Wall clock time and date at job start Mon Mar 30 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99574 * 2 1 4 4 H 1.48499 * 109.47017 * 239.99896 * 3 2 1 5 5 H 1.48495 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47458 * 119.99763 * 3 2 1 7 7 C 1.37882 * 120.00808 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00338 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99374 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.30120 * 60.41762 * 9 7 2 11 11 N 1.46630 * 109.13693 * 300.93221 * 9 7 2 12 12 C 1.47157 * 110.25202 * 187.22107 * 11 9 7 13 13 C 1.52888 * 108.51698 * 71.23353 * 12 11 9 14 14 C 1.50723 * 109.96810 * 309.62283 * 13 12 11 15 15 C 1.38803 * 118.47830 * 196.70434 * 14 13 12 16 16 Cl 1.73609 * 119.82885 * 0.46457 * 15 14 13 17 17 C 1.38120 * 120.34097 * 180.44621 * 15 14 13 18 18 C 1.38365 * 119.80037 * 359.97438 * 17 15 14 19 19 Cl 1.73603 * 120.07348 * 179.64490 * 18 17 15 20 20 C 1.38136 * 119.84936 * 359.91639 * 18 17 15 21 21 C 1.37817 * 121.65893 * 16.98116 * 14 13 12 22 22 H 0.96993 * 120.00357 * 0.02562 * 1 2 3 23 23 H 1.00902 * 110.99925 * 63.79868 * 11 9 7 24 24 H 1.08993 * 109.62836 * 190.94251 * 12 11 9 25 25 H 1.08995 * 109.63090 * 311.33387 * 12 11 9 26 26 H 1.09000 * 109.39029 * 189.47006 * 13 12 11 27 27 H 1.09001 * 109.38964 * 69.77303 * 13 12 11 28 28 H 1.08002 * 120.10198 * 180.02562 * 17 15 14 29 29 H 1.08003 * 119.79493 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6316 -2.5574 -0.8944 11 7 0.3938 -2.5591 1.1885 12 6 -0.2221 -3.8905 1.3054 13 6 0.8610 -4.8933 1.7039 14 6 2.0501 -4.7576 0.7878 15 6 2.9782 -5.7892 0.7508 16 17 2.7436 -7.1976 1.7384 17 6 4.0870 -5.7010 -0.0680 18 6 4.2729 -4.5787 -0.8555 19 17 5.6688 -4.4564 -1.8803 20 6 3.3480 -3.5532 -0.8203 21 6 2.2336 -3.6410 0.0011 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3097 -1.8362 1.1636 24 1 -0.9996 -3.8685 2.0690 25 1 -0.6570 -4.1781 0.3482 26 1 0.4618 -5.9049 1.6313 27 1 1.1717 -4.7013 2.7309 28 1 4.8065 -6.5061 -0.0941 29 1 3.4937 -2.6777 -1.4357 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083691919.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:37 Heat of formation + Delta-G solvation = 3.167600 kcal Electronic energy + Delta-G solvation = -16369.550346 eV Core-core repulsion = 13536.447018 eV Total energy + Delta-G solvation = -2833.103328 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 271.023 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61026 -36.62691 -36.44264 -35.28771 -33.23023 -31.27577 -30.29231 -28.42109 -25.68652 -23.18429 -22.64345 -21.33459 -18.95695 -16.86651 -16.44595 -15.68440 -15.05644 -14.80339 -14.23343 -14.02375 -13.54662 -13.31543 -12.79636 -12.46778 -12.19394 -12.08012 -11.72332 -11.44814 -11.27670 -10.98638 -10.80787 -10.71734 -10.56032 -10.41963 -10.29472 -9.76161 -9.39993 -8.69198 -8.28458 -8.06207 -7.07675 -6.24081 -4.27258 1.46143 1.60009 2.13426 2.62586 3.25777 3.30381 3.34090 3.93204 4.32379 5.00438 5.06509 5.23257 5.44958 5.54356 5.63953 5.81191 5.94417 6.05413 6.17172 6.21757 6.38449 6.50941 6.59113 6.65520 6.98741 7.07306 7.14297 7.73522 7.94571 8.41668 8.79770 8.89803 9.41409 10.86890 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.007700 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.961254 B = 3635.572088 C = 5059.909421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.246 3.754 10 H 0.019 0.981 11 N -0.675 5.675 12 C 0.047 3.953 13 C -0.072 4.072 14 C -0.066 4.066 15 C -0.031 4.031 16 Cl -0.077 7.077 17 C -0.124 4.124 18 C -0.034 4.034 19 Cl -0.078 7.078 20 C -0.091 4.091 21 C -0.011 4.011 22 H 0.267 0.733 23 H 0.369 0.631 24 H 0.063 0.937 25 H 0.020 0.980 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 -9.911 0.172 10.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.138 3.862 10 H 0.036 0.964 11 N -0.313 5.313 12 C -0.084 4.084 13 C -0.109 4.109 14 C -0.067 4.067 15 C -0.058 4.058 16 Cl -0.048 7.048 17 C -0.144 4.144 18 C -0.060 4.060 19 Cl -0.050 7.050 20 C -0.110 4.110 21 C -0.013 4.013 22 H 0.077 0.923 23 H 0.193 0.807 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.151 0.849 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.238 -10.019 0.606 10.896 hybrid contribution -0.008 0.732 -0.655 0.982 sum 4.229 -9.287 -0.048 10.205 Atomic orbital electron populations 1.69609 1.06092 1.27546 1.50474 1.24957 0.94928 0.99426 0.93749 0.86484 0.79502 0.82222 0.78836 1.20112 1.21221 1.19981 1.21063 0.93027 0.89028 1.51251 0.91630 1.18048 0.89254 0.89860 0.89001 0.96352 1.61098 1.25431 1.02298 1.42433 1.21915 0.94997 0.92781 0.98701 1.20558 0.93089 0.98975 0.98304 1.19644 0.96395 0.92283 0.98368 1.20647 0.97432 0.89894 0.97834 1.98321 1.96755 1.40276 1.69488 1.20549 0.97920 0.98230 0.97661 1.20612 0.91168 0.96765 0.97487 1.98335 1.41331 1.98171 1.67127 1.21295 0.92506 0.97641 0.99531 1.20262 0.95340 0.94059 0.91603 0.92282 0.80660 0.91862 0.96221 0.91209 0.90051 0.84921 0.83628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.63 11.45 55.43 0.63 -22.99 15 2 C 0.07 1.85 5.37 -17.82 -0.10 1.76 15 3 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 15 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.51 -12.94 7.99 -34.44 -0.28 -13.21 15 8 H 0.07 1.67 6.71 -52.49 -0.35 1.31 15 9 C 0.25 5.84 2.47 -70.20 -0.17 5.67 15 10 H 0.02 0.49 8.14 -51.92 -0.42 0.07 15 11 N -0.68 -15.39 6.42 -109.29 -0.70 -16.09 15 12 C 0.05 0.87 6.58 -3.74 -0.02 0.85 15 13 C -0.07 -1.24 5.26 -27.93 -0.15 -1.38 15 14 C -0.07 -1.23 5.78 -104.56 -0.60 -1.84 15 15 C -0.03 -0.52 6.31 -39.42 -0.25 -0.77 15 16 Cl -0.08 -1.10 27.39 -51.86 -1.42 -2.52 15 17 C -0.12 -1.99 9.61 -39.58 -0.38 -2.37 15 18 C -0.03 -0.57 6.31 -39.57 -0.25 -0.82 15 19 Cl -0.08 -1.17 28.96 -51.86 -1.50 -2.67 15 20 C -0.09 -1.76 8.51 -39.44 -0.34 -2.09 15 21 C -0.01 -0.24 5.47 -104.63 -0.57 -0.81 15 22 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 23 H 0.37 8.96 6.78 -39.29 -0.27 8.70 15 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 15 26 H 0.07 1.05 7.35 -51.93 -0.38 0.67 15 27 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 28 H 0.13 1.82 8.06 -52.49 -0.42 1.40 15 29 H 0.15 2.87 7.08 -52.48 -0.37 2.50 15 LS Contribution 271.52 15.07 4.09 4.09 Total: -1.00 -25.23 271.52 -9.64 -34.87 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -2.62 Total: 5.04 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -3.11 Total: -15.03 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.07 Total: -39.08 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -2.92 Total: -5.19 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -25.23 -9.64 -34.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083691919.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.038 kcal (2) G-P(sol) polarization free energy of solvation -25.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds