Wall clock time and date at job start Mon Mar 30 2020 07:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.57355 * 2 1 4 4 C 1.53095 * 109.57942 * 239.74013 * 2 1 3 5 5 C 1.52584 * 109.95484 * 177.16855 * 4 2 1 6 6 C 1.52580 * 110.72618 * 70.67540 * 5 4 2 7 7 H 1.08999 * 109.39307 * 49.46782 * 6 5 4 8 8 N 1.46900 * 109.39254 * 169.27904 * 6 5 4 9 9 C 1.46892 * 111.00377 * 66.23565 * 8 6 5 10 10 C 1.46894 * 111.00267 * 190.19755 * 8 6 5 11 11 C 1.53001 * 109.47367 * 163.67605 * 10 8 6 12 12 C 1.50703 * 115.55225 * 305.53986 * 11 10 8 13 13 H 1.07994 * 120.00403 * 144.41009 * 12 11 10 14 14 C 1.37885 * 119.99624 * 324.41018 * 12 11 10 15 15 N 1.31518 * 120.00002 * 350.11852 * 14 12 11 16 16 Si 1.86801 * 119.99901 * 170.12355 * 14 12 11 17 17 H 1.48502 * 109.47136 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47116 * 119.99953 * 16 14 12 19 19 H 1.48498 * 109.46792 * 239.99934 * 16 14 12 20 20 C 1.52999 * 117.50122 * 159.86557 * 11 10 8 21 21 C 1.53001 * 117.49576 * 91.20536 * 11 10 8 22 22 C 1.53107 * 109.87350 * 289.37075 * 6 5 4 23 23 S 1.81551 * 108.93727 * 63.07340 * 22 6 5 24 24 H 1.09004 * 109.47187 * 180.25610 * 1 2 3 25 25 H 1.08993 * 109.47389 * 300.26225 * 1 2 3 26 26 H 1.09003 * 109.46602 * 60.26607 * 1 2 3 27 27 H 1.08994 * 109.38997 * 57.02150 * 4 2 1 28 28 H 1.08997 * 109.30537 * 297.26259 * 4 2 1 29 29 H 1.09001 * 109.22762 * 310.35392 * 5 4 2 30 30 H 1.08996 * 109.22405 * 190.99516 * 5 4 2 31 31 H 1.09001 * 109.47179 * 68.60259 * 9 8 6 32 32 H 1.09000 * 109.47674 * 188.60110 * 9 8 6 33 33 H 1.09003 * 109.47747 * 308.60519 * 9 8 6 34 34 H 1.08992 * 109.47314 * 283.67989 * 10 8 6 35 35 H 1.09001 * 109.47335 * 43.67693 * 10 8 6 36 36 H 0.97000 * 119.99789 * 185.03039 * 15 14 12 37 37 H 1.09004 * 117.49879 * 0.02562 * 20 11 10 38 38 H 1.08999 * 117.50217 * 145.01684 * 20 11 10 39 39 H 1.08998 * 117.49804 * 214.97686 * 21 11 10 40 40 H 1.08992 * 117.50221 * 359.97438 * 21 11 10 41 41 H 1.08999 * 109.56908 * 182.78211 * 22 6 5 42 42 H 1.09000 * 109.57746 * 303.17080 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0431 -0.7269 -1.2459 5 6 3.5672 -0.6710 -1.2907 6 6 4.1722 -1.5569 -0.2058 7 1 3.7098 -2.5432 -0.2443 8 7 5.6179 -1.6867 -0.4319 9 6 6.2977 -0.3979 -0.2458 10 6 6.1966 -2.7179 0.4396 11 6 7.5778 -3.1138 -0.0862 12 6 7.6233 -3.5532 -1.5270 13 1 8.4784 -3.3083 -2.1395 14 6 6.5732 -4.2679 -2.0633 15 7 5.6261 -4.7337 -1.2786 16 14 6.4957 -4.5747 -3.9043 17 1 7.6727 -3.9502 -4.5601 18 1 6.5022 -6.0369 -4.1632 19 1 5.2505 -3.9803 -4.4532 20 6 8.5369 -3.7963 0.8911 21 6 8.7864 -2.3495 0.4578 22 6 3.9271 -0.9342 1.1713 23 16 2.1389 -0.8660 1.4773 24 1 -0.3634 -1.0277 0.0046 25 1 -0.3634 0.5179 0.8875 26 1 -0.3633 0.5097 -0.8924 27 1 1.6370 -0.2482 -2.1370 28 1 1.7198 -1.7674 -1.2147 29 1 3.8934 0.3577 -1.1374 30 1 3.9103 -1.0139 -2.2668 31 1 6.2641 -0.1182 0.8072 32 1 7.3360 -0.4852 -0.5655 33 1 5.7973 0.3662 -0.8407 34 1 6.2919 -2.3262 1.4522 35 1 5.5467 -3.5929 0.4483 36 1 4.9269 -5.2977 -1.6445 37 1 8.1838 -3.9636 1.9087 38 1 9.2010 -4.5629 0.4920 39 1 9.6147 -2.1650 -0.2263 40 1 8.5976 -1.5644 1.1899 41 1 4.4035 -1.5450 1.9382 42 1 4.3410 0.0739 1.1952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689638708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:56 Heat of formation + Delta-G solvation = 23.574107 kcal Electronic energy + Delta-G solvation = -19910.323401 eV Core-core repulsion = 17210.083364 eV Total energy + Delta-G solvation = -2700.240037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.51887 -36.46045 -34.70835 -31.98382 -31.10472 -28.26924 -26.73296 -25.42689 -25.12543 -22.88325 -21.31470 -21.10382 -19.32665 -18.77337 -16.70505 -16.09276 -15.09940 -14.90571 -14.59171 -14.18551 -13.92877 -13.89712 -13.58874 -13.07977 -12.98418 -12.82101 -12.33648 -11.95282 -11.56899 -11.44902 -11.28657 -11.13472 -10.91300 -10.90205 -10.80511 -10.57842 -10.40429 -10.35920 -10.17908 -9.92897 -9.53374 -9.22326 -8.95043 -8.59352 -7.95053 -7.68137 -7.04664 -5.87371 -3.88829 1.94040 2.73314 3.34801 3.43485 3.47390 4.49540 4.65452 4.74212 4.93346 5.05324 5.18215 5.23030 5.30478 5.50387 5.58614 5.63801 5.67698 5.71488 5.83443 5.85774 6.02857 6.04991 6.08902 6.13667 6.20189 6.28835 6.38649 6.54892 6.57573 6.62416 6.69419 6.74064 6.84430 6.98635 7.20343 7.37222 7.60812 8.03926 8.15827 8.21252 8.59195 9.04475 9.70772 11.15084 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.006799 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.764615 B = 4117.052897 C = 4927.542882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 H 0.082 0.918 4 C -0.115 4.115 5 C -0.118 4.118 6 C 0.094 3.906 7 H 0.097 0.903 8 N -0.489 5.489 9 C 0.024 3.976 10 C 0.102 3.898 11 C 0.069 3.931 12 C -0.471 4.471 13 H 0.053 0.947 14 C 0.089 3.911 15 N -0.877 5.877 16 Si 0.888 3.112 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.284 1.284 20 C -0.208 4.208 21 C -0.218 4.218 22 C -0.109 4.109 23 S -0.274 6.274 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.008 0.992 32 H 0.073 0.927 33 H 0.050 0.950 34 H -0.013 1.013 35 H 0.117 0.883 36 H 0.256 0.744 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 8.925 2.277 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.179 4.179 3 H 0.101 0.899 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.017 4.017 7 H 0.115 0.885 8 N -0.210 5.210 9 C -0.125 4.125 10 C -0.025 4.025 11 C 0.068 3.932 12 C -0.508 4.508 13 H 0.071 0.929 14 C -0.114 4.114 15 N -0.515 5.515 16 Si 0.717 3.283 17 H -0.201 1.201 18 H -0.216 1.216 19 H -0.210 1.210 20 C -0.246 4.246 21 C -0.255 4.255 22 C -0.259 4.259 23 S -0.048 6.048 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.026 0.974 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.005 0.995 35 H 0.135 0.865 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.473 8.335 2.642 12.175 hybrid contribution 0.752 0.615 -0.948 1.358 sum -7.721 8.950 1.694 11.941 Atomic orbital electron populations 1.21601 0.92321 1.02981 1.02094 1.23169 0.98915 1.00684 0.95143 0.89950 1.21809 0.96249 1.01442 0.95930 1.21541 0.93621 0.99396 1.01071 1.21923 0.91049 0.99462 0.89250 0.88508 1.61947 0.99466 1.05104 1.54474 1.22449 1.00795 0.91948 0.97297 1.21813 0.97772 0.94762 0.88139 1.18938 0.85817 0.94878 0.93601 1.20308 1.03024 1.34484 0.93022 0.92868 1.24720 0.94794 0.94906 0.96949 1.69775 1.14304 1.33051 1.34328 0.86619 0.77922 0.77253 0.86497 1.20118 1.21603 1.20986 1.22971 1.08119 0.94129 0.99401 1.22934 1.04587 0.93816 1.04172 1.24357 0.92875 1.04548 1.04115 1.86660 1.08646 1.78205 1.31337 0.91592 0.92114 0.91439 0.91262 0.90474 0.92659 0.89910 0.97392 0.90820 0.93108 0.99516 0.86511 0.93337 0.92097 0.90508 0.90966 0.92002 0.88198 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.22 37.16 0.34 -1.01 16 2 C -0.05 -0.62 3.11 -26.68 -0.08 -0.71 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.51 5.04 -26.90 -0.14 -1.65 16 5 C -0.12 -1.84 4.57 -27.16 -0.12 -1.96 16 6 C 0.09 1.67 2.03 -67.87 -0.14 1.54 16 7 H 0.10 1.99 7.77 -51.93 -0.40 1.58 16 8 N -0.49 -9.96 4.26 -235.09 -1.00 -10.97 16 9 C 0.02 0.43 8.24 60.06 0.49 0.92 16 10 C 0.10 2.30 3.48 -3.83 -0.01 2.29 16 11 C 0.07 1.65 1.59 -155.66 -0.25 1.40 16 12 C -0.47 -12.54 8.73 -34.44 -0.30 -12.84 16 13 H 0.05 1.45 7.83 -52.49 -0.41 1.04 16 14 C 0.09 2.35 5.19 -17.81 -0.09 2.26 16 15 N -0.88 -23.34 10.74 55.43 0.60 -22.74 16 16 Si 0.89 21.02 29.55 -169.99 -5.02 16.00 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 C -0.21 -4.72 9.96 -26.69 -0.27 -4.98 16 21 C -0.22 -4.70 8.57 -26.69 -0.23 -4.93 16 22 C -0.11 -1.75 4.92 37.21 0.18 -1.57 16 23 S -0.27 -4.11 21.70 -107.50 -2.33 -6.44 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 29 H 0.05 0.80 6.80 -51.93 -0.35 0.45 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.01 0.13 6.70 -51.93 -0.35 -0.21 16 32 H 0.07 1.43 6.66 -51.93 -0.35 1.09 16 33 H 0.05 0.82 6.34 -51.93 -0.33 0.49 16 34 H -0.01 -0.28 7.09 -51.93 -0.37 -0.65 16 35 H 0.12 2.94 5.64 -51.93 -0.29 2.65 16 36 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.10 1.73 6.94 -51.93 -0.36 1.37 16 42 H 0.08 1.20 6.72 -51.93 -0.35 0.85 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -26.28 328.51 -10.76 -37.04 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.34 Total: 3.41 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -0.61 Total: -21.25 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: -0.41 Total: -33.71 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -2.33 Total: -6.44 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.28 -10.76 -37.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689638708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.617 kcal (2) G-P(sol) polarization free energy of solvation -26.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds