Wall clock time and date at job start Mon Mar 30 2020 06:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47220 * 2 1 4 4 C 1.52998 * 109.47064 * 120.00204 * 2 1 3 5 5 H 1.08995 * 109.47625 * 176.33201 * 4 2 1 6 6 C 1.53093 * 109.47885 * 296.35237 * 4 2 1 7 7 C 1.53179 * 109.16065 * 177.58314 * 6 4 2 8 8 C 1.53176 * 109.04297 * 303.03510 * 7 6 4 9 9 C 1.53092 * 109.16688 * 56.97652 * 8 7 6 10 10 O 1.42899 * 109.47889 * 56.30785 * 4 2 1 11 11 N 1.46901 * 109.46622 * 240.00247 * 2 1 3 12 12 C 1.46897 * 111.00439 * 45.54074 * 11 2 1 13 13 C 1.46906 * 110.99268 * 169.49192 * 11 2 1 14 14 C 1.53004 * 109.46786 * 167.56933 * 13 11 2 15 15 C 1.52999 * 109.46796 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.46775 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.46871 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00527 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99690 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00225 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00135 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47153 * 89.99738 * 21 19 17 23 23 H 1.48495 * 109.47425 * 209.99882 * 21 19 17 24 24 H 1.48507 * 109.46897 * 330.00086 * 21 19 17 25 25 H 1.09000 * 109.46759 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46753 * 299.99812 * 1 2 3 27 27 H 1.09000 * 109.46776 * 60.00140 * 1 2 3 28 28 H 1.09002 * 109.52033 * 297.49442 * 6 4 2 29 29 H 1.08995 * 109.52222 * 57.68797 * 6 4 2 30 30 H 1.08999 * 109.54394 * 183.16043 * 7 6 4 31 31 H 1.09005 * 109.61028 * 62.94528 * 7 6 4 32 32 H 1.08999 * 109.52643 * 297.07064 * 8 7 6 33 33 H 1.09004 * 109.57412 * 176.90982 * 8 7 6 34 34 H 1.08993 * 109.48414 * 182.40565 * 9 8 7 35 35 H 1.09004 * 109.48220 * 62.37071 * 9 8 7 36 36 H 1.09004 * 109.47273 * 177.30400 * 12 11 2 37 37 H 1.09000 * 109.46620 * 297.30288 * 12 11 2 38 38 H 1.09000 * 109.47271 * 57.30022 * 12 11 2 39 39 H 1.08998 * 109.47369 * 47.56412 * 13 11 2 40 40 H 1.09006 * 109.46934 * 287.56145 * 13 11 2 41 41 H 1.08998 * 109.47592 * 59.99616 * 14 13 11 42 42 H 1.09006 * 109.46740 * 299.99330 * 14 13 11 43 43 H 1.08998 * 109.47372 * 299.98795 * 15 14 13 44 44 H 1.08999 * 109.47676 * 60.00187 * 15 14 13 45 45 H 1.08994 * 109.47342 * 299.99942 * 16 15 14 46 46 H 1.09009 * 109.46857 * 60.00294 * 16 15 14 47 47 H 0.97003 * 119.99660 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1280 -0.7786 1.2170 6 6 1.6062 0.0513 2.4977 7 6 2.0682 -0.7085 3.7449 8 6 1.4907 -2.1268 3.7087 9 6 1.9292 -2.8151 2.4135 10 8 1.4943 -2.0412 1.2935 11 7 2.0196 -0.6925 -1.1995 12 6 1.2895 -0.2530 -2.3960 13 6 3.4665 -0.4992 -1.3651 14 6 3.9925 -1.4695 -2.4247 15 6 5.4995 -1.2687 -2.5967 16 6 6.0257 -2.2394 -3.6559 17 6 7.5099 -2.0412 -3.8258 18 1 8.0264 -1.2977 -3.2370 19 6 8.2086 -2.8093 -4.7331 20 7 7.5796 -3.7145 -5.4505 21 14 10.0485 -2.5642 -4.9432 22 1 10.7769 -3.4548 -4.0044 23 1 10.4355 -2.8932 -6.3386 24 1 10.3957 -1.1496 -4.6536 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.0577 1.0434 2.4873 29 1 0.5203 0.1443 2.5094 30 1 1.7141 -0.1933 4.6378 31 1 3.1570 -0.7585 3.7605 32 1 0.4024 -2.0780 3.7448 33 1 1.8585 -2.6928 4.5645 34 1 1.4860 -3.8095 2.3622 35 1 3.0158 -2.8999 2.3967 36 1 1.7038 -0.7455 -3.2758 37 1 0.2362 -0.5147 -2.2953 38 1 1.3867 0.8272 -2.5047 39 1 3.9693 -0.6891 -0.4169 40 1 3.6623 0.5253 -1.6815 41 1 3.4897 -1.2796 -3.3730 42 1 3.7967 -2.4941 -2.1083 43 1 5.6958 -0.2443 -2.9130 44 1 6.0021 -1.4590 -1.6484 45 1 5.8294 -3.2638 -3.3395 46 1 5.5232 -2.0495 -4.6045 47 1 8.0713 -4.2550 -6.0885 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706034412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:46 Heat of formation + Delta-G solvation = -71.752200 kcal Electronic energy + Delta-G solvation = -21441.031659 eV Core-core repulsion = 18429.738187 eV Total energy + Delta-G solvation = -3011.293473 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 269.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.89281 -37.69490 -34.64524 -33.70829 -32.83303 -31.70429 -29.63731 -27.98666 -26.87640 -24.84474 -24.29354 -23.27968 -21.31455 -20.54235 -19.93590 -19.67884 -16.39103 -16.17960 -16.06765 -15.95552 -15.19578 -14.79874 -14.60076 -14.44692 -14.19753 -13.87556 -13.33862 -12.91697 -12.78348 -12.57752 -12.38712 -12.21480 -11.96650 -11.67230 -11.60360 -11.46371 -11.32299 -11.09054 -10.99836 -10.92711 -10.68206 -10.44414 -10.41970 -10.38170 -10.06556 -9.53950 -9.40083 -9.20002 -8.95103 -8.28724 -8.10403 -5.93791 -3.95872 3.35074 3.40965 3.44452 3.73715 3.93409 4.50354 4.55052 4.64340 4.67458 4.82421 4.96971 4.98098 5.17669 5.22917 5.31840 5.40784 5.41506 5.45449 5.48488 5.59624 5.63443 5.65099 5.68116 5.71351 5.73427 5.79587 5.86846 5.95779 5.99363 6.06251 6.10617 6.23141 6.27590 6.35922 6.61449 6.90185 7.05817 7.15924 7.23116 7.29683 7.39302 7.76068 7.92954 8.07986 8.50704 9.11761 9.67651 11.17540 Molecular weight = 269.21amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.003384 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.411391 B = 8271.742218 C = 8888.571171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 H 0.048 0.952 4 C 0.100 3.900 5 H 0.059 0.941 6 C -0.152 4.152 7 C -0.122 4.122 8 C -0.156 4.156 9 C 0.058 3.942 10 O -0.355 6.355 11 N -0.529 5.529 12 C 0.021 3.979 13 C 0.054 3.946 14 C -0.111 4.111 15 C -0.109 4.109 16 C 0.022 3.978 17 C -0.519 4.519 18 H 0.053 0.947 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.068 0.932 40 H 0.028 0.972 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.045 0.955 45 H 0.016 0.984 46 H 0.014 0.986 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.823 7.542 17.051 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 H 0.066 0.934 4 C 0.042 3.958 5 H 0.076 0.924 6 C -0.191 4.191 7 C -0.159 4.159 8 C -0.194 4.194 9 C -0.019 4.019 10 O -0.274 6.274 11 N -0.253 5.253 12 C -0.127 4.127 13 C -0.073 4.073 14 C -0.149 4.149 15 C -0.147 4.147 16 C -0.015 4.015 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.033 0.967 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.016 6.846 16.827 24.218 hybrid contribution 1.463 1.037 -0.012 1.793 sum -14.553 7.882 16.815 23.594 Atomic orbital electron populations 1.21921 0.94055 1.03288 1.01112 1.21614 0.96115 0.94382 0.89847 0.93385 1.22079 0.97111 0.83473 0.93153 0.92350 1.22276 1.02351 0.99311 0.95114 1.21571 1.00779 0.95764 0.97820 1.22198 1.01661 0.96653 0.98849 1.22548 0.99001 0.94886 0.85477 1.88039 1.70114 1.24359 1.44854 1.61999 1.04209 1.57146 1.01948 1.22479 0.99199 0.97602 0.93410 1.22290 0.86835 0.97973 1.00223 1.21640 0.97034 0.99119 0.97109 1.21598 0.92461 1.00306 1.00343 1.19085 0.95284 0.94056 0.93123 1.21298 0.93786 1.19391 1.21293 0.92825 1.25037 0.98277 0.95338 0.95897 1.69977 1.35739 1.22805 1.25028 0.86620 0.85845 0.78423 0.77257 1.20700 1.21256 1.19938 0.90755 0.92502 0.92622 0.91195 0.90733 0.91707 0.91834 0.91267 0.91196 0.89039 0.93329 0.90767 0.91300 0.96213 0.91332 0.95370 0.92587 0.91660 0.93806 0.93639 0.96607 0.96745 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 7.98 37.16 0.30 -1.19 16 2 C 0.09 1.04 2.01 -67.71 -0.14 0.90 16 3 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 4 C 0.10 1.15 2.35 -26.68 -0.06 1.09 16 5 H 0.06 0.73 6.39 -51.93 -0.33 0.40 16 6 C -0.15 -1.36 5.20 -26.59 -0.14 -1.50 16 7 C -0.12 -1.00 6.03 -26.55 -0.16 -1.16 16 8 C -0.16 -1.29 6.14 -26.59 -0.16 -1.45 16 9 C 0.06 0.60 6.84 37.20 0.25 0.85 16 10 O -0.36 -4.57 9.51 -35.23 -0.34 -4.90 16 11 N -0.53 -7.38 4.54 -234.87 -1.07 -8.44 16 12 C 0.02 0.27 8.51 60.06 0.51 0.78 16 13 C 0.05 0.82 4.82 -3.82 -0.02 0.81 16 14 C -0.11 -2.02 5.20 -26.73 -0.14 -2.16 16 15 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 16 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 17 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 21 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H 0.07 0.86 7.59 -51.93 -0.39 0.47 16 26 H 0.06 0.49 6.48 -51.93 -0.34 0.16 16 27 H 0.05 0.53 6.39 -51.93 -0.33 0.19 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.65 6.42 -51.93 -0.33 0.31 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.00 6.31 -51.93 -0.33 0.68 16 37 H 0.07 0.78 6.39 -51.93 -0.33 0.45 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 1.03 6.21 -51.93 -0.32 0.71 16 40 H 0.03 0.42 8.10 -51.93 -0.42 0.00 16 41 H 0.06 1.02 6.51 -51.93 -0.34 0.68 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -31.31 354.69 -9.71 -41.01 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -8.92 Total: -4.16 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.44 Total: -19.03 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.33 Total: -35.34 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.34 Total: -4.90 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.31 -9.71 -41.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706034412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.738 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds