Wall clock time and date at job start Mon Mar 30 2020 07:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38267 * 119.97419 * 2 1 4 4 C 1.38172 * 120.02673 * 180.02562 * 3 2 1 5 5 C 1.38479 * 119.97341 * 359.97438 * 4 3 2 6 6 F 1.35099 * 120.02945 * 179.97438 * 5 4 3 7 7 C 1.38445 * 119.94912 * 0.02562 * 5 4 3 8 8 C 1.50694 * 120.01153 * 179.72597 * 7 5 4 9 9 S 1.81397 * 109.47304 * 89.99896 * 8 7 5 10 10 O 1.42094 * 109.46894 * 296.38381 * 9 8 7 11 11 C 1.81402 * 102.99933 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.47365 * 179.97438 * 11 9 8 13 13 C 1.50694 * 109.47614 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99719 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00556 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00498 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99821 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47203 * 90.00149 * 17 15 13 19 19 H 1.48504 * 109.47345 * 210.00533 * 17 15 13 20 20 H 1.48508 * 109.46990 * 330.00354 * 17 15 13 21 21 C 1.38215 * 119.97015 * 359.97438 * 7 5 4 22 22 H 1.09003 * 109.47259 * 90.00015 * 1 2 3 23 23 H 1.08999 * 109.47401 * 210.00318 * 1 2 3 24 24 H 1.09003 * 109.47072 * 329.99976 * 1 2 3 25 25 H 1.08003 * 119.98952 * 359.97438 * 3 2 1 26 26 H 1.08003 * 120.01712 * 179.97438 * 4 3 2 27 27 H 1.09005 * 109.46755 * 209.99730 * 8 7 5 28 28 H 1.08999 * 109.47677 * 329.99603 * 8 7 5 29 29 H 1.09005 * 109.47517 * 300.00022 * 11 9 8 30 30 H 1.09003 * 109.47113 * 60.00047 * 11 9 8 31 31 H 1.08997 * 109.47231 * 300.00561 * 12 11 9 32 32 H 1.09003 * 109.46831 * 60.00040 * 12 11 9 33 33 H 0.97000 * 120.00432 * 179.97438 * 16 15 13 34 34 H 1.08001 * 119.98427 * 179.97438 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1990 -0.0005 5 6 4.2725 0.0001 -0.0005 6 9 5.6235 0.0000 -0.0016 7 6 3.5798 -1.1986 -0.0005 8 6 4.3324 -2.5041 -0.0068 9 16 4.6415 -3.0321 1.7009 10 8 5.4825 -2.0847 2.3446 11 6 5.5402 -4.5935 1.4889 12 6 5.8807 -5.1765 2.8619 13 6 6.6279 -6.4733 2.6859 14 1 6.8384 -6.8448 1.6938 15 6 7.0418 -7.1861 3.7911 16 7 7.6942 -8.3176 3.6374 17 14 6.6771 -6.5439 5.5069 18 1 5.3673 -7.0725 5.9653 19 1 7.7441 -6.9886 6.4391 20 1 6.6300 -5.0598 5.4803 21 6 2.1976 -1.1973 0.0000 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6572 2.1327 -0.0004 26 1 4.1190 2.1347 -0.0010 27 1 3.7406 -3.2622 -0.5200 28 1 5.2827 -2.3733 -0.5243 29 1 4.9179 -5.2992 0.9384 30 1 6.4603 -4.4107 0.9339 31 1 6.5032 -4.4708 3.4120 32 1 4.9608 -5.3592 3.4173 33 1 7.9858 -8.8188 4.4150 34 1 1.6570 -2.1322 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417200725.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:46 Heat of formation + Delta-G solvation = -74.221948 kcal Electronic energy + Delta-G solvation = -17730.062829 eV Core-core repulsion = 14668.569975 eV Total energy + Delta-G solvation = -3061.492854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.84135 -39.41633 -35.24824 -33.71898 -33.52099 -32.16900 -31.24648 -27.67381 -26.65963 -25.55198 -22.74617 -21.31941 -20.52688 -17.65061 -17.27728 -16.81863 -16.72299 -15.72414 -15.41819 -14.75829 -14.50756 -14.22729 -14.06240 -14.02089 -13.83049 -13.53316 -13.28868 -13.01407 -12.64921 -12.28457 -12.05264 -11.81193 -11.67849 -11.41421 -11.16895 -11.05327 -10.67363 -10.26931 -9.97268 -9.70814 -9.34631 -8.91158 -8.58617 -8.52394 -7.77408 -6.08899 -4.08438 0.89055 1.01998 1.95939 3.01749 3.28940 3.37604 3.42164 3.43964 4.10703 4.20157 4.42424 4.46525 4.54200 4.61716 4.96957 4.98063 5.21457 5.24277 5.33852 5.36602 5.54345 5.62164 5.80448 5.83664 5.92965 5.95992 6.02404 6.11631 6.28840 6.58981 6.74317 7.04761 7.19638 7.68568 8.47300 8.94008 9.52162 11.04091 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.033253 B = 0.004069 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.816104 B = 6880.250912 C = 7105.551949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.099 4.099 4 C -0.148 4.148 5 C 0.098 3.902 6 F -0.134 7.134 7 C -0.086 4.086 8 C -0.418 4.418 9 S 1.218 4.782 10 O -0.840 6.840 11 C -0.409 4.409 12 C 0.004 3.996 13 C -0.518 4.518 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.873 3.127 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.263 1.263 21 C -0.091 4.091 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.130 0.870 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.264 0.736 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.544 16.456 -8.599 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.167 4.167 5 C 0.077 3.923 6 F -0.112 7.112 7 C -0.088 4.088 8 C -0.551 4.551 9 S 1.419 4.581 10 O -0.835 6.835 11 C -0.549 4.549 12 C -0.035 4.035 13 C -0.558 4.558 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.700 3.300 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.187 1.187 21 C -0.110 4.110 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.640 16.791 -7.680 25.536 hybrid contribution 2.305 0.418 -0.344 2.368 sum -15.335 17.209 -8.024 24.406 Atomic orbital electron populations 1.20782 0.90516 1.03175 1.02451 1.19942 0.96533 0.92799 1.00406 1.20861 0.92874 0.98103 0.99911 1.21111 0.95109 0.96879 1.03623 1.17651 0.77232 0.94264 1.03115 1.91523 1.28785 1.97312 1.93576 1.19246 0.94190 0.92365 1.02978 1.26776 1.05216 1.00158 1.22952 1.70510 1.14503 0.87987 0.85082 1.93124 1.71119 1.57083 1.62159 1.27450 1.09025 1.11952 1.06458 1.19244 0.97091 0.97295 0.89884 1.21025 1.35801 1.03891 0.95050 0.90851 1.25009 0.94477 0.94602 0.99244 1.69899 1.38732 1.14790 1.30535 0.86862 0.78464 0.80239 0.84447 1.19767 1.21107 1.18738 1.20864 0.91859 0.98623 0.99637 0.91084 0.91002 0.91450 0.85161 0.84826 0.85217 0.88562 0.87024 0.90243 0.95940 0.95854 0.92576 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.10 -0.84 5.88 -104.62 -0.62 -1.46 16 3 C -0.10 -0.90 9.70 -39.60 -0.38 -1.29 16 4 C -0.15 -1.70 10.03 -39.52 -0.40 -2.10 16 5 C 0.10 1.41 7.24 -39.42 -0.29 1.13 16 6 F -0.13 -2.32 16.48 2.25 0.04 -2.28 16 7 C -0.09 -1.10 5.15 -104.56 -0.54 -1.63 16 8 C -0.42 -5.34 5.87 36.00 0.21 -5.13 16 9 S 1.22 19.07 13.14 -107.50 -1.41 17.65 16 10 O -0.84 -18.60 18.14 -35.23 -0.64 -19.24 16 11 C -0.41 -7.75 5.86 37.16 0.22 -7.53 16 12 C 0.00 0.09 4.05 -27.89 -0.11 -0.03 16 13 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 14 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 17 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 21 C -0.09 -0.87 9.35 -39.60 -0.37 -1.24 16 22 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 24 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 25 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 26 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 27 H 0.13 1.16 8.08 -51.92 -0.42 0.74 16 28 H 0.10 1.39 7.64 -51.92 -0.40 0.99 16 29 H 0.11 1.79 8.14 -51.92 -0.42 1.37 16 30 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 31 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 32 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -37.48 309.78 -8.13 -45.61 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -4.55 Total: -3.64 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: -2.34 Total: -32.85 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.77 Total: -27.09 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.64 Total: -19.24 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Atomic # 16 Polarization: 19.07 SS G_CDS: -1.41 Total: 17.65 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -37.48 -8.13 -45.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417200725.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.615 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds