -8.5572 -0.0099 32 1 -0.6692 -6.3922 -0.0130 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000260668.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:15 Heat of formation + Delta-G solvation = -4.694591 kcal Electronic energy + Delta-G solvation = -19012.553835 eV Core-core repulsion = 15903.977835 eV Total energy + Delta-G solvation = -3108.576000 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.084 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19470 -38.02060 -37.34593 -34.89409 -34.13084 -32.78090 -31.54787 -29.76222 -28.73757 -27.11230 -24.45064 -23.03913 -22.56725 -20.89255 -18.76990 -18.32564 -17.36789 -16.63540 -16.09211 -15.57324 -15.41568 -14.49341 -14.35059 -14.17898 -13.78469 -13.38787 -13.30559 -13.02958 -12.78630 -12.71347 -12.26578 -11.49144 -11.27231 -11.19047 -10.95795 -10.85740 -10.81451 -10.46879 -10.28951 -10.10248 -9.18733 -8.88390 -8.55101 -8.38302 -7.63618 -7.37017 -6.49929 -4.97065 0.35545 1.13047 1.71613 2.68501 3.03603 3.07254 3.10738 3.24577 3.92199 4.18396 4.48183 4.56865 4.71813 4.87619 4.94464 5.11535 5.22267 5.30101 5.43475 5.52699 5.75411 5.90692 5.92878 6.05972 6.20687 6.25434 6.33392 6.52571 6.58865 6.70174 6.83994 7.02946 7.06299 7.12212 8.03222 8.20868 8.60551 8.65405 8.89854 10.22959 10.58214 Molecular weight = 269.08amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.004592 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.984209 B = 6095.546702 C = 6993.085274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.067 3.933 3 Si 0.920 3.080 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.451 3.549 10 O -0.590 6.590 11 N -0.488 5.488 12 C 0.162 3.838 13 C -0.077 4.077 14 C 0.154 3.846 15 O -0.463 6.463 16 C -0.141 4.141 17 C -0.091 4.091 18 C -0.064 4.064 19 C -0.105 4.105 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.104 4.104 23 C -0.018 4.018 24 H 0.277 0.723 25 H 0.103 0.897 26 H 0.391 0.609 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.695 -15.954 -1.667 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.157 4.157 3 Si 0.743 3.257 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.263 3.737 10 O -0.478 6.478 11 N -0.215 5.215 12 C -0.037 4.037 13 C -0.079 4.079 14 C 0.104 3.896 15 O -0.274 6.274 16 C -0.160 4.160 17 C -0.110 4.110 18 C -0.064 4.064 19 C -0.123 4.123 20 C -0.143 4.143 21 C -0.134 4.134 22 C -0.122 4.122 23 C -0.020 4.020 24 H 0.088 0.912 25 H 0.121 0.879 26 H 0.249 0.751 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.633 -15.313 -1.067 16.034 hybrid contribution -0.356 0.842 -0.439 1.014 sum 4.277 -14.471 -1.507 15.165 Atomic orbital electron populations 1.70002 1.07725 1.28560 1.28965 1.26115 0.94837 1.01521 0.93210 0.86203 0.79866 0.79486 0.80096 1.18689 1.20145 1.18668 1.20408 0.95290 0.89813 1.43218 0.90009 1.18192 0.87023 0.86886 0.81574 1.90680 1.15963 1.89000 1.52184 1.69792 1.43866 1.00439 1.07361 1.22721 0.97233 0.90667 0.93076 1.19524 0.92599 0.91785 1.03944 1.18845 0.88784 0.85898 0.96116 1.84696 1.73984 1.35872 1.32813 1.21047 1.00635 0.91855 1.02426 1.20863 0.92818 0.97707 0.99639 1.17952 0.93424 0.92721 1.02342 1.20992 0.94551 0.96402 1.00332 1.20807 0.94192 0.98156 1.01158 1.20906 1.00076 0.92243 1.00179 1.21105 0.93336 0.98793 0.98945 1.18874 0.93149 0.91223 0.98787 0.91205 0.87949 0.75077 0.85404 0.85564 0.85761 0.86229 0.85936 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -21.18 11.72 55.56 0.65 -20.52 16 2 C 0.07 1.85 5.50 -17.34 -0.10 1.76 16 3 Si 0.92 19.58 29.56 -169.99 -5.02 14.55 16 4 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -13.22 9.42 -37.51 -0.35 -13.57 16 8 H 0.08 2.21 7.85 -52.49 -0.41 1.80 16 9 C 0.45 13.67 7.50 -14.99 -0.11 13.56 16 10 O -0.59 -19.59 14.40 4.86 0.07 -19.52 16 11 N -0.49 -12.63 8.11 -14.14 -0.11 -12.75 16 12 C 0.16 3.68 9.69 -16.50 -0.16 3.52 16 13 C -0.08 -1.43 5.92 -104.44 -0.62 -2.05 16 14 C 0.15 2.59 6.73 -38.27 -0.26 2.34 16 15 O -0.46 -8.20 11.26 -17.91 -0.20 -8.40 16 16 C -0.14 -1.87 9.81 -39.99 -0.39 -2.26 16 17 C -0.09 -1.09 9.70 -39.40 -0.38 -1.47 16 18 C -0.06 -0.87 5.74 -106.85 -0.61 -1.48 16 19 C -0.10 -1.16 9.77 -39.42 -0.39 -1.55 16 20 C -0.13 -1.35 9.95 -39.93 -0.40 -1.74 16 21 C -0.12 -1.41 9.96 -39.86 -0.40 -1.80 16 22 C -0.10 -1.55 9.44 -39.60 -0.37 -1.92 16 23 C -0.02 -0.30 5.90 -104.73 -0.62 -0.91 16 24 H 0.28 7.20 8.29 -40.82 -0.34 6.86 16 25 H 0.10 2.40 5.61 -52.49 -0.29 2.10 16 26 H 0.39 5.63 9.06 45.56 0.41 6.04 16 27 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 28 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.13 2.04 6.41 -52.49 -0.34 1.70 16 LS Contribution 288.93 15.07 4.35 4.35 Total: -1.00 -35.86 288.93 -7.30 -43.16 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -1.88 Total: 6.72 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -5.16 Total: -7.59 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.54 Total: -33.27 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.13 Total: -27.93 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.86 -7.30 -43.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000260668.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.469 kcal (2) G-P(sol) polarization free energy of solvation -35.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds