Wall clock time and date at job start Mon Mar 30 2020 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30915 * 1 3 3 Si 1.86799 * 119.99639 * 2 1 4 4 H 1.48505 * 109.47022 * 269.99984 * 3 2 1 5 5 H 1.48497 * 109.47294 * 29.99661 * 3 2 1 6 6 H 1.48502 * 109.47286 * 149.99957 * 3 2 1 7 7 C 1.39837 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99953 * 162.37007 * 7 2 1 9 9 C 1.40893 * 120.00234 * 342.37816 * 7 2 1 10 10 C 1.41258 * 120.01418 * 154.50965 * 9 7 2 11 11 C 1.35753 * 120.32657 * 179.97438 * 10 9 7 12 12 C 1.40582 * 120.15170 * 0.05239 * 11 10 9 13 13 N 1.34471 * 133.25113 * 179.97438 * 12 11 10 14 14 C 1.31657 * 108.99910 * 180.02562 * 13 12 11 15 15 C 1.46511 * 125.02155 * 180.02562 * 14 13 12 16 16 C 1.36810 * 125.46223 * 359.97294 * 15 14 13 17 17 C 1.37564 * 113.24569 * 180.02562 * 16 15 14 18 18 C 1.33789 * 115.09947 * 359.97438 * 17 16 15 19 19 S 1.70612 * 110.99668 * 359.72557 * 18 17 16 20 20 O 1.34791 * 109.95366 * 359.97438 * 14 13 12 21 21 C 1.35331 * 107.87019 * 0.02562 * 20 14 13 22 22 C 1.37592 * 133.61459 * 180.02562 * 21 20 14 23 23 H 0.96993 * 120.00294 * 359.97438 * 1 2 3 24 24 H 1.07994 * 119.83832 * 0.05822 * 10 9 7 25 25 H 1.08005 * 119.92471 * 180.34026 * 11 10 9 26 26 H 1.07996 * 123.38150 * 0.03547 * 16 15 14 27 27 H 1.07994 * 122.44884 * 180.02562 * 17 16 15 28 28 H 1.08002 * 124.50188 * 179.97438 * 18 17 16 29 29 H 1.07999 * 120.20243 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0465 -1.4001 5 1 1.4404 2.6527 0.6999 6 1 3.5406 1.4403 0.7000 7 6 2.0084 -1.2110 0.0005 8 1 3.0503 -1.2331 -0.2827 9 6 1.3536 -2.4024 0.3705 10 6 1.8209 -3.6449 -0.1126 11 6 1.1951 -4.7967 0.2402 12 6 0.0752 -4.7605 1.0892 13 7 -0.7280 -5.7125 1.5960 14 6 -1.6464 -5.1428 2.3479 15 6 -2.7023 -5.8561 3.0709 16 6 -2.8883 -7.2115 3.0704 17 6 -3.9585 -7.6129 3.8358 18 6 -4.6253 -6.6241 4.4421 19 16 -3.9289 -5.1081 4.0845 20 8 -1.4709 -3.8063 2.3551 21 6 -0.4004 -3.5239 1.5768 22 6 0.2329 -2.3551 1.2216 23 1 -0.4850 0.8400 0.0004 24 1 2.6811 -3.6787 -0.7646 25 1 1.5613 -5.7436 -0.1285 26 1 -2.2581 -7.8975 2.5241 27 1 -4.2394 -8.6504 3.9404 28 1 -5.4873 -6.7668 5.0769 29 1 -0.1278 -1.4073 1.5929 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033420392.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:03 Heat of formation + Delta-G solvation = 41.135901 kcal Electronic energy + Delta-G solvation = -16923.508985 eV Core-core repulsion = 14096.528642 eV Total energy + Delta-G solvation = -2826.980343 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.65019 -38.91597 -38.55953 -35.97630 -34.91046 -32.10338 -31.14325 -30.05326 -27.12474 -25.68989 -23.73206 -23.10001 -22.41732 -20.16207 -19.88250 -18.83317 -18.14854 -17.45508 -17.40211 -16.73686 -16.38768 -15.49727 -14.76725 -14.53369 -14.39621 -14.18937 -13.81961 -13.62000 -13.42831 -13.17638 -12.92793 -12.88743 -12.56207 -12.22854 -12.04942 -11.91361 -11.81304 -11.24290 -11.06043 -10.16335 -9.56709 -9.46380 -8.95860 -8.78539 -6.47825 -0.62129 0.43028 0.45427 0.82124 1.04979 1.35272 1.40612 1.55252 1.63306 1.80857 2.05818 2.14463 2.60134 3.19440 3.44103 3.97717 4.18539 4.30944 4.42135 4.59955 4.65836 4.75152 4.79808 5.02235 5.08319 5.22427 5.27003 5.43520 5.45572 5.57904 5.68144 5.89391 5.94853 6.32208 6.59586 6.65819 6.94874 8.10279 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.034135 B = 0.004440 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.079774 B = 6305.387194 C = 7045.607534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.028 3.972 3 Si 0.994 3.006 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.449 4.449 8 H 0.108 0.892 9 C 0.106 3.894 10 C -0.188 4.188 11 C -0.040 4.040 12 C -0.119 4.119 13 N -0.451 5.451 14 C 0.211 3.789 15 C -0.172 4.172 16 C -0.084 4.084 17 C -0.141 4.141 18 C -0.228 4.228 19 S 0.205 5.795 20 O -0.243 6.243 21 C 0.035 3.965 22 C -0.215 4.215 23 H 0.296 0.704 24 H 0.143 0.857 25 H 0.137 0.863 26 H 0.150 0.850 27 H 0.180 0.820 28 H 0.207 0.793 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.729 -6.222 5.972 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.190 4.190 3 Si 0.813 3.187 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.173 1.173 7 C -0.476 4.476 8 H 0.125 0.875 9 C 0.102 3.898 10 C -0.208 4.208 11 C -0.059 4.059 12 C -0.235 4.235 13 N -0.181 5.181 14 C 0.005 3.995 15 C -0.290 4.290 16 C -0.118 4.118 17 C -0.171 4.171 18 C -0.366 4.366 19 S 0.472 5.528 20 O -0.138 6.138 21 C -0.014 4.014 22 C -0.236 4.236 23 H 0.107 0.893 24 H 0.160 0.840 25 H 0.155 0.845 26 H 0.168 0.832 27 H 0.197 0.803 28 H 0.224 0.776 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.240 -5.227 6.273 10.276 hybrid contribution 0.363 0.078 -0.420 0.560 sum -5.877 -5.149 5.853 9.762 Atomic orbital electron populations 1.69937 1.09719 1.31757 1.31109 1.27108 0.95484 1.05617 0.90827 0.85009 0.79110 0.74552 0.80031 1.17892 1.19467 1.17321 1.20053 0.99165 0.91308 1.37060 0.87456 1.17759 0.89974 0.94061 0.87965 1.21152 1.03639 0.91398 1.04575 1.19935 0.91951 0.99115 0.94924 1.19603 1.04217 0.88073 1.11611 1.70059 1.04466 1.32889 1.10673 1.22508 0.98224 0.77600 1.01171 1.21825 1.01187 0.96956 1.09080 1.20956 0.99068 0.91908 0.99875 1.20191 0.95348 1.02565 0.99000 1.25693 1.07148 0.96012 1.07700 1.83270 1.20133 1.08741 1.40700 1.84442 1.43565 1.26024 1.59753 1.20675 0.87902 0.98285 0.94555 1.19794 1.03211 0.92883 1.07719 0.89274 0.83951 0.84524 0.83226 0.80296 0.77616 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.31 10.99 21.81 0.24 -40.07 15 2 C 0.03 1.32 5.12 85.22 0.44 1.76 15 3 Si 0.99 34.49 29.59 68.60 2.03 36.52 15 4 H -0.25 -8.36 7.11 99.48 0.71 -7.66 15 5 H -0.27 -9.17 7.11 99.48 0.71 -8.47 15 6 H -0.25 -8.35 7.11 99.48 0.71 -7.64 15 7 C -0.45 -21.94 9.01 23.31 0.21 -21.73 15 8 H 0.11 4.72 7.90 -2.91 -0.02 4.69 15 9 C 0.11 5.53 5.57 -21.26 -0.12 5.41 15 10 C -0.19 -8.69 9.70 22.44 0.22 -8.47 15 11 C -0.04 -1.86 10.03 22.27 0.22 -1.64 15 12 C -0.12 -6.21 7.23 40.03 0.29 -5.93 15 13 N -0.45 -22.35 11.22 -297.27 -3.33 -25.69 15 14 C 0.21 9.91 8.02 86.88 0.70 10.61 15 15 C -0.17 -6.27 6.46 24.09 0.16 -6.11 15 16 C -0.08 -2.45 10.19 21.78 0.22 -2.23 15 17 C -0.14 -2.91 10.15 21.10 0.21 -2.70 15 18 C -0.23 -4.39 10.92 66.81 0.73 -3.66 15 19 S 0.21 5.67 23.08 -56.49 -1.30 4.37 15 20 O -0.24 -12.75 10.82 -17.79 -0.19 -12.94 15 21 C 0.03 1.94 7.39 22.84 0.17 2.10 15 22 C -0.22 -12.02 8.67 22.75 0.20 -11.82 15 23 H 0.30 13.36 8.30 -92.71 -0.77 12.59 15 24 H 0.14 5.57 8.06 -2.91 -0.02 5.55 15 25 H 0.14 5.36 8.06 -2.91 -0.02 5.33 15 26 H 0.15 4.33 8.06 -2.91 -0.02 4.31 15 27 H 0.18 2.36 8.06 -2.91 -0.02 2.34 15 28 H 0.21 2.27 8.06 -2.91 -0.02 2.24 15 29 H 0.11 6.25 6.20 -2.91 -0.02 6.23 15 Total: -1.00 -64.97 278.18 2.27 -62.70 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 1.19 Total: 19.52 kcal Atomic # 6 Polarization: -48.05 SS G_CDS: 3.64 Total: -44.41 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -3.10 Total: -65.75 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.19 Total: -12.94 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -1.30 Total: 4.37 kcal Total: -64.97 2.27 -62.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033420392.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.835 kcal (2) G-P(sol) polarization free energy of solvation -64.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds