Wall clock time and date at job start Mon Mar 30 2020 07:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.42902 * 114.00370 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.50684 * 29.90874 * 4 3 2 6 6 C 1.53178 * 109.50801 * 269.76706 * 4 3 2 7 7 O 1.42914 * 109.35048 * 296.80004 * 6 4 3 8 8 C 1.42911 * 114.15076 * 298.35306 * 7 6 4 9 9 C 1.53178 * 109.35244 * 61.64680 * 8 7 6 10 10 C 1.52634 * 109.24615 * 303.26901 * 9 8 7 11 11 C 1.54502 * 109.75090 * 176.59916 * 10 9 8 12 12 C 1.55384 * 100.88584 * 83.46536 * 11 10 9 13 13 C 1.54421 * 102.30090 * 33.65830 * 12 11 10 14 14 C 1.52999 * 109.83229 * 98.24270 * 13 12 11 15 15 C 1.50701 * 109.83784 * 219.13570 * 13 12 11 16 16 H 1.08004 * 119.99704 * 0.02562 * 15 13 12 17 17 C 1.37873 * 120.00258 * 179.97438 * 15 13 12 18 18 N 1.31513 * 119.99654 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00175 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46989 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47229 * 120.00096 * 19 17 15 22 22 H 1.48503 * 109.46970 * 240.00364 * 19 17 15 23 23 O 1.43102 * 110.59665 * 292.89113 * 10 9 8 24 24 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 119.99957 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99586 * 2 1 3 29 29 H 1.09002 * 109.49274 * 56.77112 * 6 4 3 30 30 H 1.08999 * 109.48814 * 176.83698 * 6 4 3 31 31 H 1.08997 * 109.49179 * 301.68387 * 8 7 6 32 32 H 1.09007 * 109.51427 * 181.62472 * 8 7 6 33 33 H 1.09002 * 109.51108 * 183.33554 * 9 8 7 34 34 H 1.09004 * 109.50843 * 63.20182 * 9 8 7 35 35 H 1.09002 * 111.13519 * 201.36604 * 11 10 9 36 36 H 1.08994 * 111.13626 * 325.55866 * 11 10 9 37 37 H 1.09000 * 110.84094 * 151.86173 * 12 11 10 38 38 H 1.09004 * 110.83967 * 275.25682 * 12 11 10 39 39 H 1.09006 * 109.46843 * 60.00617 * 14 13 12 40 40 H 1.09002 * 109.47167 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47568 * 300.00665 * 14 13 12 42 42 H 0.96998 * 119.99713 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8643 0.6009 -0.5114 6 6 3.9398 1.5065 1.4446 7 8 3.4306 2.6763 2.0887 8 6 3.8487 3.9035 1.4876 9 6 3.3359 3.9630 0.0455 10 6 3.8410 2.7422 -0.7189 11 6 3.2607 2.7458 -2.1508 12 6 4.2619 3.6912 -2.8707 13 6 5.5890 3.3787 -2.1457 14 6 6.4123 2.3897 -2.9734 15 6 6.3719 4.6500 -1.9413 16 1 5.9729 5.5916 -2.2888 17 6 7.5969 4.6114 -1.3098 18 7 8.0824 3.4649 -0.8863 19 14 8.5669 6.1874 -1.0559 20 1 7.8076 7.3323 -1.6198 21 1 8.7859 6.4053 0.3965 22 1 9.8787 6.0775 -1.7433 23 8 5.2623 2.7991 -0.8757 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.5992 0.6196 1.9790 30 1 5.0294 1.5359 1.4455 31 1 4.9374 3.9568 1.4889 32 1 3.4429 4.7426 2.0528 33 1 3.7028 4.8704 -0.4343 34 1 2.2458 3.9664 0.0466 35 1 3.2816 1.7466 -2.5858 36 1 2.2517 3.1577 -2.1649 37 1 4.3322 3.4469 -3.9307 38 1 3.9776 4.7345 -2.7330 39 1 6.6288 2.8246 -3.9492 40 1 7.3474 2.1736 -2.4568 41 1 5.8473 1.4667 -3.1043 42 1 8.9444 3.4377 -0.4423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686594607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:30 Heat of formation + Delta-G solvation = -157.229137 kcal Electronic energy + Delta-G solvation = -23256.127558 eV Core-core repulsion = 20007.575771 eV Total energy + Delta-G solvation = -3248.551787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.166 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50072 -39.17440 -38.07645 -35.15823 -33.21218 -32.83691 -32.26518 -30.77845 -29.54881 -27.33975 -25.83768 -24.45849 -23.74167 -22.81688 -21.48120 -20.36536 -18.40660 -17.66631 -17.48245 -17.08933 -16.72536 -16.53115 -16.08329 -15.55934 -15.41071 -15.30140 -14.48151 -14.26850 -14.00305 -13.76891 -13.46345 -13.15603 -13.07733 -12.88860 -12.85595 -12.76271 -12.56236 -12.40452 -12.28976 -12.23136 -12.10911 -11.89473 -11.70652 -11.34743 -11.15318 -10.93559 -10.80386 -10.53584 -9.96835 -9.72947 -7.99914 -6.21517 1.39379 1.43338 1.52252 2.44430 2.47865 2.98343 3.21944 3.58507 3.70594 3.90169 3.96581 4.02763 4.21619 4.30015 4.35959 4.37717 4.48534 4.50023 4.53062 4.61734 4.64614 4.74090 4.86409 4.89942 4.93630 4.98707 5.02426 5.09285 5.10865 5.17669 5.17783 5.28385 5.32372 5.39175 5.55375 5.73016 6.13252 6.15494 6.37470 6.41581 6.69781 7.14815 7.53592 9.00247 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025984 B = 0.006733 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.319472 B = 4157.608314 C = 4583.996667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 O -0.378 6.378 4 C 0.078 3.922 5 H 0.069 0.931 6 C 0.047 3.953 7 O -0.387 6.387 8 C 0.070 3.930 9 C -0.143 4.143 10 C 0.099 3.901 11 C -0.124 4.124 12 C -0.136 4.136 13 C 0.218 3.782 14 C -0.132 4.132 15 C -0.543 4.543 16 H 0.052 0.948 17 C 0.038 3.962 18 N -0.887 5.887 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.280 1.280 23 O -0.363 6.363 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.030 0.970 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 -5.663 0.962 13.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 O -0.297 6.297 4 C 0.020 3.980 5 H 0.087 0.913 6 C -0.030 4.030 7 O -0.306 6.306 8 C -0.007 4.007 9 C -0.181 4.181 10 C 0.059 3.941 11 C -0.162 4.162 12 C -0.174 4.174 13 C 0.181 3.819 14 C -0.190 4.190 15 C -0.580 4.580 16 H 0.070 0.930 17 C -0.164 4.164 18 N -0.525 5.525 19 Si 0.767 3.233 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.206 1.206 23 O -0.283 6.283 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.953 -5.663 1.345 13.295 hybrid contribution 1.278 0.724 -0.224 1.486 sum -10.676 -4.938 1.121 11.816 Atomic orbital electron populations 1.21712 0.92275 1.03326 1.02682 1.22760 0.96732 0.83135 1.00470 1.87900 1.19112 1.27682 1.95038 1.22381 0.82105 0.97620 0.95925 0.91310 1.23028 0.97692 0.88886 0.93361 1.87794 1.73714 1.14142 1.54925 1.22463 0.98023 0.86593 0.93605 1.22274 1.00809 0.98749 0.96297 1.21682 0.84466 0.93072 0.94919 1.23005 0.99186 0.99743 0.94266 1.23144 0.95401 0.99122 0.99747 1.19740 0.90881 0.90685 0.80627 1.21863 1.01849 0.96984 0.98275 1.21602 1.03411 0.93647 1.39373 0.92992 1.25611 0.98152 0.98130 0.94513 1.70084 1.18420 1.25679 1.38297 0.85802 0.78854 0.81161 0.77519 1.19235 1.21171 1.20628 1.88614 1.17331 1.82861 1.39494 0.92216 0.92355 0.88995 0.92904 0.92992 0.87337 0.93610 0.95112 0.87626 0.91708 0.90136 0.91269 0.89705 0.90987 0.92146 0.94089 0.92103 0.95509 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 10.28 71.98 0.74 -1.86 16 2 C 0.05 1.04 6.47 71.98 0.47 1.51 16 3 O -0.38 -11.64 9.12 -142.60 -1.30 -12.94 16 4 C 0.08 2.71 2.11 30.53 0.06 2.77 16 5 H 0.07 2.34 7.79 -2.39 -0.02 2.32 16 6 C 0.05 1.67 6.39 72.04 0.46 2.13 16 7 O -0.39 -14.60 10.70 -142.60 -1.53 -16.12 16 8 C 0.07 2.66 6.75 72.04 0.49 3.14 16 9 C -0.14 -5.45 4.85 30.53 0.15 -5.30 16 10 C 0.10 3.90 0.50 -10.53 -0.01 3.89 16 11 C -0.12 -4.41 5.60 31.92 0.18 -4.23 16 12 C -0.14 -5.46 5.70 31.90 0.18 -5.28 16 13 C 0.22 10.53 0.82 -11.06 -0.01 10.52 16 14 C -0.13 -6.30 8.51 71.98 0.61 -5.69 16 15 C -0.54 -29.09 8.22 25.60 0.21 -28.88 16 16 H 0.05 2.77 7.52 -2.91 -0.02 2.75 16 17 C 0.04 2.08 5.26 84.65 0.45 2.53 16 18 N -0.89 -50.56 10.92 21.45 0.23 -50.32 16 19 Si 0.94 43.26 29.54 68.60 2.03 45.29 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 O -0.36 -17.68 9.03 -148.98 -1.35 -19.03 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.05 1.12 7.84 -2.39 -0.02 1.10 16 28 H 0.05 1.12 8.09 -2.39 -0.02 1.10 16 29 H 0.11 3.15 7.84 -2.39 -0.02 3.14 16 30 H 0.05 1.83 8.00 -2.39 -0.02 1.81 16 31 H 0.03 1.36 8.00 -2.39 -0.02 1.35 16 32 H 0.11 3.43 8.14 -2.38 -0.02 3.42 16 33 H 0.06 2.64 7.65 -2.39 -0.02 2.62 16 34 H 0.08 2.81 7.93 -2.38 -0.02 2.79 16 35 H 0.07 2.32 8.03 -2.39 -0.02 2.31 16 36 H 0.08 2.71 7.98 -2.39 -0.02 2.69 16 37 H 0.07 2.64 7.82 -2.39 -0.02 2.62 16 38 H 0.06 2.43 7.43 -2.39 -0.02 2.42 16 39 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.06 3.28 6.01 -2.39 -0.01 3.26 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -61.31 327.17 3.04 -58.27 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.97 Total: 19.62 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 3.98 Total: -24.75 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.23 Total: -50.32 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -4.17 Total: -48.09 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -61.31 3.04 -58.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686594607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.963 kcal (2) G-P(sol) polarization free energy of solvation -61.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds