Wall clock time and date at job start Mon Mar 30 2020 07:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86802 * 119.99893 * 2 1 4 4 H 1.48495 * 109.47292 * 240.00546 * 3 2 1 5 5 H 1.48500 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47103 * 120.00544 * 3 2 1 7 7 C 1.39721 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00209 * 186.15185 * 7 2 1 9 9 C 1.41159 * 119.99549 * 6.15331 * 7 2 1 10 10 C 1.37698 * 122.85688 * 173.97174 * 9 7 2 11 11 S 1.71003 * 108.83522 * 179.76892 * 10 9 7 12 12 C 1.75889 * 90.80674 * 0.33882 * 11 10 9 13 13 C 1.50709 * 124.98926 * 179.91771 * 12 11 10 14 14 H 1.08998 * 110.26686 * 179.07834 * 13 12 11 15 15 C 1.54341 * 110.30185 * 56.89337 * 13 12 11 16 16 C 1.54349 * 102.39203 * 214.73135 * 15 13 12 17 17 C 1.51368 * 105.16597 * 26.35048 * 16 15 13 18 18 C 1.38498 * 130.38897 * 162.81250 * 17 16 15 19 19 C 1.38099 * 120.21797 * 179.97438 * 18 17 16 20 20 C 1.38256 * 119.93465 * 359.65689 * 19 18 17 21 21 C 1.38109 * 119.92891 * 0.65334 * 20 19 18 22 22 C 1.38209 * 109.76382 * 342.81016 * 17 16 15 23 23 N 1.28795 * 110.01713 * 359.65074 * 12 11 10 24 24 H 0.96998 * 120.00557 * 359.97438 * 1 2 3 25 25 H 1.07998 * 125.58213 * 359.97438 * 10 9 7 26 26 H 1.08994 * 110.82613 * 332.96324 * 15 13 12 27 27 H 1.09000 * 110.81655 * 96.50908 * 15 13 12 28 28 H 1.08992 * 110.30175 * 145.27433 * 16 15 13 29 29 H 1.09002 * 110.30283 * 267.43131 * 16 15 13 30 30 H 1.08007 * 119.89432 * 359.97438 * 18 17 16 31 31 H 1.08001 * 120.03346 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.03562 * 180.32643 * 20 19 18 33 33 H 1.08001 * 119.88820 * 179.65685 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0977 1.6965 -1.2125 5 1 1.2791 2.7465 0.0006 6 1 3.0980 1.6964 1.2125 7 6 2.0088 -1.2100 -0.0005 8 1 3.0841 -1.2127 0.0997 9 6 1.3091 -2.4289 -0.1321 10 6 1.9434 -3.6442 -0.2612 11 16 0.7611 -4.8732 -0.3881 12 6 -0.5267 -3.6810 -0.2706 13 6 -2.0004 -3.9943 -0.3075 14 1 -2.5836 -3.0798 -0.1995 15 6 -2.3626 -4.9979 0.8077 16 6 -3.4724 -5.8421 0.1459 17 6 -3.2019 -5.7562 -1.3409 18 6 -3.6597 -6.5447 -2.3834 19 6 -3.2743 -6.2731 -3.6814 20 6 -2.4344 -5.2066 -3.9429 21 6 -1.9717 -4.4230 -2.9040 22 6 -2.3562 -4.6946 -1.6015 23 7 -0.0253 -2.5015 -0.1429 24 1 -0.4851 0.8400 0.0004 25 1 3.0124 -3.7967 -0.2761 26 1 -1.5042 -5.6187 1.0640 27 1 -2.7432 -4.4788 1.6874 28 1 -3.4116 -6.8771 0.4822 29 1 -4.4529 -5.4256 0.3766 30 1 -4.3203 -7.3748 -2.1806 31 1 -3.6335 -6.8897 -4.4922 32 1 -2.1362 -4.9895 -4.9580 33 1 -1.3112 -3.5934 -3.1084 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088040969.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:22 Heat of formation + Delta-G solvation = 54.740150 kcal Electronic energy + Delta-G solvation = -17679.411237 eV Core-core repulsion = 14988.853913 eV Total energy + Delta-G solvation = -2690.557324 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.93205 -37.69557 -35.52348 -33.17595 -31.43021 -29.48993 -28.62382 -27.00951 -25.53076 -22.46843 -22.41163 -20.65355 -20.21472 -18.75900 -17.58008 -16.06666 -15.44707 -15.12403 -14.90354 -14.74482 -14.48132 -13.45511 -13.24246 -12.87565 -12.80243 -12.50437 -12.37451 -11.59135 -11.46220 -11.35919 -11.24633 -11.15194 -10.94650 -10.73748 -10.65299 -10.53573 -10.27764 -9.63862 -9.23373 -8.54781 -8.31404 -7.98110 -7.93032 -7.28425 -6.52821 -4.33611 1.59549 1.66028 2.31476 2.96805 3.07825 3.09860 3.12767 3.71906 4.00600 4.02171 4.28386 4.64453 4.87680 5.08586 5.21255 5.26357 5.36757 5.48381 5.59137 5.64391 5.75018 5.91255 5.99902 6.08537 6.20198 6.24101 6.42696 6.52924 6.67961 6.77435 6.84336 6.96494 7.12588 7.24535 7.28353 7.53926 8.20540 8.56773 8.90184 9.62033 10.35097 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.025956 B = 0.005451 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.472852 B = 5135.723564 C = 5283.247623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.226 3.774 10 C -0.457 4.457 11 S -0.034 6.034 12 C 0.067 3.933 13 C 0.032 3.968 14 H 0.108 0.892 15 C -0.113 4.113 16 C -0.079 4.079 17 C -0.097 4.097 18 C -0.113 4.113 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.089 4.089 22 C -0.073 4.073 23 N -0.397 5.397 24 H 0.274 0.726 25 H 0.136 0.864 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 -8.439 -2.733 12.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.149 4.149 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.468 4.468 8 H 0.101 0.899 9 C 0.104 3.896 10 C -0.596 4.596 11 S 0.214 5.786 12 C -0.217 4.217 13 C 0.010 3.990 14 H 0.126 0.874 15 C -0.152 4.152 16 C -0.116 4.116 17 C -0.097 4.097 18 C -0.131 4.131 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.107 4.107 22 C -0.074 4.074 23 N -0.110 5.110 24 H 0.084 0.916 25 H 0.153 0.847 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.696 -8.830 -2.769 12.699 hybrid contribution 1.173 1.665 -0.057 2.037 sum -7.523 -7.165 -2.826 10.767 Atomic orbital electron populations 1.70093 1.06969 1.28062 1.32438 1.25970 0.94942 1.00975 0.93034 0.86349 0.79963 0.80416 0.79814 1.19027 1.20322 1.19033 1.18907 0.94427 0.88535 1.44963 0.89931 1.17989 0.85335 0.93094 0.93225 1.25123 1.01030 0.94635 1.38786 1.82645 1.01798 1.16830 1.77319 1.27494 0.97525 0.90917 1.05793 1.19181 0.89601 0.98898 0.91360 0.87384 1.22467 0.98591 0.96801 0.97295 1.21045 0.99267 1.00763 0.90506 1.20564 0.97838 0.95807 0.95496 1.20504 1.00986 0.99659 0.91995 1.20948 0.99051 0.98039 0.96234 1.20998 0.98482 0.95912 0.98708 1.20729 0.98894 0.99591 0.91489 1.20444 0.96952 0.95940 0.94087 1.67399 1.12408 1.19373 1.11822 0.91561 0.84651 0.90195 0.90079 0.90723 0.90234 0.86622 0.86337 0.86202 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.42 11.72 55.54 0.65 -19.76 16 2 C 0.07 1.92 5.49 -17.35 -0.10 1.82 16 3 Si 0.91 19.32 29.56 -169.99 -5.03 14.29 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.43 -12.14 9.23 -37.92 -0.35 -12.49 16 8 H 0.08 2.20 7.85 -52.49 -0.41 1.79 16 9 C 0.23 6.38 6.46 -86.17 -0.56 5.83 16 10 C -0.46 -11.97 10.98 30.54 0.34 -11.64 16 11 S -0.03 -0.77 22.36 -107.50 -2.40 -3.17 16 12 C 0.07 1.54 6.05 -13.55 -0.08 1.46 16 13 C 0.03 0.60 3.38 -91.89 -0.31 0.29 16 14 H 0.11 2.09 8.14 -51.93 -0.42 1.66 16 15 C -0.11 -1.72 6.56 -25.32 -0.17 -1.89 16 16 C -0.08 -1.00 6.77 -26.85 -0.18 -1.18 16 17 C -0.10 -1.43 6.14 -104.21 -0.64 -2.07 16 18 C -0.11 -1.48 10.04 -39.54 -0.40 -1.87 16 19 C -0.12 -1.59 10.05 -39.63 -0.40 -1.99 16 20 C -0.12 -1.77 10.05 -39.62 -0.40 -2.16 16 21 C -0.09 -1.54 9.78 -39.53 -0.39 -1.93 16 22 C -0.07 -1.27 5.51 -104.21 -0.57 -1.84 16 23 N -0.40 -10.78 8.49 -8.35 -0.07 -10.85 16 24 H 0.27 6.78 8.30 -40.82 -0.34 6.44 16 25 H 0.14 3.41 8.06 -52.49 -0.42 2.99 16 26 H 0.08 1.28 7.29 -51.93 -0.38 0.90 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 296.23 15.07 4.46 4.46 Total: -1.00 -30.30 296.23 -10.32 -40.62 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -3.73 Total: 4.09 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -4.20 Total: -29.67 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: 0.58 Total: -30.62 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -2.40 Total: -3.17 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.30 -10.32 -40.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088040969.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.357 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds