Wall clock time and date at job start Mon Mar 30 2020 06:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35748 * 117.00047 * 2 1 4 4 C 1.38502 * 119.45229 * 0.24720 * 3 2 1 5 5 C 1.39372 * 120.04033 * 180.26867 * 4 3 2 6 6 C 1.43203 * 120.49594 * 179.75927 * 5 4 3 7 7 N 5.83825 * 80.82141 * 359.97438 * 2 1 3 8 8 C 1.46635 * 119.01093 * 359.74413 * 5 4 3 9 9 C 1.40617 * 120.52490 * 179.97438 * 8 5 4 10 10 H 1.08000 * 119.99975 * 24.72949 * 9 8 5 11 11 C 1.40179 * 120.00077 * 204.73603 * 9 8 5 12 12 N 1.30705 * 120.00395 * 17.59719 * 11 9 8 13 13 Si 1.86805 * 120.00158 * 197.60249 * 11 9 8 14 14 H 1.48496 * 109.47437 * 89.99321 * 13 11 9 15 15 H 1.48501 * 109.47100 * 209.99851 * 13 11 9 16 16 H 1.48500 * 109.46652 * 329.99480 * 13 11 9 17 17 C 1.40806 * 118.95163 * 359.97438 * 8 5 4 18 18 C 1.37698 * 119.88130 * 359.97438 * 17 8 5 19 19 O 1.35850 * 119.49382 * 179.97438 * 18 17 8 20 20 C 1.42905 * 116.99476 * 0.02562 * 19 18 17 21 21 F 1.39895 * 109.47457 * 59.99906 * 20 19 18 22 22 F 1.39898 * 109.47194 * 299.99484 * 20 19 18 23 23 H 1.08997 * 109.47218 * 59.99759 * 1 2 3 24 24 H 1.09002 * 109.47133 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46744 * 299.99650 * 1 2 3 26 26 H 1.08004 * 119.98441 * 0.03163 * 4 3 2 27 27 H 0.97002 * 120.00847 * 184.44858 * 12 11 9 28 28 H 1.08007 * 120.05808 * 180.02562 * 17 8 5 29 29 H 1.09002 * 109.46844 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2800 2.3638 0.0052 5 6 1.8999 3.6121 -0.0004 6 6 1.1180 4.8118 -0.0003 7 7 0.4978 5.7635 -0.0026 8 6 3.3647 3.6786 -0.0061 9 6 4.0233 4.9210 -0.0123 10 1 3.5270 5.7972 0.3781 11 6 5.3238 5.0224 -0.5255 12 7 5.7970 4.0800 -1.2977 13 14 6.3808 6.5042 -0.1055 14 1 7.1565 6.2250 1.1296 15 1 7.3159 6.7788 -1.2260 16 1 5.5101 7.6870 0.1137 17 6 4.1015 2.4787 -0.0051 18 6 3.4431 1.2693 0.0016 19 8 4.1617 0.1165 0.0019 20 6 5.5854 0.2396 -0.0043 21 9 5.9980 0.9401 1.1342 22 9 5.9885 0.9335 -1.1503 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2020 2.2967 0.0097 27 1 6.7179 4.1175 -1.6004 28 1 5.1812 2.5068 -0.0088 29 1 6.0359 -0.7529 -0.0029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575640310.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:06 Heat of formation + Delta-G solvation = -153.296588 kcal Electronic energy + Delta-G solvation = -20557.716978 eV Core-core repulsion = 16888.467582 eV Total energy + Delta-G solvation = -3669.249396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.065 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.01960 -48.02347 -40.91555 -39.00975 -38.21184 -36.75682 -35.26529 -31.35911 -31.24807 -28.43091 -27.05171 -26.79717 -23.63094 -22.95919 -20.22591 -19.89449 -19.05042 -18.59673 -18.41691 -17.14747 -17.06678 -16.83830 -16.40113 -15.69790 -15.12517 -14.84953 -14.75195 -14.61927 -14.44256 -14.40625 -14.28854 -14.10104 -13.74621 -13.43119 -13.37212 -13.02228 -12.71532 -12.52368 -12.36996 -12.22436 -11.87999 -11.68654 -11.52956 -10.94448 -9.48459 -9.01632 -8.67879 -6.49644 0.21701 0.84644 1.36317 1.47617 1.48648 1.92234 1.99207 2.13265 2.22700 2.62314 2.76021 2.82865 3.46150 3.54656 3.74509 3.94867 4.14739 4.49411 4.53567 4.56466 4.74549 4.84781 4.91740 5.04528 5.19502 5.41280 5.67635 5.79190 6.02569 6.28937 6.53980 6.61865 6.87922 6.95889 8.07280 Molecular weight = 269.06amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.010016 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.445263 B = 2794.855258 C = 4459.950767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.332 6.332 3 C -0.018 4.018 4 C -0.077 4.077 5 C -0.198 4.198 6 C 0.308 3.692 7 N -0.522 5.522 8 C 0.133 3.867 9 C -0.457 4.457 10 H 0.074 0.926 11 C 0.043 3.957 12 N -0.774 5.774 13 Si 0.976 3.024 14 H -0.253 1.253 15 H -0.259 1.259 16 H -0.266 1.266 17 C -0.228 4.228 18 C 0.122 3.878 19 O -0.327 6.327 20 C 0.400 3.600 21 F -0.216 7.216 22 F -0.205 7.205 23 H 0.052 0.948 24 H 0.119 0.881 25 H 0.054 0.946 26 H 0.145 0.855 27 H 0.301 0.699 28 H 0.150 0.850 29 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 -9.671 1.518 10.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.248 6.248 3 C -0.063 4.063 4 C -0.098 4.098 5 C -0.205 4.205 6 C 0.000 4.000 7 N -0.202 5.202 8 C 0.127 3.873 9 C -0.484 4.484 10 H 0.092 0.908 11 C -0.179 4.179 12 N -0.397 5.397 13 Si 0.796 3.204 14 H -0.177 1.177 15 H -0.183 1.183 16 H -0.191 1.191 17 C -0.247 4.247 18 C 0.077 3.923 19 O -0.244 6.244 20 C 0.311 3.689 21 F -0.198 7.198 22 F -0.187 7.187 23 H 0.070 0.930 24 H 0.137 0.863 25 H 0.073 0.927 26 H 0.162 0.838 27 H 0.112 0.888 28 H 0.167 0.833 29 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.709 -8.606 1.300 8.870 hybrid contribution 0.629 0.822 0.034 1.036 sum 2.338 -7.785 1.334 8.237 Atomic orbital electron populations 1.23168 0.77954 1.04816 1.01253 1.85936 1.21956 1.25661 1.91204 1.17446 0.88101 0.84951 1.15756 1.20604 0.99026 0.89314 1.00870 1.16767 0.90902 0.86546 1.26242 1.25694 0.91161 0.92361 0.90804 1.81006 1.12093 1.11109 1.16027 1.18419 0.88601 0.93428 0.86811 1.19764 0.99737 0.95218 1.33688 0.90756 1.26777 0.98705 1.00946 0.91438 1.69740 1.17259 1.33137 1.19538 0.85260 0.77900 0.77453 0.79750 1.17743 1.18307 1.19061 1.21614 1.01143 0.89731 1.12254 1.18297 0.88631 0.84793 1.00551 1.86523 1.18468 1.30801 1.88634 1.24243 0.79443 0.94007 0.71249 1.93038 1.90172 1.83289 1.53307 1.93117 1.90263 1.83274 1.52059 0.92983 0.86297 0.92747 0.83784 0.88771 0.83290 0.75064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.79 113.37 1.11 1.69 15 2 O -0.33 -12.10 10.22 -75.91 -0.78 -12.88 15 3 C -0.02 -0.75 6.71 22.74 0.15 -0.60 15 4 C -0.08 -3.16 8.72 22.61 0.20 -2.96 15 5 C -0.20 -9.32 5.94 -19.57 -0.12 -9.44 15 6 C 0.31 14.67 14.29 88.33 1.26 15.93 15 7 N -0.52 -25.27 18.54 19.00 0.35 -24.92 15 8 C 0.13 6.74 5.73 -19.88 -0.11 6.62 15 9 C -0.46 -23.28 8.56 23.32 0.20 -23.08 15 10 H 0.07 3.85 7.37 -2.91 -0.02 3.83 15 11 C 0.04 2.00 5.15 85.33 0.44 2.44 15 12 N -0.77 -36.45 10.96 21.87 0.24 -36.21 15 13 Si 0.98 35.91 29.60 68.60 2.03 37.94 15 14 H -0.25 -8.91 7.11 99.48 0.71 -8.21 15 15 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 16 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 17 C -0.23 -10.96 6.86 22.77 0.16 -10.80 15 18 C 0.12 5.40 6.49 22.54 0.15 5.54 15 19 O -0.33 -12.42 10.16 -77.04 -0.78 -13.20 15 20 C 0.40 12.25 5.98 113.37 0.68 12.93 15 21 F -0.22 -7.57 15.55 44.97 0.70 -6.87 15 22 F -0.21 -7.53 15.55 44.97 0.70 -6.83 15 23 H 0.05 1.26 7.64 -2.39 -0.02 1.24 15 24 H 0.12 2.23 8.14 -2.39 -0.02 2.21 15 25 H 0.05 1.29 7.61 -2.39 -0.02 1.27 15 26 H 0.14 4.94 6.20 -2.91 -0.02 4.92 15 27 H 0.30 12.68 8.30 -92.71 -0.77 11.91 15 28 H 0.15 7.20 3.11 -2.91 -0.01 7.19 15 29 H 0.23 3.79 8.14 -2.39 -0.02 3.77 15 Total: -1.00 -61.92 272.63 7.80 -54.12 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.23 Total: 10.57 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 4.11 Total: -1.72 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: 0.59 Total: -61.13 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -1.56 Total: -26.08 kcal Atomic # 9 Polarization: -15.10 SS G_CDS: 1.40 Total: -13.70 kcal Atomic # 14 Polarization: 35.91 SS G_CDS: 2.03 Total: 37.94 kcal Total: -61.92 7.80 -54.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575640310.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.178 kcal (2) G-P(sol) polarization free energy of solvation -61.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds