Wall clock time and date at job start Mon Mar 30 2020 07:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33643 * 124.41918 * 2 1 4 4 C 1.37976 * 115.09757 * 179.97438 * 3 2 1 5 5 O 1.35768 * 123.48139 * 179.97438 * 4 3 2 6 6 C 1.42903 * 116.99594 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47291 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99920 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47282 * 89.99593 * 13 11 9 15 15 H 1.48498 * 109.47211 * 210.00040 * 13 11 9 16 16 H 1.48506 * 109.46856 * 330.00220 * 13 11 9 17 17 C 1.37383 * 113.04082 * 0.24289 * 4 3 2 18 18 C 1.41477 * 125.48230 * 179.74967 * 17 4 3 19 19 O 1.21710 * 119.99861 * 0.02562 * 18 17 4 20 20 O 1.34980 * 120.00330 * 180.02562 * 18 17 4 21 21 S 1.70571 * 124.42366 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47197 * 90.00153 * 1 2 3 23 23 H 1.09008 * 109.46885 * 210.00034 * 1 2 3 24 24 H 1.09004 * 109.46961 * 329.99577 * 1 2 3 25 25 H 1.08001 * 122.44864 * 359.95541 * 3 2 1 26 26 H 1.09002 * 109.47382 * 60.00014 * 6 5 4 27 27 H 1.09001 * 109.46938 * 300.00000 * 6 5 4 28 28 H 1.09001 * 109.47194 * 299.99575 * 7 6 5 29 29 H 1.08992 * 109.47399 * 59.99748 * 7 6 5 30 30 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 31 31 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 32 32 H 0.97000 * 119.99425 * 180.02562 * 12 11 9 33 33 H 0.96700 * 113.99700 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2624 1.1025 0.0000 4 6 3.6239 0.8790 0.0006 5 8 4.5465 1.8751 0.0001 6 6 4.0530 3.2162 -0.0004 7 6 5.2307 4.1929 -0.0014 8 6 4.7024 5.6288 -0.0013 9 6 5.8623 6.5908 -0.0017 10 1 6.8751 6.2156 -0.0016 11 6 5.6308 7.9500 -0.0023 12 7 4.3975 8.4069 -0.0029 13 14 7.0686 9.1425 -0.0035 14 1 7.4491 9.4579 -1.4040 15 1 6.6759 10.3921 0.6961 16 1 8.2240 8.5255 0.6963 17 6 3.9498 -0.4557 -0.0043 18 6 5.2637 -0.9802 -0.0101 19 8 6.2196 -0.2269 -0.0104 20 8 5.4572 -2.3160 -0.0151 21 16 2.4712 -1.4070 0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.8381 2.0956 -0.0007 26 1 3.4453 3.3802 0.8896 27 1 3.4453 3.3794 -0.8904 28 1 5.8388 4.0298 0.8884 29 1 5.8380 4.0288 -0.8915 30 1 4.0942 5.7922 -0.8910 31 1 4.0953 5.7926 0.8890 32 1 4.2346 9.3631 -0.0037 33 1 6.3878 -2.5786 -0.0183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069976708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:12 Heat of formation + Delta-G solvation = -116.941322 kcal Electronic energy + Delta-G solvation = -17684.012850 eV Core-core repulsion = 14608.294755 eV Total energy + Delta-G solvation = -3075.718095 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46256 -39.39140 -36.62804 -35.86405 -34.03629 -32.29075 -31.33581 -28.23154 -26.99936 -23.94803 -23.07313 -22.42600 -20.27453 -19.28291 -18.72124 -17.58013 -16.51810 -16.22242 -16.18600 -15.73058 -15.38329 -14.46744 -14.24012 -14.18362 -13.85545 -13.35996 -13.26329 -12.58580 -12.45666 -12.05629 -12.01186 -11.66943 -11.44989 -11.15369 -11.00721 -10.62407 -10.60951 -10.57975 -10.42741 -9.77333 -9.54454 -9.17294 -8.93591 -8.39134 -8.10425 -6.04633 -4.06861 0.26149 1.27833 1.64136 2.13453 3.04424 3.28265 3.31651 3.37496 3.41249 3.50032 4.33678 4.44716 4.87669 5.01272 5.15775 5.17137 5.31821 5.46225 5.51346 5.55303 5.69418 5.70029 5.91949 6.09986 6.43109 6.54266 6.63746 6.97512 7.41313 7.58901 7.69358 7.94152 7.95683 8.36135 8.99274 9.57627 11.06941 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026574 B = 0.003740 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.392775 B = 7484.000804 C = 8506.336163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.154 4.154 3 C -0.226 4.226 4 C 0.226 3.774 5 O -0.270 6.270 6 C 0.052 3.948 7 C -0.108 4.108 8 C 0.026 3.974 9 C -0.521 4.521 10 H 0.058 0.942 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.346 4.346 18 C 0.554 3.446 19 O -0.497 6.497 20 O -0.516 6.516 21 S 0.241 5.759 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.156 0.844 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 -21.513 -0.017 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.274 4.274 3 C -0.259 4.259 4 C 0.164 3.836 5 O -0.180 6.180 6 C -0.022 4.022 7 C -0.146 4.146 8 C -0.011 4.011 9 C -0.559 4.559 10 H 0.076 0.924 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.463 4.463 18 C 0.399 3.601 19 O -0.387 6.387 20 O -0.327 6.327 21 S 0.507 5.493 22 H 0.103 0.897 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.174 0.826 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -8.868 -22.561 -0.007 24.242 hybrid contribution 1.376 2.341 -0.020 2.716 sum -7.493 -20.220 -0.027 21.563 Atomic orbital electron populations 1.20512 0.86832 1.03984 1.03611 1.24179 1.01943 0.98515 1.02748 1.20113 0.91788 1.01373 1.12639 1.18374 0.88414 0.87787 0.89011 1.86360 1.31854 1.14970 1.84842 1.23432 0.99942 0.77616 1.01204 1.21736 0.95428 0.95013 1.02399 1.19048 0.96869 0.87728 0.97495 1.21192 0.92968 0.90941 1.50770 0.92383 1.25014 0.95750 0.98481 0.95154 1.69961 1.19082 1.13740 1.50790 0.86544 0.82624 0.80404 0.78173 1.20591 1.21186 1.19757 1.21378 0.96551 0.94698 1.33718 1.17793 0.88257 0.80345 0.73701 1.91045 1.42310 1.59090 1.46300 1.85007 1.35741 1.24750 1.87248 1.82993 0.91419 1.04970 1.69940 0.89737 0.90633 0.89769 0.82621 0.91908 0.91920 0.91956 0.91955 0.96300 0.96292 0.92934 0.73455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.31 36.01 0.37 -0.22 16 2 C -0.15 -1.56 6.27 -35.92 -0.23 -1.78 16 3 C -0.23 -2.86 9.02 -41.29 -0.37 -3.23 16 4 C 0.23 3.57 6.70 -39.99 -0.27 3.30 16 5 O -0.27 -5.04 9.00 -36.56 -0.33 -5.37 16 6 C 0.05 0.94 4.87 37.16 0.18 1.12 16 7 C -0.11 -2.33 5.52 -26.73 -0.15 -2.48 16 8 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 9 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 10 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 13 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.35 -5.08 6.28 -38.66 -0.24 -5.33 16 18 C 0.55 8.46 8.08 31.97 0.26 8.72 16 19 O -0.50 -9.48 16.57 -25.55 -0.42 -9.90 16 20 O -0.52 -5.69 13.30 -41.26 -0.55 -6.24 16 21 S 0.24 2.50 22.76 -107.50 -2.45 0.05 16 22 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.16 1.80 6.99 -52.49 -0.37 1.43 16 26 H 0.06 1.04 7.88 -51.93 -0.41 0.63 16 27 H 0.06 1.04 7.88 -51.93 -0.41 0.63 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 33 H 0.41 2.71 8.98 45.56 0.41 3.12 16 LS Contribution 307.14 15.07 4.63 4.63 Total: -1.00 -34.17 307.14 -7.68 -41.84 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -3.28 Total: -2.77 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -1.00 Total: -13.00 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -1.30 Total: -21.51 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.45 Total: 0.05 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.17 -7.68 -41.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069976708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.098 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds