Wall clock time and date at job start Mon Mar 30 2020 07:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.57355 * 2 1 4 4 C 1.53095 * 109.57942 * 239.74013 * 2 1 3 5 5 C 1.52584 * 109.95484 * 177.16855 * 4 2 1 6 6 C 1.52580 * 110.72618 * 70.67540 * 5 4 2 7 7 H 1.08999 * 109.39307 * 49.46782 * 6 5 4 8 8 N 1.46900 * 109.39254 * 169.27904 * 6 5 4 9 9 C 1.46892 * 111.00377 * 66.23565 * 8 6 5 10 10 C 1.46894 * 111.00267 * 190.19755 * 8 6 5 11 11 C 1.53001 * 109.47367 * 163.67605 * 10 8 6 12 12 C 1.50703 * 115.55225 * 305.53986 * 11 10 8 13 13 H 1.07994 * 120.00403 * 144.41009 * 12 11 10 14 14 C 1.37885 * 119.99624 * 324.41018 * 12 11 10 15 15 N 1.31518 * 120.00002 * 350.11852 * 14 12 11 16 16 Si 1.86801 * 119.99901 * 170.12355 * 14 12 11 17 17 H 1.48502 * 109.47136 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47116 * 119.99953 * 16 14 12 19 19 H 1.48498 * 109.46792 * 239.99934 * 16 14 12 20 20 C 1.52999 * 117.50122 * 159.86557 * 11 10 8 21 21 C 1.53001 * 117.49576 * 91.20536 * 11 10 8 22 22 C 1.53107 * 109.87350 * 289.37075 * 6 5 4 23 23 S 1.81551 * 108.93727 * 63.07340 * 22 6 5 24 24 H 1.09004 * 109.47187 * 180.25610 * 1 2 3 25 25 H 1.08993 * 109.47389 * 300.26225 * 1 2 3 26 26 H 1.09003 * 109.46602 * 60.26607 * 1 2 3 27 27 H 1.08994 * 109.38997 * 57.02150 * 4 2 1 28 28 H 1.08997 * 109.30537 * 297.26259 * 4 2 1 29 29 H 1.09001 * 109.22762 * 310.35392 * 5 4 2 30 30 H 1.08996 * 109.22405 * 190.99516 * 5 4 2 31 31 H 1.09001 * 109.47179 * 68.60259 * 9 8 6 32 32 H 1.09000 * 109.47674 * 188.60110 * 9 8 6 33 33 H 1.09003 * 109.47747 * 308.60519 * 9 8 6 34 34 H 1.08992 * 109.47314 * 283.67989 * 10 8 6 35 35 H 1.09001 * 109.47335 * 43.67693 * 10 8 6 36 36 H 0.97000 * 119.99789 * 185.03039 * 15 14 12 37 37 H 1.09004 * 117.49879 * 0.02562 * 20 11 10 38 38 H 1.08999 * 117.50217 * 145.01684 * 20 11 10 39 39 H 1.08998 * 117.49804 * 214.97686 * 21 11 10 40 40 H 1.08992 * 117.50221 * 359.97438 * 21 11 10 41 41 H 1.08999 * 109.56908 * 182.78211 * 22 6 5 42 42 H 1.09000 * 109.57746 * 303.17080 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0431 -0.7269 -1.2459 5 6 3.5672 -0.6710 -1.2907 6 6 4.1722 -1.5569 -0.2058 7 1 3.7098 -2.5432 -0.2443 8 7 5.6179 -1.6867 -0.4319 9 6 6.2977 -0.3979 -0.2458 10 6 6.1966 -2.7179 0.4396 11 6 7.5778 -3.1138 -0.0862 12 6 7.6233 -3.5532 -1.5270 13 1 8.4784 -3.3083 -2.1395 14 6 6.5732 -4.2679 -2.0633 15 7 5.6261 -4.7337 -1.2786 16 14 6.4957 -4.5747 -3.9043 17 1 7.6727 -3.9502 -4.5601 18 1 6.5022 -6.0369 -4.1632 19 1 5.2505 -3.9803 -4.4532 20 6 8.5369 -3.7963 0.8911 21 6 8.7864 -2.3495 0.4578 22 6 3.9271 -0.9342 1.1713 23 16 2.1389 -0.8660 1.4773 24 1 -0.3634 -1.0277 0.0046 25 1 -0.3634 0.5179 0.8875 26 1 -0.3633 0.5097 -0.8924 27 1 1.6370 -0.2482 -2.1370 28 1 1.7198 -1.7674 -1.2147 29 1 3.8934 0.3577 -1.1374 30 1 3.9103 -1.0139 -2.2668 31 1 6.2641 -0.1182 0.8072 32 1 7.3360 -0.4852 -0.5655 33 1 5.7973 0.3662 -0.8407 34 1 6.2919 -2.3262 1.4522 35 1 5.5467 -3.5929 0.4483 36 1 4.9269 -5.2977 -1.6445 37 1 8.1838 -3.9636 1.9087 38 1 9.2010 -4.5629 0.4920 39 1 9.6147 -2.1650 -0.2263 40 1 8.5976 -1.5644 1.1899 41 1 4.4035 -1.5450 1.9382 42 1 4.3410 0.0739 1.1952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689638708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:56 Heat of formation + Delta-G solvation = 11.092335 kcal Electronic energy + Delta-G solvation = -19910.864652 eV Core-core repulsion = 17210.083364 eV Total energy + Delta-G solvation = -2700.781287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.03017 -38.04459 -35.99105 -33.99906 -32.36245 -29.48942 -28.36534 -27.33437 -26.47724 -24.21734 -22.90829 -22.42069 -20.83961 -20.54214 -18.02618 -17.88663 -16.63597 -16.35269 -16.22397 -15.66422 -15.44128 -15.11646 -14.95593 -14.57966 -14.38557 -14.04823 -13.86047 -13.28847 -13.02569 -12.95820 -12.82060 -12.63086 -12.51176 -12.34060 -12.24456 -12.13449 -11.96263 -11.89803 -11.66778 -11.57950 -11.02081 -10.89575 -10.68471 -10.44009 -9.87320 -9.02321 -8.44646 -7.87964 -5.95431 0.79549 1.43974 1.48922 1.56662 1.57535 2.52656 3.09889 3.36411 3.64786 3.77275 3.78967 3.92339 3.97003 4.19910 4.34699 4.38488 4.41523 4.48316 4.55256 4.61117 4.69047 4.72744 4.77479 4.85929 4.88373 4.93120 4.97232 5.04185 5.08421 5.14105 5.18686 5.25567 5.31728 5.36010 5.43776 5.56765 5.69605 6.08769 6.46286 6.57431 6.71047 7.02356 7.65448 9.11495 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.006799 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.764615 B = 4117.052897 C = 4927.542882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.040 4.040 3 H 0.097 0.903 4 C -0.110 4.110 5 C -0.112 4.112 6 C 0.100 3.900 7 H 0.061 0.939 8 N -0.509 5.509 9 C 0.029 3.971 10 C 0.119 3.881 11 C 0.040 3.960 12 C -0.488 4.488 13 H 0.038 0.962 14 C 0.056 3.944 15 N -0.890 5.890 16 Si 0.937 3.063 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.282 1.282 20 C -0.211 4.211 21 C -0.193 4.193 22 C -0.098 4.098 23 S -0.298 6.298 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.058 0.942 33 H 0.071 0.929 34 H -0.008 1.008 35 H 0.085 0.915 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.721 10.868 1.950 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 H 0.115 0.885 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.011 4.011 7 H 0.079 0.921 8 N -0.231 5.231 9 C -0.119 4.119 10 C -0.009 4.009 11 C 0.039 3.961 12 C -0.525 4.525 13 H 0.056 0.944 14 C -0.146 4.146 15 N -0.528 5.528 16 Si 0.765 3.235 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.208 1.208 20 C -0.250 4.250 21 C -0.230 4.230 22 C -0.248 4.248 23 S -0.072 6.072 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.009 0.991 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.421 10.281 2.320 14.137 hybrid contribution 1.043 0.002 -0.849 1.345 sum -8.379 10.283 1.471 13.346 Atomic orbital electron populations 1.21613 0.90404 1.03028 1.03617 1.23284 1.00300 1.00549 0.92694 0.88486 1.21764 0.94446 1.01058 0.97618 1.21480 0.95254 0.99411 0.98876 1.21790 0.89511 0.98447 0.91311 0.92051 1.61855 1.00903 1.05815 1.54486 1.22404 0.99895 0.91245 0.98377 1.21450 0.96363 0.94428 0.88675 1.19063 0.87420 0.96700 0.92878 1.20439 1.02746 1.34926 0.94369 0.94394 1.25210 0.94679 0.94932 0.99752 1.69911 1.14438 1.33237 1.35214 0.85861 0.77632 0.76975 0.83042 1.20239 1.21471 1.20820 1.22965 1.07589 0.94831 0.99589 1.22878 1.02921 0.93518 1.03689 1.24108 0.93939 1.04462 1.02257 1.86776 1.07724 1.79123 1.33610 0.92309 0.91527 0.88913 0.88566 0.92076 0.91022 0.91933 0.96194 0.92336 0.91079 0.99050 0.89657 0.93584 0.91005 0.91408 0.90969 0.90038 0.89919 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.22 71.98 0.66 -1.56 16 2 C -0.04 -0.88 3.11 30.63 0.10 -0.78 16 3 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 4 C -0.11 -2.65 5.04 30.49 0.15 -2.50 16 5 C -0.11 -3.33 4.57 30.32 0.14 -3.19 16 6 C 0.10 3.55 2.03 44.81 0.09 3.65 16 7 H 0.06 2.61 7.77 -2.39 -0.02 2.60 16 8 N -0.51 -20.70 4.26 -897.70 -3.83 -24.53 16 9 C 0.03 1.00 8.24 127.69 1.05 2.06 16 10 C 0.12 5.40 3.48 86.30 0.30 5.70 16 11 C 0.04 1.94 1.59 -52.93 -0.08 1.86 16 12 C -0.49 -26.27 8.73 25.60 0.22 -26.05 16 13 H 0.04 2.10 7.83 -2.91 -0.02 2.08 16 14 C 0.06 2.96 5.19 84.66 0.44 3.40 16 15 N -0.89 -48.40 10.74 21.45 0.23 -48.17 16 16 Si 0.94 43.50 29.55 68.60 2.03 45.52 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 C -0.21 -9.55 9.96 30.62 0.30 -9.25 16 21 C -0.19 -8.14 8.57 30.62 0.26 -7.87 16 22 C -0.10 -3.07 4.92 72.02 0.35 -2.71 16 23 S -0.30 -8.59 21.70 -56.49 -1.23 -9.81 16 24 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 1.69 8.06 -2.39 -0.02 1.67 16 29 H 0.07 1.88 6.80 -2.39 -0.02 1.87 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.02 0.64 6.70 -2.39 -0.02 0.62 16 32 H 0.06 2.20 6.66 -2.39 -0.02 2.18 16 33 H 0.07 2.14 6.34 -2.39 -0.02 2.13 16 34 H -0.01 -0.36 7.09 -2.39 -0.02 -0.38 16 35 H 0.09 4.45 5.64 -2.39 -0.01 4.43 16 36 H 0.25 13.44 8.32 -92.71 -0.77 12.67 16 37 H 0.07 3.05 8.14 -2.38 -0.02 3.03 16 38 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.08 2.87 6.94 -2.39 -0.02 2.85 16 42 H 0.09 2.59 6.72 -2.39 -0.02 2.57 16 Total: -1.00 -56.57 328.51 2.17 -54.41 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.97 Total: 19.84 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 3.99 Total: -37.26 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -3.60 Total: -72.70 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.23 Total: -9.81 kcal Total: -56.57 2.17 -54.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689638708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.501 kcal (2) G-P(sol) polarization free energy of solvation -56.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds