Wall clock time and date at job start Mon Mar 30 2020 07:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.42902 * 114.00370 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.50684 * 29.90874 * 4 3 2 6 6 C 1.53178 * 109.50801 * 269.76706 * 4 3 2 7 7 O 1.42914 * 109.35048 * 296.80004 * 6 4 3 8 8 C 1.42911 * 114.15076 * 298.35306 * 7 6 4 9 9 C 1.53178 * 109.35244 * 61.64680 * 8 7 6 10 10 C 1.52634 * 109.24615 * 303.26901 * 9 8 7 11 11 C 1.54502 * 109.75090 * 176.59916 * 10 9 8 12 12 C 1.55384 * 100.88584 * 83.46536 * 11 10 9 13 13 C 1.54421 * 102.30090 * 33.65830 * 12 11 10 14 14 C 1.52999 * 109.83229 * 98.24270 * 13 12 11 15 15 C 1.50701 * 109.83784 * 219.13570 * 13 12 11 16 16 H 1.08004 * 119.99704 * 0.02562 * 15 13 12 17 17 C 1.37873 * 120.00258 * 179.97438 * 15 13 12 18 18 N 1.31513 * 119.99654 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00175 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46989 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47229 * 120.00096 * 19 17 15 22 22 H 1.48503 * 109.46970 * 240.00364 * 19 17 15 23 23 O 1.43102 * 110.59665 * 292.89113 * 10 9 8 24 24 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 119.99957 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99586 * 2 1 3 29 29 H 1.09002 * 109.49274 * 56.77112 * 6 4 3 30 30 H 1.08999 * 109.48814 * 176.83698 * 6 4 3 31 31 H 1.08997 * 109.49179 * 301.68387 * 8 7 6 32 32 H 1.09007 * 109.51427 * 181.62472 * 8 7 6 33 33 H 1.09002 * 109.51108 * 183.33554 * 9 8 7 34 34 H 1.09004 * 109.50843 * 63.20182 * 9 8 7 35 35 H 1.09002 * 111.13519 * 201.36604 * 11 10 9 36 36 H 1.08994 * 111.13626 * 325.55866 * 11 10 9 37 37 H 1.09000 * 110.84094 * 151.86173 * 12 11 10 38 38 H 1.09004 * 110.83967 * 275.25682 * 12 11 10 39 39 H 1.09006 * 109.46843 * 60.00617 * 14 13 12 40 40 H 1.09002 * 109.47167 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47568 * 300.00665 * 14 13 12 42 42 H 0.96998 * 119.99713 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8643 0.6009 -0.5114 6 6 3.9398 1.5065 1.4446 7 8 3.4306 2.6763 2.0887 8 6 3.8487 3.9035 1.4876 9 6 3.3359 3.9630 0.0455 10 6 3.8410 2.7422 -0.7189 11 6 3.2607 2.7458 -2.1508 12 6 4.2619 3.6912 -2.8707 13 6 5.5890 3.3787 -2.1457 14 6 6.4123 2.3897 -2.9734 15 6 6.3719 4.6500 -1.9413 16 1 5.9729 5.5916 -2.2888 17 6 7.5969 4.6114 -1.3098 18 7 8.0824 3.4649 -0.8863 19 14 8.5669 6.1874 -1.0559 20 1 7.8076 7.3323 -1.6198 21 1 8.7859 6.4053 0.3965 22 1 9.8787 6.0775 -1.7433 23 8 5.2623 2.7991 -0.8757 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.5992 0.6196 1.9790 30 1 5.0294 1.5359 1.4455 31 1 4.9374 3.9568 1.4889 32 1 3.4429 4.7426 2.0528 33 1 3.7028 4.8704 -0.4343 34 1 2.2458 3.9664 0.0466 35 1 3.2816 1.7466 -2.5858 36 1 2.2517 3.1577 -2.1649 37 1 4.3322 3.4469 -3.9307 38 1 3.9776 4.7345 -2.7330 39 1 6.6288 2.8246 -3.9492 40 1 7.3474 2.1736 -2.4568 41 1 5.8473 1.4667 -3.1043 42 1 8.9444 3.4377 -0.4423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686594607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:31 Heat of formation + Delta-G solvation = -140.019789 kcal Electronic energy + Delta-G solvation = -23255.381305 eV Core-core repulsion = 20007.575771 eV Total energy + Delta-G solvation = -3247.805534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.166 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.95679 -37.62813 -36.71542 -33.31093 -31.68030 -31.15495 -30.86759 -29.38934 -27.91905 -25.36250 -24.19926 -22.96062 -22.67925 -21.29569 -19.77785 -18.73220 -16.46719 -16.34238 -15.98060 -15.76727 -15.17886 -14.73464 -14.56170 -14.19119 -13.92894 -13.51726 -13.10300 -12.72602 -12.39189 -12.30364 -12.10495 -11.74599 -11.56306 -11.47867 -11.19708 -11.09897 -10.94137 -10.88085 -10.71100 -10.63337 -10.45482 -10.13412 -10.01671 -9.88853 -9.59868 -9.35119 -9.06569 -8.56929 -8.46395 -7.91388 -5.97031 -4.12971 3.27492 3.36762 3.39603 3.77483 4.40771 4.46348 4.93144 5.10087 5.14525 5.32477 5.35421 5.42997 5.44245 5.46768 5.58836 5.70898 5.80830 5.90308 5.95358 5.96636 6.09275 6.12024 6.14911 6.23453 6.32012 6.42028 6.49070 6.58313 6.70962 6.72344 6.79067 6.90001 6.92910 7.10741 7.33961 7.54023 7.77710 7.81970 8.08029 8.35413 8.61122 9.02380 9.58312 11.04533 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025984 B = 0.006733 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.319472 B = 4157.608314 C = 4583.996667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.367 6.367 4 C 0.069 3.931 5 H 0.067 0.933 6 C 0.049 3.951 7 O -0.383 6.383 8 C 0.066 3.934 9 C -0.149 4.149 10 C 0.112 3.888 11 C -0.137 4.137 12 C -0.141 4.141 13 C 0.230 3.770 14 C -0.139 4.139 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.082 3.918 18 N -0.861 5.861 19 Si 0.885 3.115 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 O -0.338 6.338 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.090 0.910 41 H 0.010 0.990 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.208 -5.239 1.116 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.287 6.287 4 C 0.010 3.990 5 H 0.085 0.915 6 C -0.028 4.028 7 O -0.302 6.302 8 C -0.010 4.010 9 C -0.187 4.187 10 C 0.071 3.929 11 C -0.175 4.175 12 C -0.179 4.179 13 C 0.193 3.807 14 C -0.196 4.196 15 C -0.567 4.567 16 H 0.077 0.923 17 C -0.123 4.123 18 N -0.497 5.497 19 Si 0.712 3.288 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 O -0.257 6.257 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.109 0.891 41 H 0.029 0.971 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.135 -5.238 1.505 11.507 hybrid contribution 0.771 0.644 -0.284 1.044 sum -9.364 -4.593 1.222 10.501 Atomic orbital electron populations 1.21706 0.94102 1.01691 1.03011 1.22449 0.95284 0.84777 0.99587 1.87920 1.20560 1.25204 1.94995 1.22646 0.80945 0.98786 0.96579 0.91470 1.22948 0.99025 0.88329 0.92543 1.87804 1.73872 1.13903 1.54604 1.22499 0.99936 0.85609 0.92957 1.22346 1.00189 0.99624 0.96570 1.21431 0.86174 0.91680 0.93580 1.23069 0.99020 0.99699 0.95689 1.23249 0.96680 0.98823 0.99167 1.19694 0.89391 0.91565 0.80058 1.21979 1.03033 0.96120 0.98508 1.21285 1.02895 0.92765 1.39736 0.92341 1.24975 0.97147 0.95700 0.94470 1.69952 1.18222 1.24118 1.37434 0.86675 0.80035 0.84108 0.77952 1.19768 1.20924 1.21017 1.88673 1.14644 1.82881 1.39534 0.92027 0.91912 0.91580 0.93823 0.93815 0.90137 0.91156 0.91791 0.90058 0.90169 0.91574 0.92139 0.91471 0.92338 0.91741 0.94541 0.89119 0.97112 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.16 0.38 -1.20 16 2 C 0.06 0.73 6.47 37.16 0.24 0.97 16 3 O -0.37 -6.13 9.12 -41.90 -0.38 -6.51 16 4 C 0.07 1.24 2.11 -26.83 -0.06 1.18 16 5 H 0.07 1.19 7.79 -51.93 -0.40 0.79 16 6 C 0.05 0.88 6.39 37.25 0.24 1.12 16 7 O -0.38 -7.42 10.70 -41.90 -0.45 -7.87 16 8 C 0.07 1.28 6.75 37.25 0.25 1.53 16 9 C -0.15 -2.90 4.85 -26.83 -0.13 -3.03 16 10 C 0.11 2.26 0.50 -90.21 -0.04 2.22 16 11 C -0.14 -2.57 5.60 -24.68 -0.14 -2.71 16 12 C -0.14 -2.92 5.70 -24.72 -0.14 -3.06 16 13 C 0.23 5.55 0.82 -91.03 -0.07 5.48 16 14 C -0.14 -3.31 8.51 37.16 0.32 -2.99 16 15 C -0.53 -14.04 8.22 -34.44 -0.28 -14.32 16 16 H 0.06 1.55 7.52 -52.48 -0.39 1.15 16 17 C 0.08 2.21 5.26 -17.82 -0.09 2.11 16 18 N -0.86 -23.95 10.92 55.43 0.61 -23.34 16 19 Si 0.88 20.79 29.54 -169.99 -5.02 15.77 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 O -0.34 -8.16 9.03 -35.23 -0.32 -8.48 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.53 7.84 -51.93 -0.41 0.12 16 28 H 0.04 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.08 1.25 7.84 -51.93 -0.41 0.84 16 30 H 0.07 1.38 8.00 -51.93 -0.42 0.97 16 31 H 0.06 1.38 8.00 -51.93 -0.42 0.97 16 32 H 0.08 1.37 8.14 -51.92 -0.42 0.94 16 33 H 0.08 1.64 7.65 -51.93 -0.40 1.24 16 34 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 35 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 36 H 0.07 1.17 7.98 -51.93 -0.41 0.75 16 37 H 0.06 1.13 7.82 -51.93 -0.41 0.72 16 38 H 0.06 1.33 7.43 -51.93 -0.39 0.94 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 2.40 6.01 -51.93 -0.31 2.09 16 41 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -28.73 327.17 -7.45 -36.18 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.28 Total: 2.03 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 0.47 Total: -12.71 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.61 Total: -23.34 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -1.15 Total: -22.86 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.73 -7.45 -36.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686594607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.840 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds