Wall clock time and date at job start Mon Mar 30 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99656 * 2 1 4 4 H 1.48500 * 109.46904 * 239.99922 * 3 2 1 5 5 H 1.48495 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47309 * 119.99576 * 3 2 1 7 7 C 1.37877 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99984 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.26664 * 299.51069 * 9 7 2 11 11 N 1.46624 * 109.27232 * 58.98235 * 9 7 2 12 12 C 1.47156 * 110.25673 * 172.82281 * 11 9 7 13 13 C 1.52894 * 108.50942 * 288.75580 * 12 11 9 14 14 C 1.50724 * 110.02426 * 50.20302 * 13 12 11 15 15 C 1.38671 * 118.47144 * 162.95149 * 14 13 12 16 16 C 1.38126 * 120.35791 * 179.78123 * 15 14 13 17 17 Cl 1.73601 * 120.10661 * 180.26519 * 16 15 14 18 18 C 1.38496 * 119.78556 * 0.28680 * 16 15 14 19 19 Cl 1.73599 * 120.08200 * 180.11577 * 18 16 15 20 20 C 1.38102 * 119.82756 * 0.09440 * 18 16 15 21 21 C 1.37854 * 121.64939 * 343.44255 * 14 13 12 22 22 H 0.96998 * 120.00275 * 0.02562 * 1 2 3 23 23 H 1.00904 * 111.00260 * 49.39878 * 11 9 7 24 24 H 1.09001 * 109.62980 * 48.45814 * 12 11 9 25 25 H 1.08998 * 109.63484 * 169.04667 * 12 11 9 26 26 H 1.08995 * 109.39278 * 170.56139 * 13 12 11 27 27 H 1.09002 * 109.38620 * 290.35924 * 13 12 11 28 28 H 1.08002 * 119.82488 * 0.06335 * 15 14 13 29 29 H 1.07992 * 119.80754 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7464 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6321 -2.5571 0.8958 11 7 0.3920 -2.5620 -1.1859 12 6 -0.2233 -3.8939 -1.2995 13 6 0.8600 -4.8966 -1.6980 14 6 2.0529 -4.7567 -0.7875 15 6 2.9773 -5.7895 -0.7456 16 6 4.0873 -5.7002 0.0717 17 17 5.2440 -6.9941 0.1139 18 6 4.2742 -4.5753 0.8577 19 17 5.6680 -4.4537 1.8854 20 6 3.3492 -3.5505 0.8214 21 6 2.2341 -3.6406 0.0010 22 1 -0.4850 0.8400 -0.0004 23 1 0.9102 -2.3307 -2.0203 24 1 -0.6534 -4.1816 -0.3401 25 1 -1.0020 -3.8738 -2.0619 26 1 0.4616 -5.9084 -1.6236 27 1 1.1705 -4.7046 -2.7251 28 1 2.8310 -6.6665 -1.3587 29 1 3.4950 -2.6737 1.4347 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083692395.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:58 Heat of formation + Delta-G solvation = 5.092534 kcal Electronic energy + Delta-G solvation = -16313.264695 eV Core-core repulsion = 13480.244839 eV Total energy + Delta-G solvation = -2833.019857 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 271.023 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.72542 -36.93707 -36.23715 -35.25889 -33.27473 -31.43978 -29.88689 -28.54347 -25.51610 -23.07834 -22.73519 -21.40384 -19.46899 -16.79214 -16.58909 -15.49822 -15.31654 -14.68491 -14.07891 -13.74408 -13.62305 -13.33956 -13.10502 -12.42280 -12.16970 -11.94587 -11.65180 -11.51285 -11.30379 -10.95799 -10.83468 -10.74619 -10.60692 -10.40639 -10.32952 -9.95596 -9.25264 -8.58564 -8.39425 -7.95408 -7.12494 -6.02061 -4.19020 1.39692 1.54339 2.13407 2.52160 3.29087 3.34402 3.37174 3.88059 4.38321 4.95566 5.11288 5.18845 5.38784 5.51727 5.62321 5.64752 5.83681 5.91856 6.09086 6.16807 6.31953 6.43205 6.54745 6.61716 6.93163 7.14289 7.23016 7.76094 7.98481 8.37522 8.72909 8.92797 9.50847 11.01413 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.020306 B = 0.006950 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.600090 B = 4027.748764 C = 5210.470555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.086 3.914 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.250 3.750 10 H 0.060 0.940 11 N -0.640 5.640 12 C 0.050 3.950 13 C -0.116 4.116 14 C -0.080 4.080 15 C -0.106 4.106 16 C -0.048 4.048 17 Cl -0.073 7.073 18 C -0.037 4.037 19 Cl -0.070 7.070 20 C -0.081 4.081 21 C -0.054 4.054 22 H 0.260 0.740 23 H 0.329 0.671 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.130 0.870 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -10.366 -0.968 11.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.122 4.122 3 Si 0.713 3.287 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.142 3.858 10 H 0.078 0.922 11 N -0.266 5.266 12 C -0.081 4.081 13 C -0.155 4.155 14 C -0.081 4.081 15 C -0.125 4.125 16 C -0.075 4.075 17 Cl -0.045 7.045 18 C -0.065 4.065 19 Cl -0.041 7.041 20 C -0.100 4.100 21 C -0.057 4.057 22 H 0.069 0.931 23 H 0.147 0.853 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.128 -10.040 -0.559 10.870 hybrid contribution 1.632 0.104 -0.252 1.654 sum 5.760 -9.937 -0.811 11.514 Atomic orbital electron populations 1.70088 1.05667 1.26273 1.45580 1.24953 0.94680 0.98732 0.93871 0.86780 0.79763 0.83389 0.78755 1.20221 1.21259 1.20154 1.20928 0.92410 0.89236 1.55679 0.92148 1.18293 0.87206 0.88833 0.91501 0.92249 1.61304 1.37196 1.22106 1.06039 1.22125 0.95509 0.89578 1.00885 1.21292 0.94801 1.01525 0.97869 1.19742 0.96495 0.93364 0.98451 1.20839 0.92880 0.99778 0.99013 1.20493 0.94302 0.90417 1.02320 1.98335 1.59172 1.49046 1.97915 1.20792 0.92147 0.95991 0.97547 1.98342 1.41051 1.98109 1.66566 1.21270 0.92122 0.97033 0.99556 1.21511 0.96156 0.96258 0.91781 0.93051 0.85341 0.91716 0.91593 0.91243 0.90938 0.85204 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.80 12.72 55.43 0.70 -22.10 15 2 C 0.09 2.21 5.38 -17.82 -0.10 2.12 15 3 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 15 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 15 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.54 -13.62 7.84 -34.44 -0.27 -13.89 15 8 H 0.06 1.51 6.70 -52.49 -0.35 1.15 15 9 C 0.25 5.69 2.40 -70.20 -0.17 5.52 15 10 H 0.06 1.52 8.14 -51.93 -0.42 1.09 15 11 N -0.64 -13.78 5.88 -109.29 -0.64 -14.42 15 12 C 0.05 0.86 6.62 -3.74 -0.02 0.83 15 13 C -0.12 -1.74 5.82 -27.93 -0.16 -1.90 15 14 C -0.08 -1.38 5.77 -104.59 -0.60 -1.98 15 15 C -0.11 -1.67 9.44 -39.46 -0.37 -2.04 15 16 C -0.05 -0.78 6.32 -39.53 -0.25 -1.03 15 17 Cl -0.07 -1.05 27.98 -51.86 -1.45 -2.51 15 18 C -0.04 -0.65 6.32 -39.54 -0.25 -0.90 15 19 Cl -0.07 -1.10 27.98 -51.86 -1.45 -2.55 15 20 C -0.08 -1.54 8.51 -39.45 -0.34 -1.88 15 21 C -0.05 -1.08 5.47 -104.62 -0.57 -1.65 15 22 H 0.26 6.79 8.31 -40.82 -0.34 6.45 15 23 H 0.33 7.10 8.55 -39.29 -0.34 6.77 15 24 H 0.06 1.15 8.05 -51.93 -0.42 0.73 15 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 28 H 0.13 1.72 8.06 -52.49 -0.42 1.29 15 29 H 0.15 2.94 7.07 -52.49 -0.37 2.57 15 LS Contribution 274.61 15.07 4.14 4.14 Total: -1.00 -25.71 274.61 -9.55 -35.27 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -2.72 Total: 3.87 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -3.11 Total: -16.80 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.06 Total: -36.52 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -2.90 Total: -5.06 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -25.71 -9.55 -35.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083692395.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.358 kcal (2) G-P(sol) polarization free energy of solvation -25.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds