Wall clock time and date at job start Mon Mar 30 2020 07:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.36830 * 125.02954 * 2 1 4 4 H 0.96993 * 125.06870 * 359.96976 * 3 2 1 5 5 C 1.37690 * 109.86943 * 180.02562 * 3 2 1 6 6 C 1.39128 * 133.50373 * 180.02562 * 5 3 2 7 7 C 1.37746 * 119.77708 * 179.97438 * 6 5 3 8 8 C 1.38826 * 120.66723 * 359.97438 * 7 6 5 9 9 C 1.36620 * 120.53189 * 0.02562 * 8 7 6 10 10 C 1.39636 * 119.76046 * 359.97438 * 9 8 7 11 11 C 1.34235 * 125.03646 * 180.02562 * 2 1 3 12 12 C 1.50702 * 126.50218 * 359.73420 * 11 2 1 13 13 H 1.09000 * 115.54860 * 280.19225 * 12 11 2 14 14 C 1.53001 * 117.49495 * 134.52039 * 12 11 2 15 15 H 1.08997 * 117.49457 * 145.02757 * 14 12 11 16 16 C 1.50695 * 117.50229 * 359.97438 * 14 12 11 17 17 H 1.08004 * 120.00170 * 325.41098 * 16 14 12 18 18 C 1.37880 * 119.99849 * 145.41195 * 16 14 12 19 19 N 1.31506 * 120.00020 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99656 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47045 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46692 * 119.99995 * 20 18 16 23 23 H 1.48500 * 109.47021 * 239.99970 * 20 18 16 24 24 C 1.52998 * 117.49459 * 65.86186 * 12 11 2 25 25 C 1.53000 * 117.49495 * 214.97783 * 24 12 11 26 26 C 1.52999 * 117.50266 * 359.97438 * 24 12 11 27 27 H 1.09000 * 109.47001 * 275.71518 * 1 2 3 28 28 H 1.08994 * 109.47538 * 35.71720 * 1 2 3 29 29 H 1.09005 * 109.46838 * 155.71611 * 1 2 3 30 30 H 1.08003 * 120.10908 * 359.96888 * 6 5 3 31 31 H 1.08005 * 119.66316 * 179.97438 * 7 6 5 32 32 H 1.08005 * 119.73234 * 179.97438 * 8 7 6 33 33 H 1.07999 * 120.12279 * 179.97438 * 9 8 7 34 34 H 0.97001 * 119.99624 * 180.02562 * 19 18 16 35 35 H 1.09003 * 109.47520 * 59.99851 * 25 24 12 36 36 H 1.08998 * 109.47078 * 180.02562 * 25 24 12 37 37 H 1.09000 * 109.47525 * 299.99675 * 25 24 12 38 38 H 1.08998 * 109.47213 * 65.01847 * 26 24 12 39 39 H 1.08997 * 109.47115 * 185.02072 * 26 24 12 40 40 H 1.08996 * 109.47004 * 305.01584 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1204 0.0000 4 1 1.9622 2.0324 -0.0004 5 6 3.6214 0.7604 -0.0006 6 6 4.8097 1.4839 -0.0004 7 6 6.0158 0.8185 -0.0006 8 6 6.0589 -0.5691 -0.0005 9 6 4.9043 -1.2994 -0.0007 10 6 3.6706 -0.6454 -0.0005 11 6 2.2777 -1.0991 -0.0005 12 6 1.8004 -2.5286 0.0045 13 1 1.4902 -2.9172 0.9744 14 6 2.4757 -3.5021 -0.9636 15 1 2.6093 -4.5313 -0.6307 16 6 3.5667 -2.9580 -1.8495 17 1 3.5040 -1.9471 -2.2245 18 6 4.6448 -3.7509 -2.1814 19 7 4.7208 -4.9819 -1.7252 20 14 5.9967 -3.0767 -3.2801 21 1 5.6761 -1.6765 -3.6570 22 1 7.2896 -3.1087 -2.5503 23 1 6.0994 -3.9087 -4.5059 24 6 1.0456 -3.0255 -1.2301 25 6 -0.0865 -4.0306 -1.0087 26 6 0.8326 -2.0331 -2.3749 27 1 -0.3633 0.1023 1.0226 28 1 -0.3634 0.8343 -0.5999 29 1 -0.3633 -0.9368 -0.4227 30 1 4.7866 2.5637 -0.0001 31 1 6.9372 1.3820 -0.0009 32 1 7.0130 -1.0754 -0.0011 33 1 4.9456 -2.3786 -0.0010 34 1 5.4795 -5.5395 -1.9585 35 1 -0.8465 -3.5861 -0.3660 36 1 -0.5308 -4.2945 -1.9683 37 1 0.3114 -4.9275 -0.5340 38 1 1.7968 -1.7616 -2.8046 39 1 0.2091 -2.4920 -3.1422 40 1 0.3399 -1.1388 -1.9935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000509381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:36 Heat of formation + Delta-G solvation = 72.296716 kcal Electronic energy + Delta-G solvation = -21227.427196 eV Core-core repulsion = 18393.855979 eV Total energy + Delta-G solvation = -2833.571218 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.71443 -37.40275 -36.26712 -32.42014 -31.35880 -30.52902 -28.83374 -27.98642 -26.76988 -26.11528 -24.80310 -21.70992 -21.25008 -20.39490 -18.58975 -17.28168 -16.77613 -15.99990 -15.54209 -14.59638 -14.46305 -14.33841 -13.68229 -13.31986 -13.11556 -13.05495 -12.86540 -12.50046 -12.06544 -11.96251 -11.73677 -11.41096 -11.10312 -11.05319 -10.92386 -10.83035 -10.73659 -10.65350 -10.36499 -9.96876 -9.92613 -9.28203 -8.95132 -8.63143 -8.18048 -8.02176 -7.41657 -6.75051 -6.06670 -3.94119 1.89933 2.38293 3.29614 3.39329 3.40369 3.47482 3.69943 4.43677 4.72582 4.89014 5.35367 5.41162 5.46864 5.60170 5.68871 5.82271 5.88086 5.95155 6.02391 6.11625 6.18676 6.23902 6.33896 6.43079 6.47853 6.53702 6.63465 6.73820 6.77401 6.84834 6.93195 7.01753 7.15546 7.19404 7.25805 7.44589 7.50165 7.60625 7.69874 7.78518 7.93168 7.97300 8.19763 8.54388 9.06579 9.57185 11.02998 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.011934 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.473893 B = 2345.743038 C = 3987.217217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.038 3.962 3 N -0.602 5.602 4 H 0.403 0.597 5 C 0.088 3.912 6 C -0.157 4.157 7 C -0.100 4.100 8 C -0.181 4.181 9 C -0.017 4.017 10 C -0.077 4.077 11 C -0.070 4.070 12 C -0.128 4.128 13 H 0.082 0.918 14 C 0.049 3.951 15 H 0.090 0.910 16 C -0.460 4.460 17 H 0.065 0.935 18 C 0.070 3.930 19 N -0.887 5.887 20 Si 0.877 3.123 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.286 1.286 24 C -0.163 4.163 25 C -0.103 4.103 26 C -0.108 4.108 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.145 0.855 34 H 0.261 0.739 35 H 0.037 0.963 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 9.168 3.577 10.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.066 4.066 3 N -0.207 5.207 4 H 0.238 0.762 5 C -0.018 4.018 6 C -0.178 4.178 7 C -0.120 4.120 8 C -0.201 4.201 9 C -0.036 4.036 10 C -0.082 4.082 11 C -0.077 4.077 12 C -0.147 4.147 13 H 0.100 0.900 14 C 0.030 3.970 15 H 0.108 0.892 16 C -0.497 4.497 17 H 0.083 0.917 18 C -0.133 4.133 19 N -0.525 5.525 20 Si 0.704 3.296 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.212 1.212 24 C -0.164 4.164 25 C -0.160 4.160 26 C -0.164 4.164 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.162 0.838 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.784 9.086 3.560 10.868 hybrid contribution 0.639 0.925 -0.682 1.315 sum -4.145 10.010 2.878 11.210 Atomic orbital electron populations 1.20480 0.88866 1.03593 1.01534 1.19872 0.92667 0.85556 1.08534 1.41464 1.04003 1.07345 1.67891 0.76209 1.18253 0.84244 0.94683 1.04646 1.19722 0.90019 0.97811 1.10254 1.20626 0.95989 0.94539 1.00806 1.20590 0.98223 0.93651 1.07637 1.20863 0.89773 1.01525 0.91391 1.19009 0.93721 0.90536 1.04933 1.19244 0.89889 0.92637 1.05921 1.20685 1.09185 0.91848 0.92987 0.90038 1.20332 0.87983 0.94753 0.93915 0.89171 1.20682 1.02899 0.98742 1.27394 0.91720 1.24945 0.98059 0.94680 0.95606 1.69928 1.30561 1.07303 1.44688 0.86737 0.82459 0.79597 0.80769 1.19310 1.20576 1.21199 1.21677 0.97341 1.00995 0.96381 1.21247 0.96844 0.97915 0.99974 1.21355 1.01868 0.96948 0.96269 0.91995 0.92642 0.88868 0.87658 0.87086 0.87174 0.83770 0.92883 0.94429 0.93508 0.93257 0.91211 0.94717 0.94092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.19 36.01 0.33 -0.88 16 2 C 0.04 0.67 6.43 -81.77 -0.53 0.14 16 3 N -0.60 -9.82 6.07 -6.95 -0.04 -9.87 16 4 H 0.40 5.09 8.96 -40.82 -0.37 4.72 16 5 C 0.09 1.67 7.28 -83.99 -0.61 1.06 16 6 C -0.16 -2.69 10.08 -39.43 -0.40 -3.09 16 7 C -0.10 -1.74 10.01 -39.54 -0.40 -2.13 16 8 C -0.18 -3.55 9.97 -39.95 -0.40 -3.94 16 9 C -0.02 -0.38 8.31 -39.64 -0.33 -0.71 16 10 C -0.08 -1.66 5.15 -105.14 -0.54 -2.20 16 11 C -0.07 -1.44 4.38 -102.71 -0.45 -1.89 16 12 C -0.13 -2.69 5.43 -91.77 -0.50 -3.19 16 13 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 14 C 0.05 1.17 5.51 -91.73 -0.51 0.67 16 15 H 0.09 2.38 7.28 -51.93 -0.38 2.00 16 16 C -0.46 -11.84 4.19 -34.44 -0.14 -11.98 16 17 H 0.06 1.75 5.38 -52.48 -0.28 1.46 16 18 C 0.07 1.85 4.78 -17.82 -0.09 1.76 16 19 N -0.89 -24.56 12.83 55.43 0.71 -23.85 16 20 Si 0.88 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.16 -3.32 2.06 -154.47 -0.32 -3.64 16 25 C -0.10 -1.81 9.85 37.16 0.37 -1.45 16 26 C -0.11 -2.12 8.63 37.16 0.32 -1.80 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.37 5.33 -51.93 -0.28 1.09 16 30 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 31 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.11 1.99 8.06 -52.48 -0.42 1.57 16 33 H 0.14 3.50 6.17 -52.49 -0.32 3.18 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 37 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 38 H 0.07 1.57 5.58 -51.93 -0.29 1.28 16 39 H 0.03 0.63 7.85 -51.93 -0.41 0.22 16 40 H 0.04 0.72 4.56 -51.93 -0.24 0.48 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -28.14 312.95 -9.30 -37.44 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.48 Total: 8.71 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: -4.18 Total: -33.27 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.67 Total: -33.71 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.14 -9.30 -37.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000509381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.733 kcal (2) G-P(sol) polarization free energy of solvation -28.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds