Wall clock time and date at job start Mon Mar 30 2020 06:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46911 * 2 1 4 4 N 1.46895 * 109.47253 * 61.11242 * 3 2 1 5 5 C 1.50696 * 109.46780 * 181.11287 * 3 2 1 6 6 H 1.08000 * 119.99885 * 120.00113 * 5 3 2 7 7 C 1.37881 * 120.00399 * 299.99923 * 5 3 2 8 8 N 1.31510 * 119.99446 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00117 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47275 * 60.00145 * 9 7 5 11 11 H 1.48499 * 109.46956 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47167 * 299.99942 * 9 7 5 13 13 C 1.50700 * 109.47267 * 301.11034 * 3 2 1 14 14 C 1.38167 * 120.02073 * 117.14686 * 13 3 2 15 15 C 1.38341 * 120.04372 * 180.02562 * 14 13 3 16 16 Cl 1.73600 * 119.95553 * 180.02562 * 15 14 13 17 17 C 1.38386 * 120.08855 * 359.97438 * 15 14 13 18 18 C 1.38121 * 120.03622 * 0.02562 * 17 15 14 19 19 C 1.38703 * 120.02412 * 297.42981 * 13 3 2 20 20 O 1.35920 * 120.04349 * 359.97438 * 19 13 3 21 21 C 1.42901 * 116.99936 * 180.25427 * 20 19 13 22 22 H 1.08990 * 109.47672 * 57.03613 * 1 2 3 23 23 H 1.09003 * 109.47237 * 177.04064 * 1 2 3 24 24 H 1.08999 * 109.46535 * 297.03434 * 1 2 3 25 25 H 1.09004 * 109.46474 * 240.00213 * 2 1 3 26 26 H 1.08993 * 109.47284 * 120.00729 * 2 1 3 27 27 H 1.00892 * 111.00296 * 179.97438 * 4 3 2 28 28 H 1.00896 * 111.00077 * 303.95773 * 4 3 2 29 29 H 0.97001 * 119.99865 * 179.97438 * 8 7 5 30 30 H 1.08008 * 119.97715 * 0.02562 * 14 13 3 31 31 H 1.07992 * 119.98009 * 179.97438 * 17 15 14 32 32 H 1.08004 * 120.01702 * 179.97438 * 18 17 15 33 33 H 1.09000 * 109.46530 * 179.97438 * 21 20 19 34 34 H 1.08993 * 109.47197 * 299.99995 * 21 20 19 35 35 H 1.08998 * 109.47170 * 60.00099 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5724 2.1272 1.2126 5 6 3.5467 1.4426 -0.0276 6 1 4.0718 1.9155 -0.8443 7 6 4.2550 0.8389 0.9898 8 7 3.6155 0.2627 1.9840 9 14 6.1226 0.8397 0.9559 10 1 6.6172 2.2399 0.9563 11 1 6.6397 0.1323 2.1548 12 1 6.5957 0.1479 -0.2700 13 6 1.5153 2.1609 -1.2165 14 6 0.6755 3.2480 -1.0686 15 6 0.1931 3.9074 -2.1850 16 17 -0.8614 5.2735 -1.9966 17 6 0.5509 3.4802 -3.4517 18 6 1.3903 2.3938 -3.6035 19 6 1.8704 1.7275 -2.4853 20 8 2.6923 0.6550 -2.6329 21 6 3.0203 0.2681 -3.9688 22 1 -0.3634 0.5591 -0.8621 23 1 -0.3634 -1.0263 -0.0531 24 1 -0.3632 0.4671 0.9154 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 1.8966 3.0823 1.2364 28 1 0.5671 2.0843 1.2872 29 1 4.1137 -0.1624 2.6996 30 1 0.3954 3.5832 -0.0808 31 1 0.1730 3.9960 -4.3220 32 1 1.6690 2.0604 -4.5923 33 1 3.6813 -0.5983 -3.9441 34 1 2.1078 0.0141 -4.5080 35 1 3.5226 1.0936 -4.4732 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084425521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:00 Heat of formation + Delta-G solvation = -11.853852 kcal Electronic energy + Delta-G solvation = -19400.617193 eV Core-core repulsion = 16425.130989 eV Total energy + Delta-G solvation = -2975.486204 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93935 -37.28340 -36.34013 -35.31459 -31.83265 -30.33037 -29.53094 -29.18589 -26.74659 -26.21914 -23.20388 -21.80923 -21.48180 -18.97276 -17.55061 -16.51120 -15.77381 -15.54814 -15.15628 -14.56411 -14.34639 -13.96612 -13.56145 -13.42725 -12.98121 -12.52910 -12.47131 -11.98376 -11.89064 -11.47168 -11.41944 -11.05193 -10.90652 -10.81182 -10.66003 -10.44386 -10.29290 -10.04366 -9.59498 -9.43355 -9.03258 -8.38739 -8.24520 -7.43126 -7.10129 -5.76984 -3.91024 1.69297 1.77655 2.51526 3.38374 3.43173 3.46044 3.85798 4.13114 4.54619 5.10214 5.16619 5.37575 5.43322 5.46844 5.61584 5.79306 5.83332 5.96849 6.15754 6.25740 6.32205 6.38584 6.51787 6.53513 6.70590 6.78757 6.97515 7.12906 7.34562 7.52194 7.91023 7.96644 8.08985 8.41215 8.71272 9.02371 9.20013 9.74432 11.23068 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.007460 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.178383 B = 3752.480475 C = 4168.129588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.101 4.101 3 C 0.294 3.706 4 N -0.808 5.808 5 C -0.505 4.505 6 H 0.051 0.949 7 C 0.086 3.914 8 N -0.847 5.847 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.280 1.280 13 C -0.080 4.080 14 C -0.097 4.097 15 C -0.070 4.070 16 Cl -0.094 7.094 17 C -0.098 4.098 18 C -0.209 4.209 19 C 0.146 3.854 20 O -0.271 6.271 21 C 0.022 3.978 22 H 0.032 0.968 23 H 0.033 0.967 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.101 0.899 27 H 0.319 0.681 28 H 0.299 0.701 29 H 0.254 0.746 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.701 2.820 -9.774 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.139 4.139 3 C 0.202 3.798 4 N -0.336 5.336 5 C -0.544 4.544 6 H 0.069 0.931 7 C -0.120 4.120 8 N -0.482 5.482 9 Si 0.709 3.291 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.206 1.206 13 C -0.084 4.084 14 C -0.116 4.116 15 C -0.096 4.096 16 Cl -0.065 7.065 17 C -0.117 4.117 18 C -0.228 4.228 19 C 0.099 3.901 20 O -0.183 6.183 21 C -0.074 4.074 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.114 0.886 34 H 0.064 0.936 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.253 2.145 -8.996 10.635 hybrid contribution 0.396 0.954 -1.116 1.520 sum -4.857 3.099 -10.111 11.637 Atomic orbital electron populations 1.21935 0.99918 0.99279 0.99879 1.21564 0.90768 0.98187 1.03429 1.17405 0.94118 0.89240 0.79054 1.59113 1.12178 1.19563 1.42725 1.20617 0.88568 1.37734 1.07447 0.93070 1.24840 0.97055 0.94820 0.95272 1.70001 1.34034 1.34539 1.09625 0.86874 0.87122 0.77961 0.77093 1.20621 1.21521 1.20562 1.21183 0.95125 0.95424 0.96659 1.20786 0.97607 0.95515 0.97729 1.20667 1.00479 0.93423 0.95044 1.98313 1.65803 1.44422 1.97997 1.20520 0.98738 0.97082 0.95336 1.21117 1.04007 0.99636 0.98079 1.18949 0.90352 0.87617 0.93211 1.86517 1.61573 1.43367 1.26815 1.23020 1.00021 1.00570 0.83812 0.94928 0.94785 0.93380 0.93226 0.88052 0.86812 0.88785 0.93608 0.85148 0.85918 0.85543 0.88619 0.93553 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.32 37.16 0.35 -2.65 16 2 C -0.10 -2.33 4.75 -26.73 -0.13 -2.46 16 3 C 0.29 6.76 0.32 -133.91 -0.04 6.72 16 4 N -0.81 -18.07 7.46 -1.14 -0.01 -18.08 16 5 C -0.50 -13.22 7.01 -34.44 -0.24 -13.46 16 6 H 0.05 1.39 7.35 -52.49 -0.39 1.00 16 7 C 0.09 2.30 5.23 -17.82 -0.09 2.20 16 8 N -0.85 -23.31 10.81 55.43 0.60 -22.71 16 9 Si 0.88 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C -0.08 -1.65 3.37 -104.48 -0.35 -2.00 16 14 C -0.10 -1.79 8.82 -39.57 -0.35 -2.14 16 15 C -0.07 -1.16 6.32 -39.49 -0.25 -1.41 16 16 Cl -0.09 -1.37 28.95 -51.86 -1.50 -2.88 16 17 C -0.10 -1.52 9.82 -39.57 -0.39 -1.91 16 18 C -0.21 -3.36 9.04 -39.44 -0.36 -3.72 16 19 C 0.15 2.80 6.14 -39.22 -0.24 2.56 16 20 O -0.27 -5.26 7.15 -19.49 -0.14 -5.40 16 21 C 0.02 0.30 9.81 101.05 0.99 1.29 16 22 H 0.03 0.62 7.08 -51.93 -0.37 0.25 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.92 6.74 -51.93 -0.35 0.57 16 25 H 0.05 1.16 6.38 -51.93 -0.33 0.83 16 26 H 0.10 2.65 6.10 -51.93 -0.32 2.34 16 27 H 0.32 6.98 8.18 -39.30 -0.32 6.66 16 28 H 0.30 6.07 6.27 -39.29 -0.25 5.82 16 29 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.13 2.30 6.20 -52.48 -0.33 1.97 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.13 1.66 6.30 -52.48 -0.33 1.33 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 35 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -28.07 293.76 -6.92 -34.99 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -4.17 Total: 10.59 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -1.10 Total: -16.98 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.59 Total: -40.79 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.14 Total: -5.40 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.50 Total: -2.88 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.07 -6.92 -34.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084425521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.133 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds