Wall clock time and date at job start Mon Mar 30 2020 06:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99696 * 2 1 4 4 N 1.46503 * 109.47170 * 124.99774 * 3 2 1 5 5 C 1.46496 * 120.00104 * 262.09922 * 4 3 2 6 6 C 1.50694 * 109.47647 * 269.99937 * 5 4 3 7 7 H 1.08002 * 119.99706 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00642 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99693 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00307 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47458 * 89.99916 * 10 8 6 12 12 H 1.48500 * 109.47062 * 209.99775 * 10 8 6 13 13 H 1.48504 * 109.47024 * 329.99618 * 10 8 6 14 14 C 1.34778 * 119.99854 * 82.09918 * 4 3 2 15 15 O 1.21741 * 120.00222 * 182.21367 * 14 4 3 16 16 C 1.46288 * 120.00277 * 2.49131 * 14 4 3 17 17 S 1.75834 * 125.46330 * 351.46541 * 16 14 4 18 18 C 1.70599 * 91.60662 * 179.97438 * 17 16 14 19 19 C 1.33733 * 111.04193 * 0.02562 * 18 17 16 20 20 C 1.36924 * 125.47129 * 171.15760 * 16 14 4 21 21 F 1.35108 * 123.40092 * 0.02562 * 20 16 14 22 22 H 1.08001 * 120.00171 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.99972 * 180.02562 * 1 2 3 24 24 H 1.08001 * 120.00171 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47588 * 5.00055 * 3 2 1 26 26 H 1.09004 * 109.47184 * 244.99833 * 3 2 1 27 27 H 1.08999 * 109.46961 * 30.00350 * 5 4 3 28 28 H 1.09006 * 109.47044 * 149.99475 * 5 4 3 29 29 H 0.96997 * 119.99963 * 180.02562 * 9 8 6 30 30 H 1.07998 * 124.47706 * 179.97438 * 18 17 16 31 31 H 1.07996 * 122.45355 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.6206 2.0192 2.3703 6 6 3.0615 3.4584 2.2990 7 1 3.5693 3.8246 1.4189 8 6 2.8176 4.3075 3.3574 9 7 2.1997 3.8615 4.4293 10 14 3.3636 6.0917 3.2686 11 1 2.2754 6.9137 2.6809 12 1 3.6724 6.5835 4.6353 13 1 4.5770 6.1963 2.4189 14 6 4.1927 0.7245 1.0326 15 8 4.9493 0.7121 1.9863 16 6 4.5876 0.0853 -0.2226 17 16 3.5418 -0.1631 -1.6140 18 6 4.8013 -0.9124 -2.4873 19 6 5.9241 -0.9628 -1.7627 20 6 5.8325 -0.4102 -0.5046 21 9 6.8654 -0.3654 0.3652 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3585 2.1317 0.0896 26 1 2.6212 1.4027 -0.9314 27 1 1.5389 1.9764 2.4979 28 1 3.1057 1.5320 3.2163 29 1 2.0278 4.4590 5.1739 30 1 4.7043 -1.2962 -3.4922 31 1 6.8371 -1.4006 -2.1383 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359448564.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:19 Heat of formation + Delta-G solvation = -13.803438 kcal Electronic energy + Delta-G solvation = -18249.869395 eV Core-core repulsion = 15152.882052 eV Total energy + Delta-G solvation = -3096.987343 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 269.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.56902 -39.17881 -37.22552 -35.74237 -33.33517 -32.14934 -29.95145 -27.52615 -25.86494 -24.64436 -22.95920 -20.64110 -19.78956 -19.28551 -17.70180 -16.75734 -16.47687 -15.90230 -15.53026 -15.05282 -14.94058 -14.39895 -14.28331 -14.05405 -13.61946 -13.09382 -12.67560 -12.59014 -12.28458 -11.98749 -11.71141 -11.33089 -11.14221 -10.97568 -10.67556 -10.48659 -10.19679 -9.70602 -9.42760 -9.20717 -8.79129 -8.45983 -8.25860 -7.77377 -6.06867 -4.12138 0.53366 1.43998 1.89600 2.26900 2.37651 3.29265 3.36457 3.40827 3.66584 3.87448 4.39887 4.44103 4.83385 5.01576 5.08929 5.25233 5.28249 5.32078 5.41435 5.69871 5.87395 5.90591 6.01971 6.40851 6.65992 6.77264 6.98812 7.37858 7.44528 7.88977 8.17984 8.23552 8.81800 8.96943 9.53054 11.01256 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.020278 B = 0.006681 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.473045 B = 4189.991319 C = 4986.015095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.182 4.182 3 C 0.126 3.874 4 N -0.586 5.586 5 C 0.249 3.751 6 C -0.531 4.531 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.577 3.423 15 O -0.518 6.518 16 C -0.302 4.302 17 S 0.285 5.715 18 C -0.262 4.262 19 C -0.177 4.177 20 C 0.147 3.853 21 F -0.107 7.107 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.264 0.736 30 H 0.169 0.831 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 -9.555 -15.638 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.203 4.203 3 C 0.000 4.000 4 N -0.316 5.316 5 C 0.130 3.870 6 C -0.569 4.569 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.363 3.637 15 O -0.395 6.395 16 C -0.424 4.424 17 S 0.553 5.447 18 C -0.399 4.399 19 C -0.209 4.209 20 C 0.113 3.887 21 F -0.086 7.086 22 H 0.120 0.880 23 H 0.117 0.883 24 H 0.130 0.870 25 H 0.124 0.876 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.187 0.813 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.503 -9.165 -15.232 17.952 hybrid contribution 2.074 0.566 0.275 2.167 sum -0.429 -8.599 -14.957 17.258 Atomic orbital electron populations 1.23846 0.95459 1.02099 0.99172 1.23479 0.96747 0.98787 1.01270 1.20897 0.93341 0.96626 0.89126 1.48115 1.14192 1.52688 1.16629 1.19374 0.96168 0.91473 0.79960 1.21432 1.38407 0.94457 1.02644 0.92325 1.24924 0.95007 0.99032 0.94995 1.69932 1.41403 1.35932 1.05910 0.86484 0.79030 0.84384 0.77483 1.20578 1.21020 1.19838 1.16692 0.82564 0.79063 0.85387 1.90859 1.51164 1.59755 1.37742 1.25076 0.98765 1.15878 1.02644 1.84018 1.08966 1.50125 1.01569 1.25800 1.01044 1.06754 1.06254 1.19736 1.01230 1.06589 0.93358 1.16878 0.84043 0.99419 0.88343 1.91561 1.55272 1.93886 1.67856 0.88006 0.88328 0.86962 0.87591 0.90737 0.94517 0.93434 0.92632 0.81341 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 14.32 29.01 0.42 -1.51 16 2 C -0.18 -2.45 7.92 -36.03 -0.29 -2.73 16 3 C 0.13 2.03 5.43 -5.19 -0.03 2.00 16 4 N -0.59 -12.70 2.47 -178.12 -0.44 -13.14 16 5 C 0.25 6.51 5.14 -5.20 -0.03 6.49 16 6 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 10 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.58 13.05 7.55 -13.02 -0.10 12.95 16 15 O -0.52 -14.06 15.74 5.15 0.08 -13.98 16 16 C -0.30 -5.36 6.23 -36.82 -0.23 -5.59 16 17 S 0.28 3.40 15.58 -107.50 -1.67 1.72 16 18 C -0.26 -2.73 10.91 29.15 0.32 -2.41 16 19 C -0.18 -2.23 10.15 -41.35 -0.42 -2.65 16 20 C 0.15 2.50 7.47 -40.25 -0.30 2.20 16 21 F -0.11 -2.08 16.46 2.25 0.04 -2.04 16 22 H 0.10 1.13 7.84 -52.49 -0.41 0.71 16 23 H 0.10 0.95 8.06 -52.49 -0.42 0.52 16 24 H 0.11 1.46 6.90 -52.49 -0.36 1.10 16 25 H 0.11 1.69 7.66 -51.93 -0.40 1.29 16 26 H 0.08 1.07 4.49 -22.28 -0.10 0.97 16 27 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 28 H 0.05 1.41 7.39 -51.93 -0.38 1.03 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 287.01 15.07 4.33 4.33 Total: -1.00 -33.64 287.01 -5.92 -39.55 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -2.89 Total: -2.65 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -1.08 Total: -4.94 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.30 Total: -38.84 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.08 Total: -13.98 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.67 Total: 1.72 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.64 -5.92 -39.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359448564.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.751 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds