Wall clock time and date at job start Mon Mar 30 2020 06:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35748 * 117.00047 * 2 1 4 4 C 1.38502 * 119.45229 * 0.24720 * 3 2 1 5 5 C 1.39372 * 120.04033 * 180.26867 * 4 3 2 6 6 C 1.43203 * 120.49594 * 179.75927 * 5 4 3 7 7 N 5.83825 * 80.82141 * 359.97438 * 2 1 3 8 8 C 1.46635 * 119.01093 * 359.74413 * 5 4 3 9 9 C 1.40617 * 120.52490 * 179.97438 * 8 5 4 10 10 H 1.08000 * 119.99975 * 24.72949 * 9 8 5 11 11 C 1.40179 * 120.00077 * 204.73603 * 9 8 5 12 12 N 1.30705 * 120.00395 * 17.59719 * 11 9 8 13 13 Si 1.86805 * 120.00158 * 197.60249 * 11 9 8 14 14 H 1.48496 * 109.47437 * 89.99321 * 13 11 9 15 15 H 1.48501 * 109.47100 * 209.99851 * 13 11 9 16 16 H 1.48500 * 109.46652 * 329.99480 * 13 11 9 17 17 C 1.40806 * 118.95163 * 359.97438 * 8 5 4 18 18 C 1.37698 * 119.88130 * 359.97438 * 17 8 5 19 19 O 1.35850 * 119.49382 * 179.97438 * 18 17 8 20 20 C 1.42905 * 116.99476 * 0.02562 * 19 18 17 21 21 F 1.39895 * 109.47457 * 59.99906 * 20 19 18 22 22 F 1.39898 * 109.47194 * 299.99484 * 20 19 18 23 23 H 1.08997 * 109.47218 * 59.99759 * 1 2 3 24 24 H 1.09002 * 109.47133 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46744 * 299.99650 * 1 2 3 26 26 H 1.08004 * 119.98441 * 0.03163 * 4 3 2 27 27 H 0.97002 * 120.00847 * 184.44858 * 12 11 9 28 28 H 1.08007 * 120.05808 * 180.02562 * 17 8 5 29 29 H 1.09002 * 109.46844 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2800 2.3638 0.0052 5 6 1.8999 3.6121 -0.0004 6 6 1.1180 4.8118 -0.0003 7 7 0.4978 5.7635 -0.0026 8 6 3.3647 3.6786 -0.0061 9 6 4.0233 4.9210 -0.0123 10 1 3.5270 5.7972 0.3781 11 6 5.3238 5.0224 -0.5255 12 7 5.7970 4.0800 -1.2977 13 14 6.3808 6.5042 -0.1055 14 1 7.1565 6.2250 1.1296 15 1 7.3159 6.7788 -1.2260 16 1 5.5101 7.6870 0.1137 17 6 4.1015 2.4787 -0.0051 18 6 3.4431 1.2693 0.0016 19 8 4.1617 0.1165 0.0019 20 6 5.5854 0.2396 -0.0043 21 9 5.9980 0.9401 1.1342 22 9 5.9885 0.9335 -1.1503 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2020 2.2967 0.0097 27 1 6.7179 4.1175 -1.6004 28 1 5.1812 2.5068 -0.0088 29 1 6.0359 -0.7529 -0.0029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575640310.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:07 Heat of formation + Delta-G solvation = -136.746724 kcal Electronic energy + Delta-G solvation = -20556.999323 eV Core-core repulsion = 16888.467582 eV Total energy + Delta-G solvation = -3668.531740 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.065 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.65084 -46.63746 -39.31453 -37.51709 -36.49491 -34.93058 -33.55074 -29.68205 -29.52867 -27.03993 -25.64852 -25.16309 -21.98955 -21.29548 -18.62193 -18.31275 -17.42964 -17.20875 -16.91480 -15.54192 -15.50592 -15.24997 -14.99917 -14.09592 -13.68501 -13.26768 -13.13893 -13.11880 -12.95812 -12.90648 -12.56982 -12.46400 -12.11479 -11.84874 -11.63708 -11.49230 -11.14195 -11.03599 -10.83269 -10.78292 -10.22103 -10.03773 -9.88631 -9.26914 -7.75240 -7.29324 -6.97167 -4.68342 1.99291 2.53810 2.93721 2.98412 3.02350 3.28811 3.71298 3.85746 4.00013 4.09535 4.17796 4.42765 4.88987 5.19438 5.31041 5.36977 5.59892 5.65466 5.73144 5.91981 6.18245 6.43496 6.63418 6.77165 6.90459 7.15647 7.44218 7.48274 7.73869 8.06368 8.27835 8.40361 8.55014 8.77761 9.76512 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.010016 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.445263 B = 2794.855258 C = 4459.950767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.320 6.320 3 C -0.021 4.021 4 C -0.082 4.082 5 C -0.180 4.180 6 C 0.302 3.698 7 N -0.507 5.507 8 C 0.156 3.844 9 C -0.425 4.425 10 H 0.088 0.912 11 C 0.075 3.925 12 N -0.753 5.753 13 Si 0.913 3.087 14 H -0.261 1.261 15 H -0.272 1.272 16 H -0.257 1.257 17 C -0.211 4.211 18 C 0.126 3.874 19 O -0.322 6.322 20 C 0.409 3.591 21 F -0.204 7.204 22 F -0.189 7.189 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.044 0.956 26 H 0.116 0.884 27 H 0.292 0.708 28 H 0.154 0.846 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.289 -8.418 1.427 8.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.235 6.235 3 C -0.065 4.065 4 C -0.104 4.104 5 C -0.186 4.186 6 C -0.007 4.007 7 N -0.186 5.186 8 C 0.151 3.849 9 C -0.452 4.452 10 H 0.106 0.894 11 C -0.149 4.149 12 N -0.375 5.375 13 Si 0.736 3.264 14 H -0.186 1.186 15 H -0.197 1.197 16 H -0.181 1.181 17 C -0.231 4.231 18 C 0.083 3.917 19 O -0.240 6.240 20 C 0.318 3.682 21 F -0.186 7.186 22 F -0.170 7.170 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.062 0.938 26 H 0.134 0.866 27 H 0.103 0.897 28 H 0.171 0.829 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.556 -7.327 1.213 7.588 hybrid contribution 0.753 0.607 0.072 0.970 sum 2.309 -6.719 1.285 7.220 Atomic orbital electron populations 1.22784 0.80734 1.02187 1.00448 1.85946 1.19125 1.26977 1.91490 1.17281 0.87980 0.83968 1.17245 1.20360 0.97565 0.90354 1.02105 1.16601 0.91178 0.85784 1.25029 1.25595 0.91475 0.92411 0.91221 1.81025 1.11457 1.10947 1.15181 1.18107 0.87685 0.92857 0.86283 1.19671 0.98240 0.95471 1.31853 0.89408 1.26106 0.98336 0.98458 0.91996 1.69733 1.16529 1.31841 1.19386 0.86180 0.79579 0.81189 0.79424 1.18603 1.19722 1.18098 1.21629 1.01185 0.89348 1.10889 1.18109 0.87634 0.84384 1.01594 1.86531 1.16563 1.31953 1.88972 1.23100 0.80899 0.91714 0.72442 1.93067 1.90271 1.82610 1.52658 1.93154 1.90311 1.82499 1.51078 0.93730 0.89661 0.93754 0.86629 0.89674 0.82889 0.81864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.79 101.05 0.99 1.48 15 2 O -0.32 -6.20 10.22 -34.45 -0.35 -6.55 15 3 C -0.02 -0.44 6.71 -38.86 -0.26 -0.70 15 4 C -0.08 -1.73 8.72 -39.06 -0.34 -2.07 15 5 C -0.18 -4.19 5.94 -104.16 -0.62 -4.81 15 6 C 0.30 7.13 14.29 -22.47 -0.32 6.81 15 7 N -0.51 -12.20 18.54 41.84 0.78 -11.43 15 8 C 0.16 3.88 5.73 -104.64 -0.60 3.28 15 9 C -0.43 -10.54 8.56 -37.96 -0.32 -10.87 15 10 H 0.09 2.19 7.37 -52.49 -0.39 1.80 15 11 C 0.07 1.72 5.15 -17.30 -0.09 1.63 15 12 N -0.75 -17.59 10.96 55.56 0.61 -16.98 15 13 Si 0.91 17.49 29.60 -169.99 -5.03 12.46 15 14 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 15 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 16 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 17 C -0.21 -5.02 6.86 -38.81 -0.27 -5.29 15 18 C 0.13 2.84 6.49 -39.16 -0.25 2.58 15 19 O -0.32 -6.36 10.16 -34.77 -0.35 -6.72 15 20 C 0.41 6.65 5.98 101.05 0.60 7.25 15 21 F -0.20 -3.67 15.55 2.25 0.04 -3.63 15 22 F -0.19 -3.54 15.55 2.25 0.04 -3.50 15 23 H 0.04 0.61 7.64 -51.93 -0.40 0.21 15 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.04 0.59 7.61 -51.93 -0.40 0.20 15 26 H 0.12 2.10 6.20 -52.48 -0.33 1.78 15 27 H 0.29 6.17 8.30 -40.82 -0.34 5.83 15 28 H 0.15 3.65 3.11 -52.48 -0.16 3.49 15 29 H 0.16 1.66 8.14 -51.93 -0.42 1.23 15 LS Contribution 272.63 15.07 4.11 4.11 Total: -1.00 -28.35 272.63 -3.30 -31.66 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -1.65 Total: 1.29 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.48 Total: -0.70 kcal Atomic # 7 Polarization: -29.79 SS G_CDS: 1.38 Total: -28.41 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.71 Total: -13.27 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.07 Total: -7.13 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.35 -3.30 -31.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575640310.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.090 kcal (2) G-P(sol) polarization free energy of solvation -28.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds