Wall clock time and date at job start Mon Mar 30 2020 06:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99642 * 2 1 4 4 O 1.20827 * 119.99977 * 0.26849 * 3 2 1 5 5 C 1.50696 * 119.99914 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47261 * 174.71214 * 5 3 2 7 7 H 1.08999 * 109.45938 * 53.98591 * 6 5 3 8 8 C 1.53040 * 109.46016 * 294.00571 * 6 5 3 9 9 C 1.53115 * 109.27797 * 180.80473 * 8 6 5 10 10 C 1.53117 * 109.15976 * 57.65758 * 9 8 6 11 11 C 1.53041 * 109.27764 * 302.34342 * 10 9 8 12 12 N 1.46845 * 109.46136 * 173.95494 * 6 5 3 13 13 C 1.46896 * 111.00206 * 305.85578 * 12 6 5 14 14 H 1.08993 * 109.47305 * 54.90597 * 13 12 6 15 15 C 1.53003 * 109.47060 * 294.90302 * 13 12 6 16 16 C 1.53002 * 109.47189 * 174.90524 * 13 12 6 17 17 C 1.50690 * 109.47238 * 294.99788 * 16 13 12 18 18 H 1.08002 * 120.00244 * 0.02562 * 17 16 13 19 19 C 1.37879 * 120.00172 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00109 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47204 * 90.00175 * 21 19 17 23 23 H 1.48498 * 109.47423 * 210.00263 * 21 19 17 24 24 H 1.48506 * 109.47336 * 330.00475 * 21 19 17 25 25 H 1.09003 * 109.46765 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47597 * 300.00238 * 1 2 3 27 27 H 1.08995 * 109.47347 * 60.00613 * 1 2 3 28 28 H 1.08999 * 109.47018 * 294.70913 * 5 3 2 29 29 H 1.08999 * 109.47493 * 54.70883 * 5 3 2 30 30 H 1.08994 * 109.50509 * 300.74944 * 8 6 5 31 31 H 1.08999 * 109.50042 * 60.86608 * 8 6 5 32 32 H 1.09004 * 109.52528 * 177.56380 * 9 8 6 33 33 H 1.09005 * 109.52231 * 297.75044 * 9 8 6 34 34 H 1.08994 * 109.50971 * 62.28573 * 10 9 8 35 35 H 1.09004 * 109.50311 * 182.36936 * 10 9 8 36 36 H 1.09005 * 109.46254 * 179.19890 * 11 10 9 37 37 H 1.09000 * 109.46054 * 299.16213 * 11 10 9 38 38 H 1.08996 * 109.47429 * 175.37843 * 15 13 12 39 39 H 1.09004 * 109.47409 * 295.37983 * 15 13 12 40 40 H 1.09005 * 109.46837 * 55.37647 * 15 13 12 41 41 H 1.09003 * 109.46858 * 55.00135 * 16 13 12 42 42 H 1.09005 * 109.46954 * 174.99375 * 16 13 12 43 43 H 0.97002 * 120.00129 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0049 5 6 3.5662 1.2750 -0.0006 6 6 4.0003 2.7361 -0.1334 7 1 3.5201 3.3297 0.6446 8 6 3.5878 3.2676 -1.5080 9 6 4.0418 4.7235 -1.6441 10 6 5.5577 4.7983 -1.4416 11 6 5.9131 4.2224 -0.0689 12 7 5.4587 2.8283 0.0110 13 6 5.9046 2.2001 1.2617 14 1 5.5413 1.1733 1.3023 15 6 5.3502 2.9848 2.4525 16 6 7.4337 2.2026 1.3168 17 6 7.9774 1.3289 0.2160 18 1 7.3002 0.8228 -0.4561 19 6 9.3395 1.1764 0.0660 20 7 10.1642 1.7931 0.8840 21 14 10.0134 0.0928 -1.2981 22 1 10.2206 0.9086 -2.5216 23 1 11.3083 -0.4946 -0.8697 24 1 9.0471 -0.9971 -1.5877 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 3.9519 0.8648 0.9327 29 1 3.9599 0.7013 -0.8396 30 1 4.0567 2.6659 -2.2865 31 1 2.5038 3.2135 -1.6088 32 1 3.7884 5.0928 -2.6379 33 1 3.5431 5.3326 -0.8902 34 1 6.0577 4.2207 -2.2190 35 1 5.8813 5.8378 -1.4956 36 1 6.9932 4.2611 0.0726 37 1 5.4239 4.8091 0.7087 38 1 5.6120 2.4730 3.3785 39 1 5.7780 3.9873 2.4580 40 1 4.2655 3.0531 2.3692 41 1 7.8002 3.2209 1.1871 42 1 7.7631 1.8181 2.2821 43 1 11.1225 1.6855 0.7787 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695816708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:25 Heat of formation + Delta-G solvation = -111.902575 kcal Electronic energy + Delta-G solvation = -22164.722876 eV Core-core repulsion = 19015.855259 eV Total energy + Delta-G solvation = -3148.867618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75335 -40.37873 -37.56195 -36.25090 -34.49770 -33.73246 -31.01557 -29.74372 -29.10822 -27.77034 -25.44976 -24.80634 -23.45283 -21.61430 -21.25365 -19.76924 -18.70726 -18.28353 -17.57770 -17.53492 -16.97557 -16.48317 -15.58095 -15.48377 -15.14614 -15.05289 -14.49478 -14.35222 -14.18864 -13.85098 -13.71587 -13.48507 -13.25213 -13.12096 -12.89392 -12.77159 -12.61368 -12.52405 -12.33452 -12.09092 -11.83672 -11.73965 -11.62760 -11.53763 -11.26568 -11.03491 -10.94244 -10.78861 -10.40461 -8.90345 -8.04822 -6.08772 1.16063 1.45992 1.46676 1.56929 1.73360 2.51678 3.11859 3.32369 3.67817 3.83122 3.97294 4.06156 4.19594 4.31557 4.32249 4.35263 4.37116 4.39478 4.46001 4.57174 4.59660 4.67947 4.72028 4.87596 4.92574 4.95729 5.02181 5.09661 5.14419 5.22298 5.25800 5.28829 5.36476 5.40919 5.56835 5.58696 5.76517 5.95596 6.36762 6.45403 6.56121 6.73992 7.05495 7.57088 9.07293 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.005766 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.987043 B = 4854.975727 C = 5370.895820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.473 3.527 4 O -0.528 6.528 5 C -0.114 4.114 6 C 0.100 3.900 7 H 0.040 0.960 8 C -0.110 4.110 9 C -0.110 4.110 10 C -0.112 4.112 11 C 0.060 3.940 12 N -0.517 5.517 13 C 0.087 3.913 14 H 0.080 0.920 15 C -0.177 4.177 16 C 0.035 3.965 17 C -0.493 4.493 18 H 0.063 0.937 19 C -0.004 4.004 20 N -0.941 5.941 21 Si 0.953 3.047 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.264 1.264 25 H 0.130 0.870 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.058 0.942 41 H -0.002 1.002 42 H -0.008 1.008 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.944 0.237 -3.147 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.317 3.683 4 O -0.418 6.418 5 C -0.152 4.152 6 C -0.008 4.008 7 H 0.058 0.942 8 C -0.148 4.148 9 C -0.148 4.148 10 C -0.150 4.150 11 C -0.067 4.067 12 N -0.242 5.242 13 C -0.021 4.021 14 H 0.098 0.902 15 C -0.236 4.236 16 C -0.002 4.002 17 C -0.532 4.532 18 H 0.081 0.919 19 C -0.200 4.200 20 N -0.584 5.584 21 Si 0.779 3.221 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.188 1.188 25 H 0.148 0.852 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.017 0.983 42 H 0.010 0.990 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.798 0.274 -3.511 18.143 hybrid contribution 0.428 0.077 0.354 0.561 sum -17.370 0.352 -3.157 17.658 Atomic orbital electron populations 1.23547 0.74753 1.05632 1.02586 1.86525 1.25109 1.32893 1.83754 1.23769 0.92121 0.81211 0.71219 1.90622 1.67744 1.36892 1.46556 1.21557 0.86752 0.99659 1.07186 1.21318 0.88094 0.93245 0.98160 0.94193 1.21666 1.00607 0.96873 0.95667 1.21495 0.95061 0.96095 1.02104 1.21566 0.96534 1.00491 0.96399 1.22001 0.99853 0.87823 0.97050 1.61955 1.09687 1.16815 1.35720 1.21780 0.96335 0.97482 0.86512 0.90235 1.22413 1.00466 1.00915 0.99782 1.19086 0.90361 0.95674 0.95082 1.21490 0.91196 1.26749 1.13723 0.91909 1.25807 0.97908 0.97748 0.98499 1.70096 1.02757 1.45762 1.39781 0.85628 0.77516 0.79345 0.79585 1.20618 1.21657 1.18787 0.85225 0.91958 0.91751 0.86750 0.86381 0.91665 0.90980 0.90447 0.92358 0.92271 0.90682 0.92423 0.95262 0.92118 0.93391 0.92272 0.98349 0.99018 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.37 -8.52 10.57 -51.42 -0.54 -9.06 16 3 C 0.47 12.49 7.59 71.23 0.54 13.03 16 4 O -0.53 -15.81 13.99 21.96 0.31 -15.50 16 5 C -0.11 -3.11 5.06 29.85 0.15 -2.96 16 6 C 0.10 3.03 1.12 44.94 0.05 3.08 16 7 H 0.04 1.28 6.32 -2.39 -0.02 1.26 16 8 C -0.11 -3.05 5.12 30.65 0.16 -2.90 16 9 C -0.11 -2.84 6.00 30.67 0.18 -2.65 16 10 C -0.11 -3.33 6.09 30.65 0.19 -3.14 16 11 C 0.06 2.15 4.64 86.33 0.40 2.55 16 12 N -0.52 -18.72 4.19 -846.02 -3.55 -22.26 16 13 C 0.09 3.38 1.92 44.92 0.09 3.47 16 14 H 0.08 3.01 5.79 -2.39 -0.01 2.99 16 15 C -0.18 -5.95 8.46 71.98 0.61 -5.34 16 16 C 0.04 1.77 4.27 29.85 0.13 1.90 16 17 C -0.49 -27.01 8.84 25.60 0.23 -26.79 16 18 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 19 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 20 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 21 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 25 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.11 3.10 5.87 -2.39 -0.01 3.09 16 29 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.97 6.27 -2.39 -0.01 1.95 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 2.46 5.94 -2.38 -0.01 2.44 16 37 H 0.03 0.99 6.72 -2.39 -0.02 0.97 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.05 1.65 6.78 -2.38 -0.02 1.64 16 40 H 0.06 1.78 6.44 -2.38 -0.02 1.76 16 41 H 0.00 -0.09 6.05 -2.39 -0.01 -0.11 16 42 H -0.01 -0.47 8.14 -2.38 -0.02 -0.48 16 43 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -64.81 329.81 3.89 -60.92 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.98 Total: 13.84 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 4.38 Total: -17.86 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -3.26 Total: -79.07 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.24 Total: -24.56 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.81 3.89 -60.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.979 kcal (2) G-P(sol) polarization free energy of solvation -64.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds