Wall clock time and date at job start Mon Mar 30 2020 07:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33643 * 124.41918 * 2 1 4 4 C 1.37976 * 115.09757 * 179.97438 * 3 2 1 5 5 O 1.35768 * 123.48139 * 179.97438 * 4 3 2 6 6 C 1.42903 * 116.99594 * 0.02562 * 5 4 3 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47291 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99920 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47282 * 89.99593 * 13 11 9 15 15 H 1.48498 * 109.47211 * 210.00040 * 13 11 9 16 16 H 1.48506 * 109.46856 * 330.00220 * 13 11 9 17 17 C 1.37383 * 113.04082 * 0.24289 * 4 3 2 18 18 C 1.41477 * 125.48230 * 179.74967 * 17 4 3 19 19 O 1.21710 * 119.99861 * 0.02562 * 18 17 4 20 20 O 1.34980 * 120.00330 * 180.02562 * 18 17 4 21 21 S 1.70571 * 124.42366 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47197 * 90.00153 * 1 2 3 23 23 H 1.09008 * 109.46885 * 210.00034 * 1 2 3 24 24 H 1.09004 * 109.46961 * 329.99577 * 1 2 3 25 25 H 1.08001 * 122.44864 * 359.95541 * 3 2 1 26 26 H 1.09002 * 109.47382 * 60.00014 * 6 5 4 27 27 H 1.09001 * 109.46938 * 300.00000 * 6 5 4 28 28 H 1.09001 * 109.47194 * 299.99575 * 7 6 5 29 29 H 1.08992 * 109.47399 * 59.99748 * 7 6 5 30 30 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 31 31 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 32 32 H 0.97000 * 119.99425 * 180.02562 * 12 11 9 33 33 H 0.96700 * 113.99700 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2624 1.1025 0.0000 4 6 3.6239 0.8790 0.0006 5 8 4.5465 1.8751 0.0001 6 6 4.0530 3.2162 -0.0004 7 6 5.2307 4.1929 -0.0014 8 6 4.7024 5.6288 -0.0013 9 6 5.8623 6.5908 -0.0017 10 1 6.8751 6.2156 -0.0016 11 6 5.6308 7.9500 -0.0023 12 7 4.3975 8.4069 -0.0029 13 14 7.0686 9.1425 -0.0035 14 1 7.4491 9.4579 -1.4040 15 1 6.6759 10.3921 0.6961 16 1 8.2240 8.5255 0.6963 17 6 3.9498 -0.4557 -0.0043 18 6 5.2637 -0.9802 -0.0101 19 8 6.2196 -0.2269 -0.0104 20 8 5.4572 -2.3160 -0.0151 21 16 2.4712 -1.4070 0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.8381 2.0956 -0.0007 26 1 3.4453 3.3802 0.8896 27 1 3.4453 3.3794 -0.8904 28 1 5.8388 4.0298 0.8884 29 1 5.8380 4.0288 -0.8915 30 1 4.0942 5.7922 -0.8910 31 1 4.0953 5.7926 0.8890 32 1 4.2346 9.3631 -0.0037 33 1 6.3878 -2.5786 -0.0183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069976708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:11 Heat of formation + Delta-G solvation = -139.053007 kcal Electronic energy + Delta-G solvation = -17684.971684 eV Core-core repulsion = 14608.294755 eV Total energy + Delta-G solvation = -3076.676929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.59816 -40.54979 -37.74940 -36.95609 -35.95205 -33.83952 -32.70996 -29.17910 -28.78618 -25.53934 -24.22583 -23.60071 -22.06142 -20.36231 -19.76536 -18.79571 -18.42902 -17.48605 -17.36565 -16.90057 -16.62764 -16.47757 -15.29946 -15.27198 -14.77735 -14.53062 -14.47376 -14.21614 -13.83043 -13.25350 -13.20730 -13.09374 -12.80648 -12.56446 -12.50212 -12.27860 -12.08674 -11.94671 -11.67076 -11.57987 -11.48204 -11.27121 -10.58357 -9.86888 -9.09725 -8.24107 -6.34658 -0.73183 0.36336 0.71151 1.11108 1.39603 1.40546 1.52131 1.92056 2.21901 2.31335 2.41881 3.09701 3.51803 3.96366 3.97694 4.02718 4.23281 4.37235 4.46353 4.60596 4.73214 4.76233 4.85703 4.92329 5.03774 5.12653 5.20310 5.44661 5.50588 5.62401 5.77948 6.11926 6.23795 6.79455 6.93407 7.34418 8.87817 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026574 B = 0.003740 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.392775 B = 7484.000804 C = 8506.336163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.136 4.136 3 C -0.251 4.251 4 C 0.200 3.800 5 O -0.299 6.299 6 C 0.066 3.934 7 C -0.098 4.098 8 C 0.032 3.968 9 C -0.549 4.549 10 H 0.056 0.944 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.965 3.035 14 H -0.271 1.271 15 H -0.278 1.278 16 H -0.267 1.267 17 C -0.385 4.385 18 C 0.556 3.444 19 O -0.549 6.549 20 O -0.501 6.501 21 S 0.317 5.683 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.161 0.839 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.004 0.996 31 H 0.004 0.996 32 H 0.266 0.734 33 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 -22.941 -0.040 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.257 4.257 3 C -0.282 4.282 4 C 0.138 3.862 5 O -0.211 6.211 6 C -0.009 4.009 7 C -0.135 4.135 8 C -0.005 4.005 9 C -0.587 4.587 10 H 0.074 0.926 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.789 3.211 14 H -0.197 1.197 15 H -0.203 1.203 16 H -0.192 1.192 17 C -0.502 4.502 18 C 0.403 3.597 19 O -0.443 6.443 20 O -0.314 6.314 21 S 0.583 5.417 22 H 0.120 0.880 23 H 0.116 0.884 24 H 0.110 0.890 25 H 0.179 0.821 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.075 0.925 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -10.184 -24.044 -0.031 26.112 hybrid contribution 1.675 2.585 -0.015 3.080 sum -8.509 -21.459 -0.046 23.084 Atomic orbital electron populations 1.20740 0.83826 1.05540 1.05143 1.24724 1.03850 0.97803 0.99284 1.20131 0.90609 1.02639 1.14846 1.18779 0.89345 0.87457 0.90571 1.86261 1.33554 1.15307 1.86003 1.23099 0.97996 0.77412 1.02374 1.21441 0.96586 0.93981 1.01526 1.18889 0.95818 0.89876 0.95910 1.21612 0.93669 0.92155 1.51236 0.92618 1.25906 0.98645 1.00306 0.94459 1.70067 1.21113 1.14412 1.51262 0.85454 0.79109 0.77963 0.78580 1.19677 1.20292 1.19162 1.21803 0.98468 0.95437 1.34480 1.18003 0.88131 0.81036 0.72497 1.91015 1.43923 1.60451 1.48921 1.84954 1.37644 1.22386 1.86369 1.82678 0.88089 1.03273 1.67672 0.87961 0.88365 0.88969 0.82106 0.90733 0.90747 0.92810 0.92786 0.97773 0.97767 0.92540 0.71195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.31 71.24 0.73 -0.12 16 2 C -0.14 -2.37 6.27 24.64 0.15 -2.22 16 3 C -0.25 -6.06 9.02 21.16 0.19 -5.87 16 4 C 0.20 6.36 6.70 22.01 0.15 6.51 16 5 O -0.30 -11.59 9.00 -74.17 -0.67 -12.26 16 6 C 0.07 2.42 4.87 71.98 0.35 2.77 16 7 C -0.10 -4.37 5.52 30.59 0.17 -4.20 16 8 C 0.03 1.71 4.97 29.85 0.15 1.86 16 9 C -0.55 -32.01 9.11 25.60 0.23 -31.77 16 10 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 11 C 0.01 0.30 5.46 84.65 0.46 0.76 16 12 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 13 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 C -0.39 -11.11 6.28 22.87 0.14 -10.96 16 18 C 0.56 17.03 8.08 68.62 0.55 17.59 16 19 O -0.55 -21.73 16.57 25.00 0.41 -21.31 16 20 O -0.50 -10.41 13.30 -58.98 -0.78 -11.19 16 21 S 0.32 5.67 22.76 -56.49 -1.29 4.38 16 22 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.16 3.59 6.99 -2.91 -0.02 3.57 16 26 H 0.07 2.51 7.88 -2.39 -0.02 2.50 16 27 H 0.07 2.51 7.88 -2.39 -0.02 2.49 16 28 H 0.05 2.45 8.14 -2.39 -0.02 2.44 16 29 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.43 5.16 8.98 -74.06 -0.67 4.50 16 Total: -1.00 -75.62 307.14 3.74 -71.87 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: 0.47 Total: 3.03 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 3.29 Total: -25.67 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.28 Total: -55.71 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -1.04 Total: -44.76 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -1.29 Total: 4.38 kcal Total: -75.62 3.74 -71.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069976708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.180 kcal (2) G-P(sol) polarization free energy of solvation -75.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds