Wall clock time and date at job start Mon Mar 30 2020 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30915 * 1 3 3 Si 1.86799 * 119.99639 * 2 1 4 4 H 1.48505 * 109.47022 * 269.99984 * 3 2 1 5 5 H 1.48497 * 109.47294 * 29.99661 * 3 2 1 6 6 H 1.48502 * 109.47286 * 149.99957 * 3 2 1 7 7 C 1.39837 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99953 * 162.37007 * 7 2 1 9 9 C 1.40893 * 120.00234 * 342.37816 * 7 2 1 10 10 C 1.41258 * 120.01418 * 154.50965 * 9 7 2 11 11 C 1.35753 * 120.32657 * 179.97438 * 10 9 7 12 12 C 1.40582 * 120.15170 * 0.05239 * 11 10 9 13 13 N 1.34471 * 133.25113 * 179.97438 * 12 11 10 14 14 C 1.31657 * 108.99910 * 180.02562 * 13 12 11 15 15 C 1.46511 * 125.02155 * 180.02562 * 14 13 12 16 16 C 1.36810 * 125.46223 * 359.97294 * 15 14 13 17 17 C 1.37564 * 113.24569 * 180.02562 * 16 15 14 18 18 C 1.33789 * 115.09947 * 359.97438 * 17 16 15 19 19 S 1.70612 * 110.99668 * 359.72557 * 18 17 16 20 20 O 1.34791 * 109.95366 * 359.97438 * 14 13 12 21 21 C 1.35331 * 107.87019 * 0.02562 * 20 14 13 22 22 C 1.37592 * 133.61459 * 180.02562 * 21 20 14 23 23 H 0.96993 * 120.00294 * 359.97438 * 1 2 3 24 24 H 1.07994 * 119.83832 * 0.05822 * 10 9 7 25 25 H 1.08005 * 119.92471 * 180.34026 * 11 10 9 26 26 H 1.07996 * 123.38150 * 0.03547 * 16 15 14 27 27 H 1.07994 * 122.44884 * 180.02562 * 17 16 15 28 28 H 1.08002 * 124.50188 * 179.97438 * 18 17 16 29 29 H 1.07999 * 120.20243 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0465 -1.4001 5 1 1.4404 2.6527 0.6999 6 1 3.5406 1.4403 0.7000 7 6 2.0084 -1.2110 0.0005 8 1 3.0503 -1.2331 -0.2827 9 6 1.3536 -2.4024 0.3705 10 6 1.8209 -3.6449 -0.1126 11 6 1.1951 -4.7967 0.2402 12 6 0.0752 -4.7605 1.0892 13 7 -0.7280 -5.7125 1.5960 14 6 -1.6464 -5.1428 2.3479 15 6 -2.7023 -5.8561 3.0709 16 6 -2.8883 -7.2115 3.0704 17 6 -3.9585 -7.6129 3.8358 18 6 -4.6253 -6.6241 4.4421 19 16 -3.9289 -5.1081 4.0845 20 8 -1.4709 -3.8063 2.3551 21 6 -0.4004 -3.5239 1.5768 22 6 0.2329 -2.3551 1.2216 23 1 -0.4850 0.8400 0.0004 24 1 2.6811 -3.6787 -0.7646 25 1 1.5613 -5.7436 -0.1285 26 1 -2.2581 -7.8975 2.5241 27 1 -4.2394 -8.6504 3.9404 28 1 -5.4873 -6.7668 5.0769 29 1 -0.1278 -1.4073 1.5929 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033420392.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:03 Heat of formation + Delta-G solvation = 58.128459 kcal Electronic energy + Delta-G solvation = -16922.772133 eV Core-core repulsion = 14096.528642 eV Total energy + Delta-G solvation = -2826.243490 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.81705 -37.60402 -36.88701 -34.17946 -33.14933 -30.58111 -29.30887 -28.45988 -25.54519 -24.22090 -22.09938 -21.34931 -20.62629 -18.88626 -18.26180 -17.24331 -16.36367 -15.76869 -15.58276 -15.46474 -14.81764 -13.92003 -13.12079 -12.97661 -12.91730 -12.65066 -12.52226 -12.27412 -11.94072 -11.60333 -11.33948 -11.18859 -10.91166 -10.70970 -10.44538 -10.35917 -10.21684 -9.52217 -9.27331 -8.71153 -8.40756 -7.62776 -7.21318 -7.06362 -4.63615 0.70649 1.65021 2.06268 2.16284 2.66086 2.80118 2.90669 2.93693 2.98976 3.52663 3.67106 3.74208 4.36795 4.84955 5.13804 5.29444 5.44002 5.70307 5.78755 6.06133 6.14867 6.39824 6.42986 6.52094 6.58740 6.64841 6.77006 7.10614 7.18411 7.38721 7.54077 7.68905 7.83057 8.14461 8.41712 8.46170 8.78041 9.79405 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.034135 B = 0.004440 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.079774 B = 6305.387194 C = 7045.607534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.427 4.427 8 H 0.092 0.908 9 C 0.131 3.869 10 C -0.185 4.185 11 C -0.037 4.037 12 C -0.097 4.097 13 N -0.425 5.425 14 C 0.193 3.807 15 C -0.100 4.100 16 C -0.113 4.113 17 C -0.131 4.131 18 C -0.270 4.270 19 S 0.203 5.797 20 O -0.228 6.228 21 C 0.068 3.932 22 C -0.192 4.192 23 H 0.289 0.711 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.151 0.849 27 H 0.139 0.861 28 H 0.163 0.837 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.802 -5.039 5.062 8.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.153 4.153 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.454 4.454 8 H 0.110 0.890 9 C 0.127 3.873 10 C -0.206 4.206 11 C -0.056 4.056 12 C -0.215 4.215 13 N -0.155 5.155 14 C -0.011 4.011 15 C -0.218 4.218 16 C -0.145 4.145 17 C -0.163 4.163 18 C -0.408 4.408 19 S 0.469 5.531 20 O -0.122 6.122 21 C 0.018 3.982 22 C -0.213 4.213 23 H 0.101 0.899 24 H 0.131 0.869 25 H 0.126 0.874 26 H 0.168 0.832 27 H 0.157 0.843 28 H 0.180 0.820 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.342 -4.040 5.389 8.596 hybrid contribution 0.379 -0.069 -0.322 0.502 sum -4.963 -4.109 5.067 8.197 Atomic orbital electron populations 1.69865 1.07899 1.30401 1.30440 1.26120 0.94902 1.02150 0.92136 0.86151 0.80655 0.79581 0.79633 1.19024 1.19693 1.17980 1.19678 0.98365 0.90884 1.36442 0.89038 1.17375 0.89897 0.92361 0.87639 1.20872 1.02922 0.92251 1.04519 1.19604 0.92679 0.97786 0.95540 1.19212 1.03215 0.88270 1.10823 1.70052 1.03356 1.33239 1.08820 1.21511 0.98410 0.78366 1.02862 1.21621 0.99357 0.95640 1.05230 1.20594 0.99243 0.93076 1.01622 1.19878 0.96445 1.00392 0.99555 1.25104 1.07645 0.98049 1.09959 1.83224 1.21219 1.06923 1.41754 1.84473 1.43607 1.24480 1.59691 1.20435 0.86964 0.97557 0.93236 1.19826 1.01745 0.93566 1.06130 0.89945 0.86858 0.87428 0.83178 0.84293 0.81951 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.43 10.99 55.54 0.61 -17.82 15 2 C 0.07 1.58 5.12 -17.34 -0.09 1.49 15 3 Si 0.92 16.84 29.59 -169.99 -5.03 11.81 15 4 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 5 H -0.27 -4.95 7.11 56.52 0.40 -4.54 15 6 H -0.26 -4.65 7.11 56.52 0.40 -4.25 15 7 C -0.43 -10.18 9.01 -37.98 -0.34 -10.53 15 8 H 0.09 2.01 7.90 -52.49 -0.41 1.60 15 9 C 0.13 3.28 5.57 -106.77 -0.59 2.68 15 10 C -0.19 -4.21 9.70 -39.32 -0.38 -4.59 15 11 C -0.04 -0.84 10.03 -39.59 -0.40 -1.23 15 12 C -0.10 -2.43 7.23 -84.71 -0.61 -3.04 15 13 N -0.42 -10.19 11.22 -9.39 -0.11 -10.29 15 14 C 0.19 4.38 8.02 -14.29 -0.11 4.27 15 15 C -0.10 -1.83 6.46 -36.77 -0.24 -2.07 15 16 C -0.11 -1.77 10.19 -40.34 -0.41 -2.19 15 17 C -0.13 -1.65 10.15 -41.39 -0.42 -2.07 15 18 C -0.27 -3.25 10.92 29.17 0.32 -2.93 15 19 S 0.20 2.98 23.08 -107.50 -2.48 0.49 15 20 O -0.23 -5.66 10.82 1.43 0.02 -5.65 15 21 C 0.07 1.76 7.39 -38.70 -0.29 1.48 15 22 C -0.19 -5.02 8.67 -38.85 -0.34 -5.36 15 23 H 0.29 6.29 8.30 -40.82 -0.34 5.95 15 24 H 0.11 2.25 8.06 -52.49 -0.42 1.82 15 25 H 0.11 2.13 8.06 -52.48 -0.42 1.70 15 26 H 0.15 2.29 8.06 -52.49 -0.42 1.87 15 27 H 0.14 1.34 8.06 -52.49 -0.42 0.92 15 28 H 0.16 1.46 8.06 -52.49 -0.42 1.03 15 29 H 0.13 3.41 6.20 -52.49 -0.33 3.08 15 LS Contribution 278.18 15.07 4.19 4.19 Total: -1.00 -27.88 278.18 -8.69 -36.57 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -1.99 Total: 4.79 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -3.90 Total: -24.09 kcal Atomic # 7 Polarization: -28.61 SS G_CDS: 0.50 Total: -28.11 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: 0.02 Total: -5.65 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.48 Total: 0.49 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.88 -8.69 -36.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033420392.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.701 kcal (2) G-P(sol) polarization free energy of solvation -27.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds