Wall clock time and date at job start Mon Mar 30 2020 06:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47464 * 2 1 4 4 C 1.46906 * 110.99546 * 301.89541 * 3 2 1 5 5 C 1.52999 * 109.46805 * 287.20579 * 4 3 2 6 6 F 1.39900 * 109.47435 * 304.60855 * 5 4 3 7 7 F 1.39895 * 109.47127 * 64.60898 * 5 4 3 8 8 C 1.46906 * 111.00057 * 65.84447 * 3 2 1 9 9 H 1.08999 * 109.47049 * 296.05127 * 8 3 2 10 10 C 1.50695 * 109.46897 * 176.05072 * 8 3 2 11 11 H 1.08008 * 120.00101 * 295.61623 * 10 8 3 12 12 C 1.37874 * 120.00068 * 115.35016 * 10 8 3 13 13 N 1.31520 * 120.00045 * 182.67122 * 12 10 8 14 14 Si 1.86801 * 120.00098 * 2.66323 * 12 10 8 15 15 H 1.48503 * 109.46643 * 91.83619 * 14 12 10 16 16 H 1.48496 * 109.47317 * 211.83585 * 14 12 10 17 17 H 1.48497 * 109.47020 * 331.84220 * 14 12 10 18 18 C 1.50705 * 109.46845 * 56.05029 * 8 3 2 19 19 C 1.38231 * 119.99683 * 45.90890 * 18 8 3 20 20 C 1.38244 * 119.99281 * 179.81087 * 19 18 8 21 21 C 1.38233 * 120.00256 * 0.39661 * 20 19 18 22 22 C 1.38237 * 119.99873 * 359.85453 * 21 20 19 23 23 C 1.38230 * 120.00090 * 359.96160 * 22 21 20 24 24 H 1.08997 * 109.47612 * 184.28785 * 1 2 3 25 25 H 1.09004 * 109.47123 * 304.29100 * 1 2 3 26 26 H 1.08998 * 109.47267 * 64.28086 * 1 2 3 27 27 H 1.08998 * 109.47440 * 239.99911 * 2 1 3 28 28 H 1.09005 * 109.47021 * 119.99434 * 2 1 3 29 29 H 1.08996 * 109.47085 * 47.20797 * 4 3 2 30 30 H 1.09000 * 109.46826 * 167.20505 * 4 3 2 31 31 H 1.09006 * 109.46797 * 184.61361 * 5 4 3 32 32 H 0.96999 * 120.00077 * 179.97438 * 13 12 10 33 33 H 1.07990 * 120.00620 * 359.97438 * 19 18 8 34 34 H 1.08005 * 119.99664 * 180.23419 * 20 19 18 35 35 H 1.08000 * 120.00001 * 179.83921 * 21 20 19 36 36 H 1.07997 * 119.99851 * 179.97438 * 22 21 20 37 37 H 1.08006 * 120.00307 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5120 2.1228 -1.1644 5 6 2.2298 1.6402 -2.4265 6 9 3.6123 1.7669 -2.2541 7 9 1.9101 0.2986 -2.6606 8 6 1.6661 2.0684 1.2514 9 1 0.5816 2.1432 1.3307 10 6 2.2665 3.4506 1.2558 11 1 3.3396 3.5733 1.2557 12 6 1.4461 4.5586 1.2543 13 7 1.9693 5.7643 1.2051 14 14 -0.4087 4.3475 1.3221 15 1 -0.8583 4.3727 2.7372 16 1 -1.0604 5.4537 0.5759 17 1 -0.7818 3.0483 0.7073 18 6 2.2025 1.2840 2.4211 19 6 3.4996 0.8067 2.3966 20 6 3.9927 0.0905 3.4713 21 6 3.1862 -0.1555 4.5667 22 6 1.8874 0.3173 4.5887 23 6 1.3954 1.0368 3.5158 24 1 -0.3634 -1.0247 0.0768 25 1 -0.3633 0.5790 0.8491 26 1 -0.3634 0.4460 -0.9258 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.4409 1.9483 -1.2663 30 1 1.6950 3.1885 -1.0273 31 1 1.9130 2.2432 -3.2776 32 1 1.3921 6.5438 1.2037 33 1 4.1285 0.9956 1.5393 34 1 5.0074 -0.2792 3.4539 35 1 3.5707 -0.7173 5.4051 36 1 1.2571 0.1248 5.4443 37 1 0.3805 1.4059 3.5329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386939607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:30 Heat of formation + Delta-G solvation = -68.168647 kcal Electronic energy + Delta-G solvation = -21765.676370 eV Core-core repulsion = 18371.784588 eV Total energy + Delta-G solvation = -3393.891783 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.36815 -46.33281 -39.01380 -36.94473 -32.93247 -31.29368 -30.28617 -30.20289 -28.02970 -26.33524 -23.12105 -22.78186 -21.80596 -20.87933 -19.03111 -17.38973 -16.95220 -16.70793 -16.16551 -15.43606 -15.06235 -14.72161 -14.35224 -14.08895 -13.82271 -13.20564 -13.02484 -12.81723 -12.72962 -12.66477 -12.53820 -12.16690 -12.03133 -11.79274 -11.55613 -11.20966 -11.06119 -10.91318 -10.51230 -10.42770 -10.04457 -9.80420 -9.77244 -9.55255 -8.81704 -8.23510 -7.86070 -7.35109 -6.27928 -4.27182 2.07843 2.12829 3.08585 3.15635 3.20588 4.18510 4.32408 4.46606 4.68761 4.89323 5.09889 5.18528 5.48150 5.51518 5.57923 5.60860 5.66936 5.72946 5.89551 5.99561 6.06541 6.22067 6.26535 6.34494 6.37151 6.50617 6.52670 6.69599 6.77434 6.82404 7.11640 7.18309 7.32151 7.45847 7.73299 7.90513 7.99338 8.45625 8.86633 9.32122 10.83799 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.010330 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.775545 B = 2709.821724 C = 3746.000565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.028 3.972 3 N -0.518 5.518 4 C 0.002 3.998 5 C 0.269 3.731 6 F -0.196 7.196 7 F -0.214 7.214 8 C 0.202 3.798 9 H 0.028 0.972 10 C -0.489 4.489 11 H 0.085 0.915 12 C 0.076 3.924 13 N -0.884 5.884 14 Si 0.860 3.140 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.261 1.261 18 C -0.027 4.027 19 C -0.095 4.095 20 C -0.128 4.128 21 C -0.147 4.147 22 C -0.125 4.125 23 C -0.133 4.133 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.267 0.733 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 -9.481 -2.082 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.101 4.101 3 N -0.241 5.241 4 C -0.128 4.128 5 C 0.214 3.786 6 F -0.177 7.177 7 F -0.196 7.196 8 C 0.098 3.902 9 H 0.046 0.954 10 C -0.527 4.527 11 H 0.103 0.897 12 C -0.128 4.128 13 N -0.520 5.520 14 Si 0.687 3.313 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.186 1.186 18 C -0.028 4.028 19 C -0.113 4.113 20 C -0.146 4.146 21 C -0.165 4.165 22 C -0.143 4.143 23 C -0.152 4.152 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.002 -9.295 -2.114 9.740 hybrid contribution -1.888 0.057 0.255 1.906 sum -3.890 -9.238 -1.859 10.194 Atomic orbital electron populations 1.22380 0.99506 1.01187 1.01531 1.22514 0.92251 0.92400 1.02899 1.62533 1.58450 1.00501 1.02633 1.23135 0.96663 1.03255 0.89700 1.22064 0.78012 0.78756 0.99729 1.92974 1.32184 1.95632 1.96906 1.92850 1.92650 1.38453 1.95637 1.18986 0.94701 0.92925 0.83621 0.95445 1.20845 0.95885 0.86339 1.49672 0.89726 1.25107 0.98017 0.95277 0.94399 1.69881 1.35513 0.97778 1.48849 0.87131 0.86862 0.78003 0.79276 1.19816 1.20999 1.18608 1.20172 0.93864 0.92722 0.96006 1.21030 0.95560 0.96676 0.98058 1.21092 0.99080 1.00097 0.94364 1.20874 0.94639 1.02543 0.98460 1.20908 0.95846 0.99514 0.98042 1.20939 0.99563 1.00126 0.94548 0.93036 0.92753 0.92985 0.90156 0.91074 0.92951 0.85896 0.88246 0.92272 0.85574 0.87142 0.87389 0.87292 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 9.22 37.16 0.34 -2.74 16 2 C 0.03 0.49 5.36 -3.82 -0.02 0.47 16 3 N -0.52 -10.40 3.88 -229.43 -0.89 -11.29 16 4 C 0.00 0.03 5.04 -3.82 -0.02 0.01 16 5 C 0.27 4.35 5.57 37.16 0.21 4.56 16 6 F -0.20 -3.69 17.18 2.25 0.04 -3.65 16 7 F -0.21 -3.49 14.50 2.25 0.03 -3.46 16 8 C 0.20 4.47 1.27 -70.01 -0.09 4.38 16 9 H 0.03 0.63 2.60 -51.93 -0.13 0.49 16 10 C -0.49 -12.68 7.54 -34.44 -0.26 -12.94 16 11 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 12 C 0.08 2.01 5.09 -17.82 -0.09 1.92 16 13 N -0.88 -25.11 13.96 55.43 0.77 -24.34 16 14 Si 0.86 19.69 27.43 -169.99 -4.66 15.02 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.26 -5.62 6.13 56.52 0.35 -5.27 16 18 C -0.03 -0.56 3.48 -104.62 -0.36 -0.92 16 19 C -0.09 -1.87 8.46 -39.58 -0.34 -2.21 16 20 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 16 21 C -0.15 -2.37 10.05 -39.58 -0.40 -2.77 16 22 C -0.12 -2.11 10.05 -39.58 -0.40 -2.50 16 23 C -0.13 -2.57 9.67 -39.58 -0.38 -2.95 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.97 6.44 -51.93 -0.33 0.63 16 26 H 0.05 0.83 6.35 -51.93 -0.33 0.50 16 27 H 0.08 1.40 5.60 -51.93 -0.29 1.10 16 28 H 0.07 1.29 6.23 -51.93 -0.32 0.97 16 29 H 0.05 0.93 5.74 -51.93 -0.30 0.63 16 30 H 0.12 2.59 6.32 -51.93 -0.33 2.26 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.13 2.59 7.90 -52.49 -0.41 2.17 16 34 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.11 2.00 7.99 -52.48 -0.42 1.58 16 LS Contribution 300.12 15.07 4.52 4.52 Total: -1.00 -28.06 300.12 -6.99 -35.05 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.60 Total: 6.42 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.20 Total: -18.28 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.12 Total: -35.63 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.07 Total: -7.11 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.66 Total: 15.02 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.06 -6.99 -35.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386939607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.122 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds