Wall clock time and date at job start Mon Mar 30 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99574 * 2 1 4 4 H 1.48499 * 109.47017 * 239.99896 * 3 2 1 5 5 H 1.48495 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47458 * 119.99763 * 3 2 1 7 7 C 1.37882 * 120.00808 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00338 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99374 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.30120 * 60.41762 * 9 7 2 11 11 N 1.46630 * 109.13693 * 300.93221 * 9 7 2 12 12 C 1.47157 * 110.25202 * 187.22107 * 11 9 7 13 13 C 1.52888 * 108.51698 * 71.23353 * 12 11 9 14 14 C 1.50723 * 109.96810 * 309.62283 * 13 12 11 15 15 C 1.38803 * 118.47830 * 196.70434 * 14 13 12 16 16 Cl 1.73609 * 119.82885 * 0.46457 * 15 14 13 17 17 C 1.38120 * 120.34097 * 180.44621 * 15 14 13 18 18 C 1.38365 * 119.80037 * 359.97438 * 17 15 14 19 19 Cl 1.73603 * 120.07348 * 179.64490 * 18 17 15 20 20 C 1.38136 * 119.84936 * 359.91639 * 18 17 15 21 21 C 1.37817 * 121.65893 * 16.98116 * 14 13 12 22 22 H 0.96993 * 120.00357 * 0.02562 * 1 2 3 23 23 H 1.00902 * 110.99925 * 63.79868 * 11 9 7 24 24 H 1.08993 * 109.62836 * 190.94251 * 12 11 9 25 25 H 1.08995 * 109.63090 * 311.33387 * 12 11 9 26 26 H 1.09000 * 109.39029 * 189.47006 * 13 12 11 27 27 H 1.09001 * 109.38964 * 69.77303 * 13 12 11 28 28 H 1.08002 * 120.10198 * 180.02562 * 17 15 14 29 29 H 1.08003 * 119.79493 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6316 -2.5574 -0.8944 11 7 0.3938 -2.5591 1.1885 12 6 -0.2221 -3.8905 1.3054 13 6 0.8610 -4.8933 1.7039 14 6 2.0501 -4.7576 0.7878 15 6 2.9782 -5.7892 0.7508 16 17 2.7436 -7.1976 1.7384 17 6 4.0870 -5.7010 -0.0680 18 6 4.2729 -4.5787 -0.8555 19 17 5.6688 -4.4564 -1.8803 20 6 3.3480 -3.5532 -0.8203 21 6 2.2336 -3.6410 0.0011 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3097 -1.8362 1.1636 24 1 -0.9996 -3.8685 2.0690 25 1 -0.6570 -4.1781 0.3482 26 1 0.4618 -5.9049 1.6313 27 1 1.1717 -4.7013 2.7309 28 1 4.8065 -6.5061 -0.0941 29 1 3.4937 -2.6777 -1.4357 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083691919.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:37 Heat of formation + Delta-G solvation = -10.173567 kcal Electronic energy + Delta-G solvation = -16370.128862 eV Core-core repulsion = 13536.447018 eV Total energy + Delta-G solvation = -2833.681844 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 271.023 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.06572 -38.04607 -37.71036 -36.71319 -34.97498 -32.94014 -31.78517 -29.94549 -27.48323 -24.78214 -24.11762 -22.90471 -20.45909 -18.62108 -18.02641 -17.19731 -16.59485 -16.43970 -15.80457 -15.49501 -15.04529 -14.86771 -14.40967 -14.02255 -13.77315 -13.39178 -13.18605 -12.88646 -12.83726 -12.74793 -12.40507 -12.13649 -12.07927 -11.84102 -11.72005 -11.35399 -11.17935 -10.64495 -9.72046 -9.45119 -8.86215 -8.19246 -6.28625 0.05533 0.18961 0.83249 1.31617 1.45037 1.46648 1.53572 2.39829 2.53223 3.08886 3.70993 3.78013 3.96114 4.04277 4.18185 4.39110 4.52812 4.60444 4.71630 4.76822 4.92394 5.03789 5.08614 5.20646 5.28460 5.50916 5.61719 5.74519 6.12844 6.56103 6.90218 7.03830 7.42641 8.90337 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.007700 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.961254 B = 3635.572088 C = 5059.909421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.029 3.971 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.250 3.750 10 H -0.019 1.019 11 N -0.686 5.686 12 C 0.045 3.955 13 C -0.066 4.066 14 C -0.075 4.075 15 C -0.031 4.031 16 Cl -0.048 7.048 17 C -0.111 4.111 18 C -0.032 4.032 19 Cl -0.057 7.057 20 C -0.103 4.103 21 C -0.041 4.041 22 H 0.267 0.733 23 H 0.355 0.645 24 H 0.085 0.915 25 H 0.014 0.986 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.163 0.837 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.001 -11.499 0.818 12.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.171 4.171 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.078 0.922 9 C 0.142 3.858 10 H -0.002 1.002 11 N -0.321 5.321 12 C -0.085 4.085 13 C -0.103 4.103 14 C -0.076 4.076 15 C -0.057 4.057 16 Cl -0.019 7.019 17 C -0.130 4.130 18 C -0.059 4.059 19 Cl -0.029 7.029 20 C -0.122 4.122 21 C -0.042 4.042 22 H 0.077 0.923 23 H 0.178 0.822 24 H 0.103 0.897 25 H 0.032 0.968 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.180 0.820 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.452 -11.629 1.251 12.904 hybrid contribution -0.350 1.114 -0.864 1.452 sum 5.102 -10.515 0.388 11.694 Atomic orbital electron populations 1.69715 1.07049 1.28019 1.51104 1.25640 0.95679 1.02166 0.93638 0.85605 0.78383 0.78898 0.78710 1.19597 1.20862 1.20067 1.21329 0.93015 0.90409 1.51097 0.92177 1.17800 0.89469 0.90681 0.87852 1.00234 1.61047 1.25467 1.03889 1.41739 1.22045 0.96114 0.91162 0.99177 1.20569 0.92102 0.99670 0.97990 1.19777 0.97453 0.92198 0.98215 1.20668 0.96888 0.90281 0.97911 1.98333 1.96649 1.38321 1.68595 1.20880 0.97841 0.98198 0.96072 1.20612 0.91266 0.96347 0.97705 1.98342 1.39876 1.98142 1.66492 1.21187 0.93155 0.98205 0.99660 1.20045 0.95782 0.94382 0.93984 0.92343 0.82217 0.89652 0.96810 0.88617 0.89679 0.81974 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.74 11.45 21.45 0.25 -49.50 15 2 C 0.03 1.52 5.37 84.66 0.45 1.97 15 3 Si 0.96 42.27 29.54 68.60 2.03 44.30 15 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.28 -12.09 7.11 99.48 0.71 -11.39 15 7 C -0.52 -27.52 7.99 25.60 0.20 -27.31 15 8 H 0.06 3.15 6.71 -2.92 -0.02 3.13 15 9 C 0.25 12.34 2.47 43.45 0.11 12.45 15 10 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 15 11 N -0.69 -32.01 6.42 -499.68 -3.21 -35.22 15 12 C 0.04 1.67 6.58 86.22 0.57 2.24 15 13 C -0.07 -2.17 5.26 29.82 0.16 -2.01 15 14 C -0.08 -2.74 5.78 -19.82 -0.11 -2.86 15 15 C -0.03 -0.94 6.31 22.38 0.14 -0.80 15 16 Cl -0.05 -1.20 27.39 -2.72 -0.07 -1.28 15 17 C -0.11 -3.23 9.61 22.27 0.21 -3.02 15 18 C -0.03 -1.05 6.31 22.28 0.14 -0.91 15 19 Cl -0.06 -1.61 28.96 -2.72 -0.08 -1.69 15 20 C -0.10 -4.02 8.51 22.36 0.19 -3.83 15 21 C -0.04 -1.73 5.47 -19.87 -0.11 -1.84 15 22 H 0.27 13.82 8.31 -92.71 -0.77 13.05 15 23 H 0.36 17.88 6.78 -89.69 -0.61 17.27 15 24 H 0.09 2.75 8.14 -2.39 -0.02 2.73 15 25 H 0.01 0.52 8.05 -2.39 -0.02 0.50 15 26 H 0.10 2.62 7.35 -2.39 -0.02 2.60 15 27 H 0.08 2.75 8.14 -2.39 -0.02 2.73 15 28 H 0.16 3.77 8.06 -2.91 -0.02 3.74 15 29 H 0.13 5.37 7.08 -2.91 -0.02 5.35 15 Total: -1.00 -54.56 271.52 1.45 -53.11 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.58 Total: 16.19 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 1.95 Total: -25.92 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -2.96 Total: -84.72 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.15 Total: -2.96 kcal Total: -54.56 1.45 -53.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083691919.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.936 kcal (2) G-P(sol) polarization free energy of solvation -54.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds