Wall clock time and date at job start Mon Mar 30 2020 06:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.38390 * 119.99576 * 2 1 4 4 N 1.32506 * 119.18313 * 359.97438 * 3 2 1 5 5 C 1.32474 * 120.94071 * 180.02562 * 4 3 2 6 6 C 1.38173 * 119.28186 * 359.72174 * 5 4 3 7 7 C 1.39635 * 118.48699 * 0.55866 * 6 5 4 8 8 N 1.38632 * 120.48617 * 179.71123 * 7 6 5 9 9 C 1.38966 * 119.99626 * 352.07858 * 8 7 6 10 10 C 1.39554 * 119.84633 * 317.87728 * 9 8 7 11 11 C 1.36336 * 120.16522 * 180.25511 * 10 9 8 12 12 C 1.40898 * 119.83381 * 359.52304 * 11 10 9 13 13 C 1.41118 * 120.15801 * 180.23059 * 12 11 10 14 14 H 1.08004 * 119.99519 * 29.78953 * 13 12 11 15 15 C 1.39863 * 120.00148 * 209.78370 * 13 12 11 16 16 N 1.30894 * 120.00040 * 9.28589 * 15 13 12 17 17 Si 1.86803 * 120.00273 * 189.28714 * 15 13 12 18 18 H 1.48497 * 109.47176 * 89.99835 * 17 15 13 19 19 H 1.48502 * 109.47242 * 210.00097 * 17 15 13 20 20 H 1.48505 * 109.46639 * 330.00024 * 17 15 13 21 21 C 1.40892 * 119.68141 * 0.45521 * 12 11 10 22 22 C 1.36339 * 119.83769 * 359.77325 * 21 12 11 23 23 N 1.32430 * 119.17388 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.46737 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47038 * 300.00124 * 1 2 3 26 26 H 1.08999 * 109.46839 * 60.00342 * 1 2 3 27 27 H 0.96998 * 119.99730 * 179.97438 * 2 1 3 28 28 H 1.07996 * 120.35952 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.75406 * 180.27805 * 6 5 4 30 30 H 0.96996 * 119.99809 * 172.08206 * 8 7 6 31 31 H 1.08000 * 119.91466 * 359.97438 * 10 9 8 32 32 H 1.07992 * 120.08344 * 179.72273 * 11 10 9 33 33 H 0.97002 * 120.00549 * 179.97438 * 16 15 13 34 34 H 1.08002 * 120.07995 * 179.75657 * 21 12 11 35 35 H 1.07995 * 119.91565 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1570 1.1985 0.0000 4 7 1.4781 2.3365 -0.0005 5 6 2.1048 3.5035 -0.0010 6 6 3.4863 3.5287 0.0048 7 6 4.1746 2.3138 -0.0009 8 7 5.5607 2.2907 -0.0014 9 6 6.2752 3.4718 -0.1621 10 6 5.8601 4.4115 -1.1066 11 6 6.5592 5.5701 -1.2734 12 6 7.6975 5.8219 -0.4821 13 6 8.4234 7.0210 -0.6456 14 1 7.9176 7.9183 -0.9705 15 6 9.7976 7.0475 -0.3868 16 7 10.4445 5.9303 -0.1709 17 14 10.7098 8.6772 -0.3494 18 1 10.6912 9.2233 1.0314 19 1 12.1155 8.4677 -0.7799 20 1 10.0478 9.6362 -1.2700 21 6 8.1103 4.8687 0.4697 22 6 7.4042 3.7125 0.6222 23 7 3.4811 1.1795 0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.9501 -0.8401 0.0004 28 1 1.5421 4.4253 -0.0019 29 1 4.0216 4.4668 0.0090 30 1 6.0318 1.4502 0.1104 31 1 4.9855 4.2185 -1.7102 32 1 6.2394 6.2944 -2.0078 33 1 11.3977 5.9485 0.0082 34 1 8.9842 5.0534 1.0769 35 1 7.7197 2.9808 1.3511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132595708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:55 Heat of formation + Delta-G solvation = 70.749401 kcal Electronic energy + Delta-G solvation = -19197.356128 eV Core-core repulsion = 16194.751559 eV Total energy + Delta-G solvation = -3002.604569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.84690 -39.93947 -37.57376 -36.22068 -35.12223 -33.68407 -31.88996 -30.88867 -30.41985 -27.41841 -26.52469 -24.98841 -23.55365 -22.79470 -22.07378 -19.33149 -19.27810 -18.97262 -17.51900 -16.99434 -16.69515 -16.29136 -16.18128 -15.53941 -15.48625 -15.27735 -14.57015 -14.38526 -14.33142 -13.95550 -13.69697 -13.38838 -12.93160 -12.87864 -12.72150 -12.46698 -12.30562 -11.79583 -11.58019 -11.46599 -11.36429 -11.09045 -10.06266 -10.02368 -9.49450 -9.05633 -8.59345 -8.50644 -6.28323 0.38630 0.43301 0.99826 1.10818 1.42116 1.51903 1.54894 1.85466 2.23505 2.48231 2.73898 3.12610 3.55831 3.69370 3.96450 4.21322 4.36188 4.40541 4.55042 4.64089 4.76768 4.82154 4.96245 5.03092 5.11654 5.14864 5.26438 5.36614 5.52067 5.65558 5.86484 5.92204 6.07868 6.27369 6.32482 6.41591 6.51626 6.66601 6.85437 6.94525 7.05304 7.57609 8.37554 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.057215 B = 0.003502 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.262411 B = 7993.005500 C = 8334.802493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.702 5.702 3 C 0.576 3.424 4 N -0.616 5.616 5 C 0.209 3.791 6 C -0.350 4.350 7 C 0.458 3.542 8 N -0.630 5.630 9 C 0.024 3.976 10 C -0.097 4.097 11 C -0.213 4.213 12 C 0.076 3.924 13 C -0.491 4.491 14 H 0.078 0.922 15 C 0.031 3.969 16 N -0.833 5.833 17 Si 0.984 3.016 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.259 1.259 21 C -0.161 4.161 22 C -0.113 4.113 23 N -0.646 5.646 24 H 0.106 0.894 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.418 0.582 28 H 0.195 0.805 29 H 0.142 0.858 30 H 0.409 0.591 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.287 0.713 34 H 0.109 0.891 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.157 -6.725 1.001 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.340 5.340 3 C 0.217 3.783 4 N -0.344 5.344 5 C 0.047 3.953 6 C -0.380 4.380 7 C 0.213 3.787 8 N -0.254 5.254 9 C -0.070 4.070 10 C -0.117 4.117 11 C -0.233 4.233 12 C 0.073 3.927 13 C -0.521 4.521 14 H 0.096 0.904 15 C -0.182 4.182 16 N -0.459 5.459 17 Si 0.805 3.195 18 H -0.188 1.188 19 H -0.196 1.196 20 H -0.182 1.182 21 C -0.181 4.181 22 C -0.134 4.134 23 N -0.381 5.381 24 H 0.125 0.875 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.255 0.745 28 H 0.212 0.788 29 H 0.160 0.840 30 H 0.245 0.755 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.584 -7.504 1.020 14.687 hybrid contribution 1.708 0.679 0.032 1.838 sum -10.876 -6.826 1.053 12.883 Atomic orbital electron populations 1.21581 0.76501 1.03605 1.01590 1.43954 1.07288 1.03171 1.79627 1.19320 0.83947 0.87943 0.87070 1.67984 1.40277 0.97804 1.28380 1.23068 0.90664 0.95926 0.85655 1.22274 0.96958 0.98839 1.19907 1.18387 0.85254 0.89108 0.85907 1.41330 1.01117 1.08753 1.74201 1.17073 0.97491 0.89734 1.02717 1.20420 0.99709 0.94794 0.96791 1.20851 1.00567 0.98761 1.03080 1.17999 0.91466 0.93486 0.89713 1.19798 0.93824 0.96966 1.41515 0.90352 1.26720 0.98594 1.01337 0.91576 1.69859 1.10828 1.29481 1.35777 0.85167 0.77244 0.77451 0.79647 1.18770 1.19593 1.18246 1.20962 1.01295 0.95372 1.00503 1.20509 0.96373 0.97754 0.98717 1.67167 1.08189 1.30249 1.32448 0.87525 0.93058 0.93067 0.74507 0.78830 0.84038 0.75453 0.87006 0.87522 0.90281 0.87301 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.76 10.68 127.77 1.36 3.12 16 2 N -0.70 -15.77 5.86 -372.62 -2.18 -17.96 16 3 C 0.58 17.75 8.42 261.52 2.20 19.96 16 4 N -0.62 -18.64 9.58 -198.25 -1.90 -20.54 16 5 C 0.21 6.03 11.29 84.58 0.95 6.99 16 6 C -0.35 -11.78 8.10 22.59 0.18 -11.60 16 7 C 0.46 16.44 7.45 133.15 0.99 17.43 16 8 N -0.63 -22.95 5.43 -184.70 -1.00 -23.95 16 9 C 0.02 1.00 5.87 38.65 0.23 1.22 16 10 C -0.10 -4.08 7.30 22.14 0.16 -3.92 16 11 C -0.21 -9.86 9.74 22.48 0.22 -9.64 16 12 C 0.08 3.91 5.55 -21.27 -0.12 3.79 16 13 C -0.49 -25.38 9.04 23.37 0.21 -25.17 16 14 H 0.08 3.88 7.86 -2.91 -0.02 3.86 16 15 C 0.03 1.53 5.27 85.23 0.45 1.98 16 16 N -0.83 -42.31 10.81 21.81 0.24 -42.08 16 17 Si 0.98 37.22 29.57 68.60 2.03 39.25 16 18 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 19 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 20 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 21 C -0.16 -8.08 8.60 22.48 0.19 -7.89 16 22 C -0.11 -4.99 9.90 22.15 0.22 -4.77 16 23 N -0.65 -22.03 10.49 -195.49 -2.05 -24.08 16 24 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.42 7.91 8.94 -92.71 -0.83 7.08 16 28 H 0.19 4.06 8.06 -2.91 -0.02 4.03 16 29 H 0.14 5.03 5.52 -2.91 -0.02 5.02 16 30 H 0.41 13.57 8.94 -92.71 -0.83 12.74 16 31 H 0.11 4.35 6.68 -2.91 -0.02 4.33 16 32 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 33 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 34 H 0.11 5.75 6.21 -2.91 -0.02 5.73 16 35 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -59.79 301.33 1.88 -57.91 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: -0.51 Total: 39.94 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 7.26 Total: -8.50 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -6.90 Total: -128.61 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -59.79 1.88 -57.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132595708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.662 kcal (2) G-P(sol) polarization free energy of solvation -59.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds