Wall clock time and date at job start Mon Mar 30 2020 07:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47072 * 2 1 4 4 C 1.53004 * 109.46888 * 119.99590 * 2 1 3 5 5 N 1.46898 * 109.47181 * 69.75644 * 4 2 1 6 6 C 1.46900 * 110.99689 * 46.54925 * 5 4 2 7 7 C 1.50703 * 109.47513 * 63.74337 * 6 5 4 8 8 H 1.07994 * 119.99596 * 5.09131 * 7 6 5 9 9 C 1.37875 * 119.99936 * 185.08219 * 7 6 5 10 10 N 1.31517 * 120.00373 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99954 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47081 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47332 * 119.99671 * 11 9 7 14 14 H 1.48497 * 109.47499 * 240.00173 * 11 9 7 15 15 C 1.46896 * 111.00501 * 282.59276 * 5 4 2 16 16 H 1.09004 * 108.85106 * 53.69347 * 15 5 4 17 17 C 1.50476 * 108.87433 * 295.14100 * 15 5 4 18 18 C 1.54242 * 108.51366 * 145.06692 * 17 15 5 19 19 C 1.45540 * 112.41189 * 79.99900 * 18 17 15 20 20 C 1.54253 * 112.39839 * 298.05654 * 19 18 17 21 21 C 1.50475 * 108.52232 * 79.97968 * 20 19 18 22 22 C 1.54060 * 108.87824 * 172.16206 * 15 5 4 23 23 H 1.09002 * 108.81442 * 283.35184 * 22 15 5 24 24 O 1.42895 * 108.81600 * 41.62977 * 22 15 5 25 25 H 1.09000 * 109.47584 * 268.33590 * 1 2 3 26 26 H 1.08998 * 109.47327 * 28.34310 * 1 2 3 27 27 H 1.09006 * 109.46753 * 148.33794 * 1 2 3 28 28 H 1.08994 * 109.47424 * 239.99344 * 2 1 3 29 29 H 1.08992 * 109.47220 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.46872 * 299.99783 * 3 2 1 31 31 H 1.09002 * 109.46921 * 59.99451 * 3 2 1 32 32 H 1.09004 * 109.46719 * 309.76063 * 4 2 1 33 33 H 1.09001 * 109.46792 * 189.76408 * 4 2 1 34 34 H 1.08995 * 109.47330 * 183.74844 * 6 5 4 35 35 H 1.09007 * 109.47068 * 303.74870 * 6 5 4 36 36 H 0.96999 * 120.00246 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.62650 * 264.77138 * 17 15 5 38 38 H 1.08998 * 109.63241 * 25.15583 * 17 15 5 39 39 H 1.09000 * 108.89193 * 200.75186 * 18 17 15 40 40 H 1.08999 * 108.89275 * 319.33823 * 18 17 15 41 41 H 1.08998 * 108.89734 * 58.80966 * 19 18 17 42 42 H 1.08991 * 108.89789 * 177.41004 * 19 18 17 43 43 H 1.08991 * 109.62560 * 199.68810 * 20 19 18 44 44 H 1.08995 * 109.62755 * 320.27013 * 20 19 18 45 45 H 1.09000 * 108.88255 * 26.63595 * 21 20 19 46 46 H 1.09000 * 108.87218 * 145.07435 * 21 20 19 47 47 H 0.96699 * 114.00320 * 179.97438 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.7513 -2.1572 1.1379 6 6 2.1297 -2.6689 -0.1861 7 6 3.6200 -2.5382 -0.3682 8 1 4.2357 -2.1943 0.4496 9 6 4.1972 -2.8578 -1.5789 10 7 3.4472 -3.2763 -2.5749 11 14 6.0444 -2.6964 -1.8044 12 1 6.6566 -2.2096 -0.5420 13 1 6.6181 -4.0209 -2.1534 14 1 6.3274 -1.7310 -2.8967 15 6 0.3375 -2.4340 1.4249 16 1 -0.2814 -1.8057 0.7844 17 6 0.0563 -2.0899 2.8626 18 6 -1.3771 -1.5288 2.9605 19 6 -2.3848 -2.5790 2.9673 20 6 -2.3736 -3.4126 1.6695 21 6 -1.2571 -4.4177 1.7565 22 6 0.0438 -3.9119 1.1042 23 1 -0.0369 -4.0277 0.0233 24 8 1.1337 -4.7101 1.5701 25 1 -0.3634 -0.0298 1.0272 26 1 -0.3634 0.9044 -0.4879 27 1 -0.3633 -0.8748 -0.5395 28 1 1.8934 -0.5139 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.5413 -0.3177 2.1307 33 1 3.1159 -0.5727 1.3408 34 1 1.8446 -3.7180 -0.2653 35 1 1.6176 -2.0940 -0.9578 36 1 3.8533 -3.5008 -3.4267 37 1 0.1415 -2.9862 3.4770 38 1 0.7700 -1.3412 3.2063 39 1 -1.4668 -0.9478 3.8783 40 1 -1.5584 -0.8731 2.1089 41 1 -2.1995 -3.2406 3.8134 42 1 -3.3682 -2.1238 3.0842 43 1 -3.3257 -3.9316 1.5596 44 1 -2.2100 -2.7568 0.8144 45 1 -1.0625 -4.6388 2.8060 46 1 -1.5687 -5.3350 1.2569 47 1 1.0260 -5.6570 1.4062 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088762167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:55 Heat of formation + Delta-G solvation = -46.735820 kcal Electronic energy + Delta-G solvation = -23438.729679 eV Core-core repulsion = 20428.520998 eV Total energy + Delta-G solvation = -3010.208681 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 269.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.80683 -36.95649 -35.57930 -33.17342 -32.45862 -31.27840 -29.66837 -26.96802 -26.77166 -25.30951 -23.92196 -22.81884 -21.35823 -20.36583 -19.21606 -18.34583 -16.52446 -16.42548 -15.70606 -15.09319 -14.72446 -14.43362 -14.14623 -13.67420 -13.56360 -13.25922 -13.12826 -12.76204 -12.43781 -12.24704 -11.96684 -11.82944 -11.66474 -11.44654 -11.22914 -10.89683 -10.86163 -10.75016 -10.64230 -10.46861 -10.38085 -10.22016 -10.13086 -9.92086 -9.85442 -9.63399 -9.34110 -9.10927 -8.93139 -8.28071 -6.79373 -5.90858 -3.88655 3.36679 3.44265 3.49795 4.51710 4.70515 4.77757 4.93713 5.04836 5.18015 5.41159 5.44510 5.48810 5.50669 5.56720 5.59211 5.64289 5.67030 5.75615 5.88409 5.98743 6.04306 6.16167 6.20265 6.22484 6.23758 6.25892 6.30615 6.33615 6.35833 6.43329 6.48367 6.58927 6.61935 6.67413 6.78086 6.88379 7.01519 7.14579 7.57873 7.62671 7.97279 8.26063 8.38515 8.46204 8.79749 9.20017 9.74112 11.19945 Molecular weight = 269.21amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.006989 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.303098 B = 4005.573856 C = 4834.487809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C -0.136 4.136 4 C 0.071 3.929 5 N -0.517 5.517 6 C 0.186 3.814 7 C -0.490 4.490 8 H 0.059 0.941 9 C 0.053 3.947 10 N -0.903 5.903 11 Si 0.890 3.110 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.287 1.287 15 C 0.075 3.925 16 H 0.062 0.938 17 C -0.109 4.109 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.151 4.151 22 C 0.114 3.886 23 H 0.046 0.954 24 O -0.533 6.533 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.039 0.961 35 H -0.003 1.003 36 H 0.257 0.743 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.546 2.683 8.274 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.194 4.194 4 C -0.057 4.057 5 N -0.240 5.240 6 C 0.062 3.938 7 C -0.529 4.529 8 H 0.077 0.923 9 C -0.147 4.147 10 N -0.544 5.544 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.213 1.213 14 H -0.214 1.214 15 C -0.033 4.033 16 H 0.080 0.920 17 C -0.147 4.147 18 C -0.162 4.162 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.189 4.189 22 C 0.055 3.945 23 H 0.064 0.936 24 O -0.336 6.336 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.015 0.985 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -11.003 2.954 8.642 14.299 hybrid contribution 0.278 -0.156 -1.159 1.202 sum -10.725 2.798 7.483 13.373 Atomic orbital electron populations 1.22203 0.96990 1.00378 1.00986 1.21921 0.94565 0.96329 1.03463 1.21748 1.01050 0.96500 1.00080 1.22162 1.00829 0.88256 0.94455 1.62390 1.14996 1.12454 1.34117 1.19905 0.95838 0.95551 0.82554 1.21208 0.92523 1.42363 0.96757 0.92252 1.24928 0.97742 0.95955 0.96086 1.69963 1.34822 1.46609 1.03028 0.86558 0.86177 0.77490 0.77891 1.19791 1.21255 1.21371 1.21818 0.92442 0.92982 0.96105 0.92050 1.21455 0.94646 1.01296 0.97288 1.20586 0.95792 0.98270 1.01581 1.20474 0.98700 0.98115 0.97782 1.21259 0.97770 0.97941 0.98253 1.22146 0.96063 0.98634 1.02100 1.22280 0.84632 0.91403 0.96216 0.93568 1.86863 1.43138 1.19969 1.83585 0.92593 0.93801 0.92912 0.88089 0.92781 0.93757 0.93868 0.93026 0.91055 0.94335 0.98520 0.93343 0.91590 0.91048 0.92709 0.92130 0.92359 0.92886 0.92240 0.91599 0.91282 0.92627 0.79762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 7.80 37.16 0.29 -2.12 16 2 C -0.14 -2.67 2.43 -90.62 -0.22 -2.89 16 3 C -0.14 -2.19 8.99 37.16 0.33 -1.86 16 4 C 0.07 1.40 4.35 -3.82 -0.02 1.38 16 5 N -0.52 -11.09 4.14 -228.93 -0.95 -12.04 16 6 C 0.19 4.76 3.55 -4.97 -0.02 4.74 16 7 C -0.49 -13.80 8.31 -34.44 -0.29 -14.09 16 8 H 0.06 1.71 7.18 -52.49 -0.38 1.33 16 9 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 11 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C 0.08 1.33 0.91 -68.42 -0.06 1.26 16 16 H 0.06 1.07 2.24 -51.93 -0.12 0.95 16 17 C -0.11 -1.67 4.85 -27.34 -0.13 -1.81 16 18 C -0.12 -1.54 5.16 -29.60 -0.15 -1.69 16 19 C -0.11 -1.26 5.26 -29.59 -0.16 -1.42 16 20 C -0.11 -1.36 5.61 -27.34 -0.15 -1.51 16 21 C -0.15 -2.00 4.88 -27.43 -0.13 -2.14 16 22 C 0.11 1.97 2.21 -25.62 -0.06 1.92 16 23 H 0.05 0.89 7.19 -51.93 -0.37 0.52 16 24 O -0.53 -10.14 11.46 -35.23 -0.40 -10.54 16 25 H 0.06 0.83 4.48 -51.93 -0.23 0.60 16 26 H 0.04 0.64 7.79 -51.93 -0.40 0.23 16 27 H 0.05 0.91 6.70 -51.93 -0.35 0.57 16 28 H 0.10 2.33 5.44 -51.93 -0.28 2.05 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.90 5.54 -51.93 -0.29 0.61 16 33 H 0.07 1.53 7.25 -51.93 -0.38 1.15 16 34 H 0.04 1.06 5.23 -51.93 -0.27 0.79 16 35 H 0.00 -0.07 5.59 -51.93 -0.29 -0.36 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.07 1.06 6.98 -51.93 -0.36 0.69 16 38 H 0.07 1.15 5.76 -51.93 -0.30 0.85 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.76 5.61 -51.93 -0.29 0.47 16 41 H 0.06 0.64 7.47 -51.93 -0.39 0.25 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.85 6.97 -51.93 -0.36 0.48 16 45 H 0.07 0.91 6.63 -51.93 -0.34 0.57 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.36 5.33 9.04 45.56 0.41 5.74 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -30.43 327.91 -8.64 -39.08 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.09 Total: 6.42 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -0.86 Total: -18.81 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.21 Total: -38.16 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.40 Total: -10.54 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.43 -8.64 -39.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088762167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.660 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds