Wall clock time and date at job start Mon Mar 30 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99656 * 2 1 4 4 H 1.48500 * 109.46904 * 239.99922 * 3 2 1 5 5 H 1.48495 * 109.46844 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47309 * 119.99576 * 3 2 1 7 7 C 1.37877 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99984 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.26664 * 299.51069 * 9 7 2 11 11 N 1.46624 * 109.27232 * 58.98235 * 9 7 2 12 12 C 1.47156 * 110.25673 * 172.82281 * 11 9 7 13 13 C 1.52894 * 108.50942 * 288.75580 * 12 11 9 14 14 C 1.50724 * 110.02426 * 50.20302 * 13 12 11 15 15 C 1.38671 * 118.47144 * 162.95149 * 14 13 12 16 16 C 1.38126 * 120.35791 * 179.78123 * 15 14 13 17 17 Cl 1.73601 * 120.10661 * 180.26519 * 16 15 14 18 18 C 1.38496 * 119.78556 * 0.28680 * 16 15 14 19 19 Cl 1.73599 * 120.08200 * 180.11577 * 18 16 15 20 20 C 1.38102 * 119.82756 * 0.09440 * 18 16 15 21 21 C 1.37854 * 121.64939 * 343.44255 * 14 13 12 22 22 H 0.96998 * 120.00275 * 0.02562 * 1 2 3 23 23 H 1.00904 * 111.00260 * 49.39878 * 11 9 7 24 24 H 1.09001 * 109.62980 * 48.45814 * 12 11 9 25 25 H 1.08998 * 109.63484 * 169.04667 * 12 11 9 26 26 H 1.08995 * 109.39278 * 170.56139 * 13 12 11 27 27 H 1.09002 * 109.38620 * 290.35924 * 13 12 11 28 28 H 1.08002 * 119.82488 * 0.06335 * 15 14 13 29 29 H 1.07992 * 119.80754 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7464 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6321 -2.5571 0.8958 11 7 0.3920 -2.5620 -1.1859 12 6 -0.2233 -3.8939 -1.2995 13 6 0.8600 -4.8966 -1.6980 14 6 2.0529 -4.7567 -0.7875 15 6 2.9773 -5.7895 -0.7456 16 6 4.0873 -5.7002 0.0717 17 17 5.2440 -6.9941 0.1139 18 6 4.2742 -4.5753 0.8577 19 17 5.6680 -4.4537 1.8854 20 6 3.3492 -3.5505 0.8214 21 6 2.2341 -3.6406 0.0010 22 1 -0.4850 0.8400 -0.0004 23 1 0.9102 -2.3307 -2.0203 24 1 -0.6534 -4.1816 -0.3401 25 1 -1.0020 -3.8738 -2.0619 26 1 0.4616 -5.9084 -1.6236 27 1 1.1705 -4.7046 -2.7251 28 1 2.8310 -6.6665 -1.3587 29 1 3.4950 -2.6737 1.4347 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083692395.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:58 Heat of formation + Delta-G solvation = -8.742159 kcal Electronic energy + Delta-G solvation = -16313.864613 eV Core-core repulsion = 13480.244839 eV Total energy + Delta-G solvation = -2833.619774 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 271.023 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.13076 -38.29655 -37.50395 -36.67568 -34.96473 -33.09648 -31.31203 -30.00987 -27.28284 -24.61201 -24.13704 -22.93466 -20.91624 -18.60145 -17.99107 -16.92611 -16.73211 -16.50403 -15.45002 -15.25906 -15.03034 -14.84866 -14.47163 -13.88800 -13.83637 -13.40183 -12.95675 -12.88788 -12.76930 -12.76617 -12.50130 -12.07889 -11.99744 -11.85506 -11.73967 -11.65922 -11.02156 -10.54784 -9.75457 -9.37170 -8.71365 -7.98954 -6.20158 0.02495 0.18337 0.84654 1.20665 1.46479 1.47918 1.54059 2.42995 2.54174 3.23503 3.67533 3.86213 3.92763 4.09267 4.26572 4.29824 4.45944 4.56962 4.83145 4.84468 5.00322 5.07437 5.15047 5.21852 5.37370 5.55650 5.70756 5.77843 6.16632 6.60537 7.05347 7.08035 7.52096 9.03748 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.020306 B = 0.006950 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.600090 B = 4027.748764 C = 5210.470555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.550 4.550 8 H 0.055 0.945 9 C 0.258 3.742 10 H 0.018 0.982 11 N -0.661 5.661 12 C 0.050 3.950 13 C -0.107 4.107 14 C -0.079 4.079 15 C -0.095 4.095 16 C -0.047 4.047 17 Cl -0.051 7.051 18 C -0.044 4.044 19 Cl -0.058 7.058 20 C -0.093 4.093 21 C -0.080 4.080 22 H 0.257 0.743 23 H 0.326 0.674 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.165 0.835 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.565 -12.246 -2.102 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.073 0.927 9 C 0.149 3.851 10 H 0.036 0.964 11 N -0.288 5.288 12 C -0.080 4.080 13 C -0.145 4.145 14 C -0.079 4.079 15 C -0.114 4.114 16 C -0.074 4.074 17 Cl -0.022 7.022 18 C -0.071 4.071 19 Cl -0.029 7.029 20 C -0.113 4.113 21 C -0.083 4.083 22 H 0.066 0.934 23 H 0.144 0.856 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.122 0.878 27 H 0.107 0.893 28 H 0.183 0.817 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.039 -11.932 -1.690 13.063 hybrid contribution 1.410 0.575 0.134 1.529 sum 6.449 -11.357 -1.556 13.153 Atomic orbital electron populations 1.70206 1.06851 1.26602 1.47281 1.25581 0.95309 1.01469 0.93881 0.85894 0.78567 0.80098 0.78638 1.19943 1.21231 1.19980 1.21222 0.92372 0.90668 1.54541 0.92702 1.17854 0.87297 0.89375 0.90572 0.96443 1.61072 1.37093 1.25376 1.05245 1.22159 0.96513 0.88277 1.01051 1.21253 0.92931 1.02437 0.97898 1.19977 0.97563 0.92593 0.97812 1.21136 0.91683 1.00090 0.98496 1.20665 0.94819 0.90453 1.01485 1.98346 1.58343 1.47702 1.97798 1.20785 0.92232 0.96040 0.98076 1.98341 1.40208 1.98118 1.66276 1.21101 0.92972 0.97341 0.99881 1.21223 0.96237 0.96738 0.94074 0.93381 0.85631 0.92876 0.89689 0.87822 0.89314 0.81735 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.74 12.72 21.45 0.27 -48.47 15 2 C 0.04 2.24 5.38 84.66 0.46 2.69 15 3 Si 0.94 42.12 29.54 68.60 2.03 44.15 15 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 5 H -0.29 -12.71 7.11 99.48 0.71 -12.01 15 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 7 C -0.55 -28.42 7.84 25.60 0.20 -28.22 15 8 H 0.05 2.82 6.70 -2.91 -0.02 2.80 15 9 C 0.26 12.16 2.40 43.45 0.10 12.26 15 10 H 0.02 0.97 8.14 -2.39 -0.02 0.95 15 11 N -0.66 -28.83 5.88 -499.68 -2.94 -31.77 15 12 C 0.05 1.67 6.62 86.22 0.57 2.24 15 13 C -0.11 -2.87 5.82 29.82 0.17 -2.70 15 14 C -0.08 -2.55 5.77 -19.84 -0.11 -2.66 15 15 C -0.10 -2.66 9.44 22.35 0.21 -2.45 15 16 C -0.05 -1.40 6.32 22.30 0.14 -1.26 15 17 Cl -0.05 -1.30 27.98 -2.72 -0.08 -1.38 15 18 C -0.04 -1.48 6.32 22.30 0.14 -1.34 15 19 Cl -0.06 -1.78 27.98 -2.72 -0.08 -1.86 15 20 C -0.09 -3.62 8.51 22.35 0.19 -3.43 15 21 C -0.08 -3.19 5.47 -19.86 -0.11 -3.30 15 22 H 0.26 13.81 8.31 -92.71 -0.77 13.04 15 23 H 0.33 14.19 8.55 -89.69 -0.77 13.42 15 24 H 0.05 1.88 8.05 -2.39 -0.02 1.86 15 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 15 26 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 27 H 0.09 2.17 8.14 -2.39 -0.02 2.16 15 28 H 0.17 3.46 8.06 -2.91 -0.02 3.44 15 29 H 0.13 5.42 7.07 -2.91 -0.02 5.40 15 Total: -1.00 -56.12 274.61 1.60 -54.53 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.42 Total: 12.97 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 1.96 Total: -28.17 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -2.66 Total: -80.24 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 17 Polarization: -3.08 SS G_CDS: -0.15 Total: -3.24 kcal Total: -56.12 1.60 -54.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083692395.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.784 kcal (2) G-P(sol) polarization free energy of solvation -56.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds