Wall clock time and date at job start Mon Mar 30 2020 06:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37759 * 126.28236 * 2 1 4 4 C 1.39408 * 133.74295 * 359.97438 * 3 2 1 5 5 C 1.36109 * 120.28382 * 179.97438 * 4 3 2 6 6 C 1.41117 * 120.36761 * 0.02562 * 5 4 3 7 7 C 1.41323 * 120.01457 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99956 * 24.67665 * 7 6 5 9 9 C 1.39881 * 119.99960 * 204.68007 * 7 6 5 10 10 N 1.30876 * 119.99922 * 17.89930 * 9 7 6 11 11 Si 1.86796 * 119.99912 * 197.89413 * 9 7 6 12 12 H 1.48504 * 109.46916 * 90.00166 * 11 9 7 13 13 H 1.48496 * 109.47600 * 210.00249 * 11 9 7 14 14 H 1.48508 * 109.47296 * 330.00470 * 11 9 7 15 15 C 1.40328 * 119.97559 * 359.82327 * 6 5 4 16 16 C 1.39138 * 119.41912 * 0.37217 * 15 6 5 17 17 N 1.35935 * 133.44740 * 179.97438 * 16 15 6 18 18 C 1.30066 * 109.54247 * 179.70944 * 17 16 15 19 19 C 1.50704 * 124.91195 * 179.97438 * 18 17 16 20 20 C 1.54267 * 110.02873 * 57.91651 * 19 18 17 21 21 C 1.54965 * 104.15571 * 217.13257 * 20 19 18 22 22 C 1.54888 * 102.78115 * 37.88680 * 21 20 19 23 23 C 1.53869 * 110.03656 * 300.69609 * 19 18 17 24 24 H 1.09005 * 109.46712 * 90.02632 * 1 2 3 25 25 H 1.08996 * 109.47279 * 210.02532 * 1 2 3 26 26 H 1.09001 * 109.47688 * 330.02615 * 1 2 3 27 27 H 1.07997 * 119.85760 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.81468 * 180.02562 * 5 4 3 29 29 H 0.97007 * 120.00083 * 179.97438 * 10 9 7 30 30 H 1.07996 * 120.28895 * 180.02562 * 15 6 5 31 31 H 1.08999 * 110.01426 * 179.30089 * 19 18 17 32 32 H 1.08997 * 110.48641 * 335.77726 * 20 19 18 33 33 H 1.08993 * 110.49025 * 98.42369 * 20 19 18 34 34 H 1.09003 * 110.72335 * 279.56952 * 21 20 19 35 35 H 1.09004 * 110.76450 * 156.22244 * 21 20 19 36 36 H 1.08998 * 110.48772 * 203.40394 * 22 21 20 37 37 H 1.09004 * 110.59839 * 80.81521 * 22 21 20 38 38 H 1.08998 * 110.03285 * 238.57364 * 23 19 18 39 39 H 1.09006 * 110.03146 * 359.94908 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2802 1.1105 0.0000 4 6 2.0387 2.4835 -0.0005 5 6 3.0774 3.3631 0.0002 6 6 4.4087 2.8950 0.0008 7 6 5.4815 3.8149 0.0021 8 1 5.3380 4.8113 0.3930 9 6 6.7293 3.4348 -0.5032 10 7 6.8286 2.3877 -1.2820 11 14 8.2538 4.4218 -0.0663 12 1 8.8636 3.8694 1.1700 13 1 9.2326 4.3401 -1.1801 14 1 7.8774 5.8406 0.1588 15 6 4.6669 1.5156 0.0045 16 6 3.6013 0.6209 -0.0004 17 7 3.5201 -0.7361 0.0008 18 6 2.2706 -1.0971 0.0005 19 6 1.7850 -2.5238 0.0010 20 6 2.3431 -3.2714 1.2296 21 6 2.6391 -4.6983 0.7027 22 6 3.1765 -4.4316 -0.7253 23 6 2.3142 -3.2612 -1.2414 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 1.0231 2.8508 -0.0013 28 1 2.8817 4.4252 0.0003 29 1 7.6938 2.1243 -1.6327 30 1 5.6837 1.1518 0.0054 31 1 0.6953 -2.5470 0.0131 32 1 3.2593 -2.7970 1.5811 33 1 1.5998 -3.3046 2.0261 34 1 1.7266 -5.2934 0.6672 35 1 3.3966 -5.1871 1.3154 36 1 3.0412 -5.3115 -1.3543 37 1 4.2277 -4.1454 -0.6922 38 1 1.4814 -3.6430 -1.8320 39 1 2.9216 -2.5869 -1.8453 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082607921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:02 Heat of formation + Delta-G solvation = 48.895110 kcal Electronic energy + Delta-G solvation = -20280.749606 eV Core-core repulsion = 17380.737708 eV Total energy + Delta-G solvation = -2900.011898 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.01197 -37.82503 -36.10015 -33.27262 -33.19545 -30.05239 -29.01286 -28.55443 -27.42407 -26.42974 -24.60628 -21.86037 -20.69310 -20.43799 -20.01367 -18.53602 -17.27919 -16.35948 -15.93014 -15.26887 -15.03765 -14.86687 -14.55026 -13.61426 -13.19937 -13.02567 -12.91851 -12.64605 -12.46281 -12.26784 -11.76674 -11.46415 -11.25814 -11.09075 -11.01975 -10.97880 -10.95778 -10.64751 -10.54598 -10.39916 -10.10689 -9.87581 -9.83268 -9.22356 -8.96367 -8.68248 -7.08740 -6.78545 -6.60428 -4.19513 2.31365 2.87360 3.15654 3.18516 3.27322 3.50038 3.87406 4.03780 4.59039 4.70955 4.80034 4.84787 5.09181 5.22668 5.34683 5.46466 5.56701 5.62200 5.67401 5.69769 5.74989 5.78158 5.82177 5.99512 6.01318 6.16132 6.16994 6.36144 6.50139 6.51723 6.61990 6.88835 6.94445 7.03108 7.27620 7.50000 7.71326 7.94708 8.11042 8.15690 8.33067 8.58108 8.96574 9.00796 9.15192 10.34061 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022715 B = 0.005125 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.384798 B = 5462.082913 C = 6390.757561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.500 5.500 3 C -0.043 4.043 4 C -0.107 4.107 5 C -0.160 4.160 6 C 0.095 3.905 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.793 5.793 11 Si 0.905 3.095 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.264 1.264 15 C -0.139 4.139 16 C 0.075 3.925 17 N -0.498 5.498 18 C 0.255 3.745 19 C -0.007 4.007 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.111 4.111 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.279 0.721 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 -9.619 1.838 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.195 5.195 3 C -0.147 4.147 4 C -0.129 4.129 5 C -0.180 4.180 6 C 0.091 3.909 7 C -0.496 4.496 8 H 0.095 0.905 9 C -0.141 4.141 10 N -0.419 5.419 11 Si 0.730 3.270 12 H -0.194 1.194 13 H -0.205 1.205 14 H -0.188 1.188 15 C -0.161 4.161 16 C -0.040 4.040 17 N -0.219 5.219 18 C -0.010 4.010 19 C -0.027 4.027 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.149 4.149 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.143 0.857 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.857 -10.203 1.683 13.615 hybrid contribution -0.191 1.109 0.013 1.126 sum -9.048 -9.093 1.696 12.939 Atomic orbital electron populations 1.21641 0.78861 1.03000 1.01912 1.44595 1.05327 1.05600 1.64008 1.18611 0.90876 0.88455 1.16725 1.19150 0.97588 0.89036 1.07077 1.20751 0.92776 0.97265 1.07250 1.17323 0.91301 0.91942 0.90362 1.19398 0.94005 0.99411 1.36775 0.90487 1.25836 1.00514 0.95066 0.92732 1.69861 1.26375 1.23255 1.22404 0.86369 0.80872 0.80771 0.78979 1.19385 1.20479 1.18783 1.20407 0.96335 0.90739 1.08666 1.19010 0.92385 0.88714 1.03898 1.70250 1.16351 1.12440 1.22888 1.23037 0.86343 0.89293 1.02308 1.20193 0.98983 0.86667 0.96883 1.22438 1.01848 0.94942 0.95869 1.22482 1.00442 0.96452 0.96570 1.22316 1.00382 0.97265 0.95810 1.22134 0.99307 0.97131 0.96356 0.92268 0.90925 0.90759 0.89310 0.87898 0.91009 0.85697 0.90412 0.89895 0.91970 0.91867 0.91551 0.92060 0.90973 0.92024 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 10.80 59.85 0.65 1.86 16 2 N -0.50 -9.81 3.20 -118.29 -0.38 -10.19 16 3 C -0.04 -1.02 6.88 -83.76 -0.58 -1.59 16 4 C -0.11 -2.43 9.96 -39.91 -0.40 -2.83 16 5 C -0.16 -3.91 9.71 -39.26 -0.38 -4.29 16 6 C 0.09 2.59 5.57 -106.85 -0.60 2.00 16 7 C -0.47 -12.55 9.03 -37.79 -0.34 -12.89 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 9 C 0.08 1.97 5.13 -17.34 -0.09 1.88 16 10 N -0.79 -21.55 10.97 55.54 0.61 -20.94 16 11 Si 0.91 19.25 29.59 -169.99 -5.03 14.22 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 14 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 15 C -0.14 -3.91 8.74 -38.46 -0.34 -4.25 16 16 C 0.07 1.97 7.21 -84.71 -0.61 1.36 16 17 N -0.50 -11.93 10.96 -8.24 -0.09 -12.02 16 18 C 0.25 5.03 6.11 -154.79 -0.95 4.08 16 19 C -0.01 -0.10 3.26 -90.65 -0.30 -0.39 16 20 C -0.11 -1.50 6.36 -25.03 -0.16 -1.66 16 21 C -0.12 -1.33 6.91 -24.70 -0.17 -1.50 16 22 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 23 C -0.11 -1.51 6.44 -25.62 -0.17 -1.68 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.78 7.00 -51.93 -0.36 0.42 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 30 H 0.13 3.71 6.16 -52.49 -0.32 3.39 16 31 H 0.08 0.93 6.69 -51.93 -0.35 0.59 16 32 H 0.08 1.34 7.63 -51.93 -0.40 0.95 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.25 7.63 -51.93 -0.40 0.86 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -31.09 317.56 -10.30 -41.39 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.60 Total: 4.28 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -4.59 Total: -21.53 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.14 Total: -43.15 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.09 -10.30 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082607921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.286 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds